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Lipid interactions and angle of approach to the HIV-1 viral membrane of broadly neutralizing antibody 10E8: Insights for vaccine and therapeutic design

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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CHARMM: The biomolecular simulation program
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Lipid binding properties of 4E10, 2F5, and WR304 monoclonal antibodies that neutralize HIV-1
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Broadly Neutralizing Anti-HIV Antibody 4E10 Recognizes a Helical Conformation of a Highly Conserved Fusion-Associated Motif in gp41
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HIV-1 Broadly Neutralizing Antibody Extracts Its Epitope from a Kinked gp41 Ectodomain Region on the Viral Membrane
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Crystallographic Identification of Lipid as an Integral Component of the Epitope of HIV Broadly Neutralizing Antibody 4E10
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Structural Basis of Enhanced Binding of Extended and Helically Constrained Peptide Epitopes of the Broadly Neutralizing HIV-1 Antibody 4E10
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Structural Details of HIV-1 Recognition by the Broadly Neutralizing Monoclonal Antibody 2F5: Epitope Conformation, Antigen-Recognition Loop Mobility, and Anion-Binding Site
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Computational Design of Epitope-Scaffolds Allows Induction of Antibodies Specific for a Poorly Immunogenic HIV Vaccine Epitope
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[20] Processing of X-ray diffraction data collected in oscillation mode
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Exposure of the Membrane-Proximal External Region of HIV-1 gp41 in the Course of HIV-1 Envelope Glycoprotein-Mediated Fusion
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Distribution and three-dimensional structure of AIDS virus envelope spikes
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Broad neutralization coverage of HIV by multiple highly potent antibodies
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Broad and potent neutralization of HIV-1 by a gp41-specific human antibody
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Structure and immune recognition of trimeric pre-fusion HIV-1 Env
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Membrane lipids: where they are and how they behave
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The HIV lipidome: A raft with an unusual composition
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A fusion-intermediate state of HIV-1 gp41 targeted by broadly neutralizing antibodies
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Broadly neutralizing anti-HIV-1 antibodies disrupt a hinge-related function of gp41 at the membrane interface
inferredcites →https://doi.org/10.1073/pnas.0908713106openalex-snapshot
Role of HIV membrane in neutralization by two broadly neutralizing antibodies
inferredcites →https://doi.org/10.1073/pnas.0909680107openalex-snapshot
Aromatic residues at the edge of the antibody combining site facilitate viral glycoprotein recognition through membrane interactions
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Lipid composition and fluidity of the human immunodeficiency virus envelope and host cell plasma membranes.
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The Atomic Structure of the HIV-1 gp41 Transmembrane Domain and Its Connection to the Immunogenic Membrane-proximal External Region
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CCR5 signaling through phospholipase D involves p44/42 MAP‐kinases and promotes HIV‐1 LTR‐directed gene expression
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The membrane-proximal external region of HIV-1 gp41: a vaccine target worth exploring
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Reactivity profiles of broadly neutralizing anti-HIV-1 antibodies are distinct from those of pathogenic autoantibodies
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Phaser crystallographic software
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XDS
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PHENIX : a comprehensive Python-based system for macromolecular structure solution
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Features and development of Coot
inferredcites →https://doi.org/10.1111/cmi.12101openalex-snapshot
Comparative lipidomics analysis of HIV-1 particles and their producer cell membrane in different cell lines
inferredcites →https://doi.org/10.1126/science.1111781openalex-snapshot
Cardiolipin Polyspecific Autoreactivity in Two Broadly Neutralizing HIV-1 Antibodies
inferredcites →https://doi.org/10.1126/science.1245625openalex-snapshot
Crystal Structure of a Soluble Cleaved HIV-1 Envelope Trimer
inferredcites →https://doi.org/10.1126/science.1245627openalex-snapshot
Cryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer
inferredcites →https://doi.org/10.1126/science.aad2450openalex-snapshot
Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer
inferredcites →https://doi.org/10.1126/science.aaf7066openalex-snapshot
Structural basis for membrane anchoring of HIV-1 envelope spike
inferredcites →https://doi.org/10.1128/jvi.00685-09openalex-snapshot
A Conformational Switch in Human Immunodeficiency Virus gp41 Revealed by the Structures of Overlapping Epitopes Recognized by Neutralizing Antibodies
inferredcites →https://doi.org/10.1128/jvi.00756-11openalex-snapshot
Direct Antibody Access to the HIV-1 Membrane-Proximal External Region Positively Correlates with Neutralization Sensitivity
inferredcites →https://doi.org/10.1128/jvi.02108-09openalex-snapshot
Tiered Categorization of a Diverse Panel of HIV-1 Env Pseudoviruses for Assessment of Neutralizing Antibodies
inferredcites →https://doi.org/10.1128/jvi.02113-09openalex-snapshot
Interactions between Lipids and Human Anti-HIV Antibody 4E10 Can Be Reduced without Ablating Neutralizing Activity
inferredcites →https://doi.org/10.1128/jvi.02257-09openalex-snapshot
Relationship between Antibody 2F5 Neutralization of HIV-1 and Hydrophobicity of Its Heavy Chain Third Complementarity-Determining Region
inferredcites →https://doi.org/10.1128/jvi.02664-13openalex-snapshot
Mechanism of HIV-1 Neutralization by Antibodies Targeting a Membrane-Proximal Region of gp41
inferredcites →https://doi.org/10.1128/jvi.03246-15openalex-snapshot
Optimization of the Solubility of HIV-1-Neutralizing Antibody 10E8 through Somatic Variation and Structure-Based Design
inferredcites →https://doi.org/10.1128/jvi.05489-11openalex-snapshot
Binding of Anti-Membrane-Proximal gp41 Monoclonal Antibodies to CD4-Liganded and -Unliganded Human Immunodeficiency Virus Type 1 and Simian Immunodeficiency Virus Virions
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Fine Definition of the Epitope on the gp41 Glycoprotein of Human Immunodeficiency Virus Type 1 for the Neutralizing Monoclonal Antibody 2F5
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Structure and Mechanistic Analysis of the Anti-Human Immunodeficiency Virus Type 1 Antibody 2F5 in Complex with Its gp41 Epitope
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Human Immunodeficiency Virus Type 1 env Clones from Acute and Early Subtype B Infections for Standardized Assessments of Vaccine-Elicited Neutralizing Antibodies
inferredcites →https://doi.org/10.1146/annurev-immunol-041015-055515openalex-snapshot
Broadly Neutralizing Antibodies to HIV and Their Role in Vaccine Design
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Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations
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Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8
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Cryo-Electron Tomographic Structure of an Immunodeficiency Virus Envelope Complex In Situ
inferredcites →https://doi.org/10.1371/journal.ppat.1000203openalex-snapshot
Cryoelectron Tomography of HIV-1 Envelope Spikes: Further Evidence for Tripod-Like Legs
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Molecular Architectures of Trimeric SIV and HIV-1 Envelope Glycoproteins on Intact Viruses: Strain-Dependent Variation in Quaternary Structure
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Structural Mechanism of Trimeric HIV-1 Envelope Glycoprotein Activation
inferredcites →https://doi.org/10.1371/journal.ppat.1002806openalex-snapshot
Structure-guided Alterations of the gp41-directed HIV-1 Broadly Neutralizing Antibody 2F5 Reveal New Properties Regarding its Neutralizing Function
inferredcites →https://doi.org/10.4049/jimmunol.1300770openalex-snapshot
Common Tolerance Mechanisms, but Distinct Cross-Reactivities Associated with gp41 and Lipids, Limit Production of HIV-1 Broad Neutralizing Antibodies 2F5 and 4E10
inferredcites →https://doi.org/10.4049/jimmunol.1301285openalex-snapshot
Immune Tolerance Negatively Regulates B Cells in Knock-In Mice Expressing Broadly Neutralizing HIV Antibody 4E10
inferredcites →https://doi.org/10.4049/jimmunol.178.7.4424openalex-snapshot
The Role of Antibody Polyspecificity and Lipid Reactivity in Binding of Broadly Neutralizing Anti-HIV-1 Envelope Human Monoclonal Antibodies 2F5 and 4E10 to Glycoprotein 41 Membrane Proximal Envelope Epitopes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Structural Basis for Broad HIV-1 Neutralization by a Novel MPER-Specific Human Broadly Neutralizing Antibody
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A two‐step mechanism for the binding of the HIV ‐1 MPER epitope by the 10 E 8 antibody onto biosensor‐supported lipid bilayers
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Broadly Neutralizing Antibodies to Highly Antigenically Variable Viruses as Templates for Vaccine Design
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Structural Features of Broadly Neutralizing Antibodies and Rational Design of Vaccine
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The development of HIV vaccines targeting gp41 membrane-proximal external region (MPER): challenges and prospects
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Exposure of the HIV-1 broadly neutralizing antibody 10E8 MPER epitope on the membrane surface by gp41 transmembrane domain scaffolds
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Vaccine based on antibody-dependent cell-mediated cytotoxicity epitope on the H1N1 influenza virus increases mortality in vaccinated mice
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Influence of glycosylation on the immunogenicity and antigenicity of viral immunogens
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The Bilayer Collective Properties Govern the Interaction of an HIV-1 Antibody with the Viral Membrane
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Quantitative characterization of membrane-protein reversible association using FCS
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Surface-Matrix Screening Identifies Semi-specific Interactions that Improve Potency of a Near Pan-reactive HIV-1-Neutralizing Antibody
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HIV-1 Envelope and MPER Antibody Structures in Lipid Assemblies
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Affinity for the Interface Underpins Potency of Antibodies Operating In Membrane Environments
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Cryo-EM structures of antibodies elicited by germline-targeting HIV MPER epitope scaffolds
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Structural Basis for Broad HIV-1 Neutralization by the MPER-Specific Human Broadly Neutralizing Antibody LN01
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HIV-1 Vaccines Based on Antibody Identification, B Cell Ontogeny, and Epitope Structure
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Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual
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Membrane HIV-1 envelope glycoproteins stabilized more strongly in a pretriggered conformation than natural virus Envs
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Cholesterol Interaction with the Trimeric HIV Fusion Protein gp41 in Lipid Bilayers Investigated by Solid-State NMR Spectroscopy and Molecular Dynamics Simulations
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N-terminal Transmembrane-Helix Epitope Tag for X-ray Crystallography and Electron Microscopy of Small Membrane Proteins
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Influence of membrane on the antigen presentation of the HIV-1 envelope membrane proximal external region (MPER)
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Effect of diversity in gp41 membrane proximal external region of primary HIV-1 Indian subtype C sequences on interaction with broadly neutralizing antibodies 4E10 and 10E8
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Overcoming the Multiple-Monomeric-Peak Profile of Broadly Neutralizing HIV-1 Antibody 10E8 with a Unique Size-Exclusion-Chromatography Method
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Distinctive Membrane Accommodation Traits Underpinning the Neutralization Activity of HIV-1 Antibody against MPER
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Generation of a Nonbilayer Lipid Nanoenvironment after Epitope Binding Potentiates Neutralizing HIV-1 MPER Antibody
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Cholesterol Constrains the Antigenic Configuration of the Membrane-Proximal Neutralizing HIV-1 Epitope
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Oligomeric Structure and Three-Dimensional Fold of the HIV gp41 Membrane-Proximal External Region and Transmembrane Domain in Phospholipid Bilayers
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Rational design of a trispecific antibody targeting the HIV-1 Env with elevated anti-viral activity
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Molecular recognition of the native HIV-1 MPER revealed by STED microscopy of single virions
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An MPER antibody neutralizes HIV-1 using germline features shared among donors
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Dynamic HIV-1 spike motion creates vulnerability for its membrane-bound tripod to antibody attack
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A broad antibody with enhanced HIV-1 neutralization via bispecific antibody-mediated prepositioning
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Virus glycoprotein nanodisc platform for vaccine analytics
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New GMP manufacturing processes to obtain thermostable HIV-1 gp41 virosomes under solid forms for various mucosal vaccination routes
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Antibody responses to viral infections: a structural perspective across three different enveloped viruses
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The HIV-1 envelope glycoprotein: structure, function and interactions with neutralizing antibodies
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Recent progress in broadly neutralizing antibodies to HIV
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Vaccination induces broadly neutralizing antibody precursors to HIV gp41
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Affinity gaps among B cells in germinal centers drive the selection of MPER precursors
inferred← citeshttps://doi.org/10.1038/s41598-020-71184-7openalex-snapshot
The influence of proline isomerization on potency and stability of anti-HIV antibody 10E8
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Molecular recognition of a membrane-anchored HIV-1 pan-neutralizing epitope
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Structure of the membrane proximal external region of HIV-1 envelope glycoprotein
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Topological analysis of the gp41 MPER on lipid bilayers relevant to the metastable HIV-1 envelope prefusion state
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Structural basis of membrane engagement and polyreactivity control in HIV-1 MPER broadly neutralizing antibodies
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Passive and active antibody studies in primates to inform HIV vaccines
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Myomedin scaffold variants targeted to 10E8 HIV-1 broadly neutralizing antibody mimic gp41 epitope and elicit HIV-1 virus-neutralizing sera in mice
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Optimization of the EC26-2A4 Epitope in the gp41 Membrane Proximal External Region Targeted by Neutralizing Antibodies from an Elite Controller
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Conformation-Dependent Interactions Between HIV-1 Envelope Glycoproteins and Broadly Neutralizing Antibodies
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Virus glycoprotein nanodisc platform for vaccine design
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Neutralization Breadth and Potency of Single-Chain Variable Fragments Derived from Broadly Neutralizing Antibodies Targeting Multiple Epitopes on the HIV-1 Envelope
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Inhibition of human immunodeficiency virus (HIV-1) infectivity by expression of poorly or broadly neutralizing antibodies against Env in virus-producing cells
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Enhancing HIV-1 Neutralization by Increasing the Local Concentration of Membrane-Proximal External Region-Directed Broadly Neutralizing Antibodies
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Inducible cell lines producing replication-defective human immunodeficiency virus particles containing envelope glycoproteins stabilized in a pretriggered conformation
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Characterization of the Human Immunodeficiency Virus (HIV-1) Envelope Glycoprotein Conformational States on Infectious Virus Particles
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Global Increases in Human Immunodeficiency Virus Neutralization Sensitivity Due to Alterations in the Membrane-Proximal External Region of the Envelope Glycoprotein Can Be Minimized by Distant State 1-Stabilizing Changes
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Single-Chain Variable Fragments of Broadly Neutralizing Antibodies Prevent HIV Cell-Cell Transmission
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Functional Optimization of Broadly Neutralizing HIV-1 Antibody 10E8 by Promotion of Membrane Interactions
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Identification of variant HIV envelope proteins with enhanced affinities for precursors to anti-gp41 broadly neutralizing antibodies
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Similarities and differences between native HIV-1 envelope glycoprotein trimers and stabilized soluble trimer mimetics
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Peptide Triazole Inhibitors of HIV-1: Hijackers of Env Metastability
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HIV Antivirals: Targeting the Functional Organization of the Lipid Envelope
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Production and characterization of novel immunogens and their applications in pioneering vaccination strategies for induction of broadly neutralizing antibodies against HIV-1
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The Structural and Immunological Properties of Chimeric Proteins Containing HIV-1 MPER Sites
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Immunologic Insights on the Membrane Proximal External Region: A Major Human Immunodeficiency Virus Type-1 Vaccine Target
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Structural Features of Antibody-Peptide Recognition
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Structures of HIV-1 Neutralizing Antibody 10E8 Delineate the Mechanistic Basis of Its Multi-Peak Behavior on Size-Exclusion Chromatography
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Functional Delineation of a Protein–Membrane Interaction Hotspot Site on the HIV-1 Neutralizing Antibody 10E8
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Neutralizing Antibodies Targeting HIV-1 gp41
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HIV Membrane-Proximal External Region Scaffolded Immunogen as Killed Whole-Cell Genome-Reduced Vaccines
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Faculty Opinions recommendation of Neutralization Breadth and Potency of Single-Chain Variable Fragments Derived from Broadly Neutralizing Antibodies Targeting Multiple Epitopes on the HIV-1 Envelope.
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Caractérisation des activités antivirales des anticorps anti-VIH-1 et anti-SARS-CoV-2
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Etude des propriétés fonctionnelles de la glycoprotéine d'enveloppe des variants transmis du VIH-1 et de leur évolution à l'échelle individuelle et populationnelle
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Diversité du Virus de l'Immunodéficience Humaine 1 (VIH-1) et évolution de la sensibilité aux anti-corps neutralisants : analyses au niveau individuel et au niveau populationnel
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Ab initio prediction of specific phospholipid complexes and membrane association of HIV-1 MPER antibodies by multi-scale simulations
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Ab initio prediction of specific phospholipid complexes and membrane association of HIV-1 MPER antibodies by multi-scale simulations
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Ab initio prediction of specific phospholipid complexes and membrane association of HIV-1 MPER antibodies by multi-scale simulations
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Ab initio prediction of specific phospholipid complexes and membrane association of HIV-1 MPER antibodies by multi-scale simulations
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