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A Variable Genetic Architecture of Melanic Evolution in Drosophila melanogaster

https://doi.org/10.1534/genetics.116.192492
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Adaptive evolution of non-coding DNA in Drosophila
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Ancient balancing selection at tan underlies female colour dimorphism in Drosophila erecta
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Thoracic trident pigmentation in Drosophila melanogaster: latitudinal and altitudinal clines in Indian populations
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Contrasting genetic paths to morphological and physiological evolution
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Genome differentiation of Drosophila melanogaster from a microclimate contrast in Evolution Canyon, Israel
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Decanalization of wing development accompanied the evolution of large wings in high-altitude Drosophila
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Fast and accurate short read alignment with Burrows–Wheeler transform
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The Mosaic Ancestry of the Drosophila Genetic Reference Panel and the D. melanogaster Reference Genome Reveals a Network of Epistatic Fitness Interactions
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Melanism
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Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison
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The Oligogenic View of Adaptation
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THE LOCI OF REPEATED EVOLUTION: A CATALOG OF GENETIC HOTSPOTS OF PHENOTYPIC VARIATION
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The genetic basis of adaptive pigmentation variation in Drosophila melanogaster
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Identification of X-linked quantitative trait loci affecting cold tolerance in Drosophila melanogaster and fine mapping by selective sweep analysis
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The molecular genetics of clinal variation: a case study of ebony and thoracic trident pigmentation in Drosophila melanogaster from eastern Australia
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THE LOCUS OF EVOLUTION: EVO DEVO AND THE GENETICS OF ADAPTATION
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THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE
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EVIDENCE OF ADAPTATION FROM ANCESTRAL VARIATION IN YOUNG POPULATIONS OF BEACH MICE
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Unraveling the thread of nature’s tapestry: the genetics of diversity and convergence in animal pigmentation
inferredcites →https://doi.org/10.1111/mec.13432openalex-snapshot
Complex patterns of cis‐regulatory polymorphisms in ebony underlie standing pigmentation variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1111/mec.13446openalex-snapshot
Comparative population genomics of latitudinal variation in Drosophila simulans and Drosophila melanogaster
inferredcites →https://doi.org/10.1111/mec.13455openalex-snapshot
Secondary contact and local adaptation contribute to genome‐wide patterns of clinal variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1111/mec.13464openalex-snapshot
Population genetic evidence for cold adaptation in European Drosophila melanogaster populations
inferredcites →https://doi.org/10.1111/mec.13671openalex-snapshot
A haplotype method detects diverse scenarios of local adaptation from genomic sequence variation
inferredcites →https://doi.org/10.1126/science.1178357openalex-snapshot
Stepwise Modification of a Modular Enhancer Underlies Adaptation in a Drosophila Population
inferredcites →https://doi.org/10.1126/science.1198374openalex-snapshot
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
inferredcites →https://doi.org/10.1126/science.1200684openalex-snapshot
The Developmental Role of Agouti in Color Pattern Evolution
inferredcites →https://doi.org/10.1126/science.1233213openalex-snapshot
Adaptive Evolution of Multiple Traits Through Multiple Mutations at a Single Gene
inferredcites →https://doi.org/10.1186/1297-9686-17-2-211openalex-snapshot
Thoracic trident pigmentation in Drosophila melanogaster: Differentiation of geographical populations
inferredcites →https://doi.org/10.1186/1297-9686-29-5-601openalex-snapshot
Thoracic trident pigmentation in Drosophila melanogaster: latitudinal and altitudinal clines in Indian populations
inferredcites →https://doi.org/10.1186/s12862-014-0179-yopenalex-snapshot
Pigmentation in Drosophila melanogaster reaches its maximum in Ethiopia and correlates most strongly with ultra-violet radiation in sub-Saharan Africa
inferredcites →https://doi.org/10.1242/dev.129.8.1849openalex-snapshot
Reciprocal functions of the Drosophila Yellow and Ebony proteins in the development and evolution of pigment patterns
inferredcites →https://doi.org/10.1371/journal.pgen.0020186openalex-snapshot
Soft Sweeps III: The Signature of Positive Selection from Recurrent Mutation
inferredcites →https://doi.org/10.1371/journal.pgen.0030030openalex-snapshot
Phenotypic Plasticity in Drosophila Pigmentation Caused by Temperature Sensitivity of a Chromatin Regulator Network
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1000867openalex-snapshot
Association of the OCA2 Polymorphism His615Arg with Melanin Content in East Asian Populations: Further Evidence of Convergent Evolution of Skin Pigmentation
inferredcites →https://doi.org/10.1371/journal.pgen.1001222openalex-snapshot
Nomadic Enhancers: Tissue-Specific cis-Regulatory Elements of yellow Have Divergent Genomic Positions among Drosophila Species
inferredcites →https://doi.org/10.1371/journal.pgen.1001275openalex-snapshot
Composite Effects of Polymorphisms near Multiple Regulatory Elements Create a Major-Effect QTL
inferredcites →https://doi.org/10.1371/journal.pgen.1001280openalex-snapshot
Segregating Variation in the Polycomb Group Gene cramped Alters the Effect of Temperature on Multiple Traits
inferredcites →https://doi.org/10.1371/journal.pgen.1002905openalex-snapshot
The Many Landscapes of Recombination in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1003080openalex-snapshot
Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture
inferredcites →https://doi.org/10.1371/journal.pgen.1003534openalex-snapshot
A Genome-Wide, Fine-Scale Map of Natural Pigmentation Variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1003740openalex-snapshot
Recurrent Modification of a Conserved Cis-Regulatory Element Underlies Fruit Fly Pigmentation Diversity
inferredcites →https://doi.org/10.1371/journal.pgen.1005163openalex-snapshot
Genetic Architecture of Abdominal Pigmentation in Drosophila melanogaster
inferredcites →https://doi.org/10.1371/journal.pgen.1005279openalex-snapshot
Genetic Changes to a Transcriptional Silencer Element Confers Phenotypic Diversity within and between Drosophila Species
inferredcites →https://doi.org/10.1371/journal.pgen.1006218openalex-snapshot
Phenotypic Plasticity through Transcriptional Regulation of the Evolutionary Hotspot Gene tan in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/g3.113.006619openalex-snapshot
The Genetic Architecture of Methotrexate Toxicity Is Similar in Drosophila melanogaster and Humans
inferredcites →https://doi.org/10.1534/genetics.106.056341openalex-snapshot
jing Is Required for Wing Development and to Establish the Proximo-Distal Axis of the Leg in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.113.151670openalex-snapshot
Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.114.161463openalex-snapshot
Parallel Geographic Variation in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.114.161968openalex-snapshot
Using Drosophila melanogaster To Identify Chemotherapy Toxicity Genes
inferredcites →https://doi.org/10.1534/genetics.115.174664openalex-snapshot
The Drosophila Genome Nexus: A Population Genomic Resource of 623 Drosophila melanogaster Genomes, Including 197 from a Single Ancestral Range Population
inferredcites →https://doi.org/10.1534/genetics.115.183376openalex-snapshot
Reconciling Differences in Pool-GWAS Between Populations: A Case Study of Female Abdominal Pigmentation in Drosophila melanogaster
inferredcites →https://doi.org/10.1534/genetics.115.185496openalex-snapshot
Genomic Patterns of Geographic Differentiation in Drosophila simulans
inferredcites →https://doi.org/10.1534/genetics.116.192484openalex-snapshot
Genetic Mapping by Bulk Segregant Analysis in Drosophila : Experimental Design and Simulation-Based Inference

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Early life-stage thermal resilience is determined by climate-linked regulatory variation
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Gene Regulatory Evolution in Cold-Adapted Fly Populations Neutralizes Plasticity and May Undermine Genetic Canalization
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