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The Origin of Oranges: A Multi-locus Phylogeny of Rutaceae Subfamily Aurantioideae

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Molecular Evolution and Phylogenetic Implications of Internal Transcribed Spacer Sequences of Ribosomal DNA in Winteraceae
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Phylogenetic relationships of Citrus and its relatives based on rbcL gene sequences
inferredcites →https://doi.org/10.1007/s11295-010-0314-xopenalex-snapshot
New universal mitochondrial PCR markers reveal new information on maternal citrus phylogeny
inferredcites →https://doi.org/10.1016/j.ode.2008.11.001openalex-snapshot
Phylogenetic relationships of the Aurantioideae (Rutaceae) based on the nuclear ribosomal DNA ITS region and three noncoding chloroplast DNA regions, atpB-rbcL spacer, rps16, and trnL-trnF
inferredcites →https://doi.org/10.1016/j.revpalbo.2009.12.005openalex-snapshot
Rutaceae leaf fossils from the Late Oligocene (27.23 Ma) Guang River flora of northwestern Ethiopia
inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot
Gene tree discordance, phylogenetic inference and the multispecies coalescent
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The impact of intragenic recombination on phylogenetic reconstruction at the sectional level in Eucalyptus when using a single copy nuclear gene (cinnamoyl CoA reductase)
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Testing the polyploid past of soybean using a low-copy nuclear gene—Is Glycine (Fabaceae: Papilionoideae) an auto- or allopolyploid?
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Ribosomal ITS sequences and plant phylogenetic inference
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Cenozoic geological and plate tectonic evolution of SE Asia and the SW Pacific: computer-based reconstructions, model and animations
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Historical biogeography inference in Malesia
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Internal transcribed spacer repeat‐specific primers and the analysis of hybridization in the Glycine tomentella (Leguminosae) polyploid complex
inferredcites →https://doi.org/10.1055/s-2001-11747openalex-snapshot
Phylogenetic Analyses of Aurantioideae (Rutaceae) Based on Non‐Coding Plastid DNA Sequences and Phytochemical Features
inferredcites →https://doi.org/10.1073/pnas.0607004104openalex-snapshot
High-resolution species trees without concatenation
inferredcites →https://doi.org/10.1073/pnas.92.1.280openalex-snapshot
Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium).
inferredcites →https://doi.org/10.1078/1439-6092-00058openalex-snapshot
What is Taxonomic implications from a study of cp-DNA evolution in the tribe Citreae (Rutaceae subfamily Aurantioideae)
inferredcites →https://doi.org/10.1080/10635150601146041openalex-snapshot
Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence
inferredcites →https://doi.org/10.1080/10635150701883881openalex-snapshot
Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis
inferredcites →https://doi.org/10.1080/10635150802172168openalex-snapshot
The Reticulate History of Medicago (Fabaceae)
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/bth490openalex-snapshot
RDP2: recombination detection and analysis from sequence alignments
inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot
Application of Phylogenetic Networks in Evolutionary Studies
inferredcites →https://doi.org/10.1093/molbev/msp274openalex-snapshot
Bayesian Inference of Species Trees from Multilocus Data
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003974openalex-snapshot
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
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A new look at the statistical model identification
inferredcites →https://doi.org/10.1111/boj.12108openalex-snapshot
The influence of tectonics, sea-level changes and dispersal on migration and diversification of Isonandreae (Sapotaceae)
inferredcites →https://doi.org/10.1111/evo.12084openalex-snapshot
GEOGRAPHIC AND TAXONOMIC DISPARITIES IN SPECIES DIVERSITY: DISPERSAL AND DIVERSIFICATION RATES ACROSS WALLACE'S LINE
inferredcites →https://doi.org/10.1111/j.1365-2699.2008.01935.xopenalex-snapshot
The origin and evolution of Indomalesian, Australasian and Pacific island biotas: insights from Aglaieae (Meliaceae, Sapindales)
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102710-145001openalex-snapshot
Biogeography of the Indo-Australian Archipelago
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
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Relaxed Phylogenetics and Dating with Confidence
inferredcites →https://doi.org/10.1371/journal.pone.0039089openalex-snapshot
Coalescent Simulations Reveal Hybridization and Incomplete Lineage Sorting in Mediterranean Linaria
inferredcites →https://doi.org/10.1600/036364409787602221openalex-snapshot
Relationships Among Phaseoloid Legumes Based on Sequences from Eight Chloroplast Regions
inferredcites →https://doi.org/10.2307/2418763openalex-snapshot
A Numerical Taxonomic Study of Affinity Relationships in Cultivated Citrus and Its Close Relatives
inferredcites →https://doi.org/10.2307/2484763openalex-snapshot
On the History and Origin of Citrus
inferredcites →https://doi.org/10.2307/2656983openalex-snapshot
Phylogenetic relationships of Rutaceae: a cladistic analysis of the subfamilies using evidence from RBC and ATP sequence variation
inferredcites →https://doi.org/10.3732/ajb.0800341openalex-snapshot
A molecular phylogeny of the orange subfamily(Rutaceae: Aurantioideae) using nine cpDNA sequences
inferredcites →https://doi.org/10.7751/telopea19982004openalex-snapshot
Australian Citreae with notes on other Aurantioideae (Rutaceae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Recombination provides evidence for ancient hybridisation in the Silene aegyptiaca (Caryophyllaceae) complex
inferred← citeshttps://doi.org/10.1007/s00606-023-01868-wopenalex-snapshot
Complete chloroplast genomes of four Atalantia (Rutaceae) species: insights into comparative analysis, phylogenetic relationships, and divergence time estimation
inferred← citeshttps://doi.org/10.1007/s11295-017-1223-zopenalex-snapshot
Phylogenetic relationships of Aurantioideae (Rutaceae) based on RAD-Seq
inferred← citeshttps://doi.org/10.1007/s11295-023-01610-0openalex-snapshot
Heterochromatic patterns of Citrus revisited: a new look at species origins and karyotype evolution
inferred← citeshttps://doi.org/10.1007/s40415-021-00784-yopenalex-snapshot
A review of systematics studies in the Citrus family (Rutaceae, Sapindales), with emphasis on American groups
inferred← citeshttps://doi.org/10.1016/b978-0-12-812163-4.00001-2openalex-snapshot
The citrus genome
inferred← citeshttps://doi.org/10.1016/b978-0-12-812163-4.00002-4openalex-snapshot
The origin of citrus
inferred← citeshttps://doi.org/10.1016/j.afres.2026.102238openalex-snapshot
Optimization of cold atmospheric plasma pretreatment and ultrasound-assisted extraction for enhancing phenolic compounds, antioxidant, and antimicrobial activities of orange peel extract
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Asymmetric migration dynamics of the tropical Asian and Australasian floras
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A molecular-dated phylogeny and biogeography of the monotypic legume genus Haplormosia, a missing African branch of the otherwise American-Australian Brongniartieae clade
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.12.015openalex-snapshot
Analysis of whole chloroplast genomes from the genera of the Clauseneae, the curry tribe (Rutaceae, Citrus family)
inferred← citeshttps://doi.org/10.1038/s41588-023-01516-6openalex-snapshot
Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits
inferred← citeshttps://doi.org/10.1038/s41598-020-78448-2openalex-snapshot
Phylogenetic relationship of Paramignya trimera and its relatives: an evidence for the wide sexual compatibility
inferred← citeshttps://doi.org/10.1093/aob/mcad023openalex-snapshot
Phylogeny and biogeography of Tiliacoreae (Menispermaceae), a tribe restricted to tropical rainforests
inferred← citeshttps://doi.org/10.1093/botlinnean/boad055openalex-snapshot
Seed morphology of the Eriostemon–Phebalium clade (Rutaceae–Zanthoxyloideae) and implications for systematics
inferred← citeshttps://doi.org/10.1094/pdis-03-16-0271-reopenalex-snapshot
Long-Term Field Evaluation Reveals Huanglongbing Resistance inCitrusRelatives
inferred← citeshttps://doi.org/10.1111/brv.70092openalex-snapshot
Ancestral‐area algorithms are unreliable
inferred← citeshttps://doi.org/10.1111/jse.70002openalex-snapshot
Biogeography, evolution, and ecology of oranges and their relatives (Rutaceae: Aurantioideae)
inferred← citeshttps://doi.org/10.1111/njb.01552openalex-snapshot
Phylogenetic relationship of Clauseneae (Rutaceae) inferred from plastid and nuclear DNA data and taxonomic implication for some major taxa
inferred← citeshttps://doi.org/10.1142/s2737416526500262openalex-snapshot
Design, Synthesis, DFT Computations, Spectroscopic Features, Topology, Molecular Docking, in-silico Predictions and Biological Evaluation of 9-ethyl-3-[2-(2-thienyl)vinyl]-9H-Carbazole as Probable Anti-Proliferative Agent
inferred← citeshttps://doi.org/10.1360/tb-2023-1314openalex-snapshot
Pan-genome study reveals the origin and spread of Aurantioideae species
inferred← citeshttps://doi.org/10.17582/journal.pujz/2023.38.1.81.88openalex-snapshot
Population Dynamics and Epidemiology of Diaphorina citri in Relation to Yield Losses Caused by Citrus Greening
inferred← citeshttps://doi.org/10.3389/fpls.2024.1503030openalex-snapshot
Deep R-gene discovery in HLB resistant wild Australian limes uncovers evolutionary features and potentially important loci for hybrid breeding
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Bergamot Oil: Botany, Production, Pharmacology
inferred← citeshttps://doi.org/10.3390/foods14142425openalex-snapshot
Unlocking the Sublime: A Review of Native Australian Citrus Species
inferred← citeshttps://doi.org/10.3390/horticulturae11020209openalex-snapshot
Comparative Genomics Reveals Gene Duplication and Evolution in 26 Aurantioideae Species
inferred← citeshttps://doi.org/10.3390/plants13111460openalex-snapshot
Chromosome-Scale, De Novo, Phased Genome Assemblies of Three Australian Limes: Citrus australasica, C. inodora, and C. glauca
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Essential Oil of Greek Citrus sinensis cv New Hall - Citrus aurantium Pericarp: Effect upon Cellular Lipid Composition and Growth of Saccharomyces cerevisiae and Antimicrobial Activity against Bacteria, Fungi, and Human Pathogenic Microorganisms
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A genomic approach to the evolution, diversification and domestication of the genus Citrus
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