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Experimental Techniques to Assess Coral Physiology In Situ: Current Approaches and Novel Insights

https://doi.org/10.20944/preprints202011.0228.v2
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Coral reef metabolism and carbon chemistry dynamics of a coral reef flat
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Coral Reef Biodiversity
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Natural in situ relationships suggest coral reef calcium carbonate production will decline with ocean acidification
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Diel temperature and pH variability scale with depth across diverse coral reef habitats
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Shallow coral reef free ocean carbon enrichment: Novel in situ flumes to manipulate pCO2 on shallow tropical coral reef communities
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Factors Determining the Resilience of Coral Reefs to Eutrophication: A Review and Conceptual Model
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Continuous recording of photochemical and non-photochemical chlorophyll fluorescence quenching with a new type of modulation fluorometer
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The mechanism of calcification and its relation to photosynthesis and respiration in the scleractinian coral Galaxea fascicularis
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Photobiology of corals from Brazil’s near-shore marginal reefs of Abrolhos
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Use of pulse amplitude modulated (PAM) fluorometry for in situ measurements of photosynthesis in two Red Sea faviid corals
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The oxygen microenvironment adjacent to the tissue of the scleractinian Dichocoenia stokesii and its effects on symbiont metabolism
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Experience shapes the susceptibility of a reef coral to bleaching
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Measuring coral reef community metabolism using new benthic chamber technology
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Water flow influences oxygen transport and photosynthetic efficiency in corals
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Dark calcification and the daily rhythm of calcification in the scleractinian coral, Galaxea fascicularis
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A geochemical model for coral reef formation
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Distribution and photobiology of Symbiodinium types in different light environments for three colour morphs of the coral Madracis pharensis: is there more to it than total irradiance?
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Estimation of photosynthesis and calcification rates at a fringing reef by accounting for diurnal variations and the zonation of coral reef communities on reef flat and slope: a case study for the Shiraho reef, Ishigaki Island, southwest Japan
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Light-mediated 15N fractionation in Caribbean gorgonian octocorals: implications for pollution monitoring
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Nutritional status and metabolism of the coral Stylophora subseriata along a eutrophication gradient in Spermonde Archipelago (Indonesia)
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Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011)
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Stress-tolerant corals of Florida Bay are vulnerable to ocean acidification
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The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists
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Nitrogen Cycles: Past, Present, and Future
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A Century of Ocean Warming on Florida Keys Coral Reefs: Historic In Situ Observations
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Impacts of nutrient enrichment on coral reefs: new perspectives and implications for coastal management and reef survival
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Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts
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Diurnal variability in turbidity and coral fluorescence on a fringing reef flat: Southern Molokai, Hawaii
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Climate change and coral reef bleaching: An ecological assessment of long-term impacts, recovery trends and future outlook
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Determining coral reef calcification and primary production using automated alkalinity, pH and pCO measurements at high temporal resolution
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Water flow influences the distribution of photosynthetic efficiency within colonies of the scleractinian coral Montastrea annularis (Ellis and Solander, 1786); implications for coral bleaching
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Water flow influences the spatiotemporal distribution of heat shock protein 70 within colonies of the scleractinian coral Montastrea annularis (Ellis and Solander, 1786) following heat stress: Implications for coral bleaching
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Structure of marginal coral reef assemblages under different turbidity regime
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Effects of terrestrial runoff on the ecology of corals and coral reefs: review and synthesis
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Impacts of turbidity on corals: The relative importance of light limitation and suspended sediments
inferredcites →https://doi.org/10.1016/j.marpolbul.2017.04.023openalex-snapshot
Life and death of a sewage treatment plant recorded in a coral skeleton δ15N record
inferredcites →https://doi.org/10.1016/j.marpolbul.2017.07.001openalex-snapshot
Thermal stress exposure, bleaching response, and mortality in the threatened coral Acropora palmata
inferredcites →https://doi.org/10.1016/j.marpolbul.2018.07.041openalex-snapshot
Urban coral reefs: Degradation and resilience of hard coral assemblages in coastal cities of East and Southeast Asia
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A rapid in situ fluorescence census for coral reef monitoring
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Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity
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Fast repetition rate (FRR) fluorometry: variability of chlorophyll a fluorescence yields in colonies of the corals, Montastraea faveolata (w.) and Diploria labyrinthiformes (h.) recovering from bleaching
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Microsensor study of photosynthesis and calcification in the scleractinian coral, Galaxea fascicularis: active internal carbon cycle
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CO2 in Seawater: Equilibrium, Kinetics, Isotopes
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Carbon and Other Biogeochemical Cycles
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In Situ Applications of a New Diver-Operated Motorized Microsensor Profiler
inferredcites →https://doi.org/10.1029/2010gl046179openalex-snapshot
Productivity of a coral reef using boundary layer and enclosure methods
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Fluorescent pigments in corals are photoprotective
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Anthropogenic carbon and ocean pH
inferredcites →https://doi.org/10.1038/nature17155openalex-snapshot
Reversal of ocean acidification enhances net coral reef calcification
inferredcites →https://doi.org/10.1038/nature21707openalex-snapshot
Global warming and recurrent mass bleaching of corals
inferredcites →https://doi.org/10.1038/nature22901openalex-snapshot
Coral reefs in the Anthropocene
inferredcites →https://doi.org/10.1038/nature25968openalex-snapshot
Carbon dioxide addition to coral reef waters suppresses net community calcification
inferredcites →https://doi.org/10.1038/nclimate2380openalex-snapshot
Benthic coral reef calcium carbonate dissolution in an acidifying ocean
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The role of microorganisms in coral health, disease and evolution
inferredcites →https://doi.org/10.1038/s41396-018-0046-8openalex-snapshot
Climate change promotes parasitism in a coral symbiosis
inferredcites →https://doi.org/10.1038/s41586-019-1081-yopenalex-snapshot
Global warming impairs stock–recruitment dynamics of corals
inferredcites →https://doi.org/10.1038/s41598-019-48407-7openalex-snapshot
Ocean acidification effects on in situ coral reef metabolism
inferredcites →https://doi.org/10.1038/s41598-020-61712-wopenalex-snapshot
Responses of corals to chronic turbidity
inferredcites →https://doi.org/10.1038/s41598-020-68916-0openalex-snapshot
Unravelling the different causes of nitrate and ammonium effects on coral bleaching
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A short-term in situ CO2 enrichment experiment on Heron Island (GBR)
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Effects of cold stress and heat stress on coral fluorescence in reef-building corals
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Wide Field-of-View Fluorescence Imaging of Coral Reefs
inferredcites →https://doi.org/10.1071/pp9950341openalex-snapshot
Variations in Chlorophyll Fluorescence Yields in Phytoplankton in the World Oceans
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Ocean acidification causes bleaching and productivity loss in coral reef builders
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Flow enhances photosynthesis in marine benthic autotrophs by increasing the efflux of oxygen from the organism to the water
inferredcites →https://doi.org/10.1073/pnas.1601910113openalex-snapshot
Ancestral genetic diversity associated with the rapid spread of stress-tolerant coral symbionts in response to Holocene climate change
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Tropical dead zones and mass mortalities on coral reefs
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The use of variable fluorescence measurements in aquatic ecosystems: differences between multiple and single turnover measuring protocols and suggested terminology
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Fast repetition rate and pulse amplitude modulation chlorophyllafluorescence measurements for assessment of photosynthetic electron transport in marine phytoplankton
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Elevated Temperature Affects Development, Survivorship, and Settlement of the Elkhorn Coral, Acropora palmata (Lamarck 1816)
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Absorption and utilization of radiant energy by light- and shade-adapted colonies of the hermatypic coral Stylophora pistillata
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A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization
inferredcites →https://doi.org/10.1098/rspb.2010.2344openalex-snapshot
Fluorescence of coral larvae predicts their settlement response to crustose coralline algae and reflects stress
inferredcites →https://doi.org/10.1098/rspb.2017.2718openalex-snapshot
Nutrient pollution disrupts key ecosystem functions on coral reefs
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Warming up, turning sour, losing breath: ocean biogeochemistry under global change
inferredcites →https://doi.org/10.1111/2041-210x.13151openalex-snapshot
An in situ approach for measuring biogeochemical fluxes in structurally complex benthic communities
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Anthropogenic changes to seawater buffer capacity combined with natural reef metabolism induce extreme future coral reef CO 2 conditions
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Forecasted coral reef decline in marine biodiversity hotspots under climate change
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Coral reefs modify their seawater carbon chemistry – implications for impacts of ocean acidification
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The determination of activity of the enzyme Rubisco in cell extracts of the dinoflagellate alga Symbiodinium sp. by manganese chemiluminescence and its response to short‐term thermal stress of the alga
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Evaluating life‐history strategies of reef corals from species traits
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Conflict, cheats and the persistence of symbioses
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CORAL PHOTOBIOLOGY STUDIED WITH A NEW IMAGING PULSE AMPLITUDE MODULATED FLUOROMETER1
inferredcites →https://doi.org/10.1126/sciadv.1701356openalex-snapshot
Environmental controls on modern scleractinian coral and reef-scale calcification
inferredcites →https://doi.org/10.1126/sciadv.aaz5443openalex-snapshot
Trophic strategy and bleaching resistance in reef-building corals
inferredcites →https://doi.org/10.1126/sciadv.abc5493openalex-snapshot
Nutrient-supplying ocean currents modulate coral bleaching susceptibility
inferredcites →https://doi.org/10.1126/science.1067728openalex-snapshot
Marine Biodiversity Hotspots and Conservation Priorities for Tropical Reefs
inferredcites →https://doi.org/10.1126/science.1152509openalex-snapshot
Coral Reefs Under Rapid Climate Change and Ocean Acidification
inferredcites →https://doi.org/10.1126/science.1204794openalex-snapshot
Projecting Coral Reef Futures Under Global Warming and Ocean Acidification
inferredcites →https://doi.org/10.1126/science.aan8048openalex-snapshot
Spatial and temporal patterns of mass bleaching of corals in the Anthropocene
inferredcites →https://doi.org/10.1144/sp395.17openalex-snapshot
Coral reefs in the Anthropocene: persistence or the end of the line?
inferredcites →https://doi.org/10.1201/9781439817957-11openalex-snapshot
Impacts of Anthropogenic CO2 and Climate Change on the Biology of Terrestrial and Marine Systems
inferredcites →https://doi.org/10.1242/bio.20147922openalex-snapshot
Coral calcification under daily oxygen saturation and pH dynamics reveals the important role of oxygen
inferredcites →https://doi.org/10.1242/jeb.00622openalex-snapshot
Photobehavior of stony corals: responses to light spectra and intensity
inferredcites →https://doi.org/10.1242/jeb.01983openalex-snapshot
Diel `tuning' of coral metabolism: physiological responses to light cues
inferredcites →https://doi.org/10.1371/journal.pone.0000711openalex-snapshot
Regional Decline of Coral Cover in the Indo-Pacific: Timing, Extent, and Subregional Comparisons
inferredcites →https://doi.org/10.1371/journal.pone.0030167openalex-snapshot
Effects of Light, Food Availability and Temperature Stress on the Function of Photosystem II and Photosystem I of Coral Symbionts
inferredcites →https://doi.org/10.1371/journal.pone.0031192openalex-snapshot
In Situ Oxygen Dynamics in Coral-Algal Interactions
inferredcites →https://doi.org/10.1371/journal.pone.0058581openalex-snapshot
In Situ Coral Reef Oxygen Metabolism: An Eddy Correlation Study
inferredcites →https://doi.org/10.1371/journal.pone.0138800openalex-snapshot
The “Flexi-Chamber”: A Novel Cost-Effective In Situ Respirometry Chamber for Coral Physiological Measurements
inferredcites →https://doi.org/10.1371/journal.pone.0190872openalex-snapshot
Taking the metabolic pulse of the world’s coral reefs
inferredcites →https://doi.org/10.1590/s1519-69842012000400005openalex-snapshot
Potential impacts of climate change on biogeochemical functioning of Cerrado ecosystems
inferredcites →https://doi.org/10.20944/preprints202011.0228.v2openalex-snapshot
Experimental Techniques to Assess Coral Physiology In Situ: Current Approaches and Novel Insights
inferredcites →https://doi.org/10.2307/1542485openalex-snapshot
Extreme Diel Fluctuations of Oxygen in Diffusive Boundary Layers Surrounding Stony Corals
inferredcites →https://doi.org/10.3354/meps092267openalex-snapshot
Depth- and light-dependent variation of carbon partitioning and utilization in the zooxanthellate sclerac-tinian coral Stylophora pistillata
inferredcites →https://doi.org/10.3354/meps10714openalex-snapshot
Photo-physiological costs associated with acute sediment stress events in three near-shore turbid water corals
inferredcites →https://doi.org/10.3354/meps11211openalex-snapshot
Benthic O2 uptake of two cold-water coral communities estimated with the non-invasive eddy correlation technique
inferredcites →https://doi.org/10.3354/meps180139openalex-snapshot
In situ underwater measurements of photosynthetic activity of coral zooxanthellae and other reef-dwelling dinoflagellate endosymbionts
inferredcites →https://doi.org/10.3354/meps212069openalex-snapshot
Diurnal and bathymetric changes in chlorophyll fluorescence yields of reef corals measured in situ with a fast repetition rate fluorometer
inferredcites →https://doi.org/10.3354/meps243001openalex-snapshot
Diversity and distribution of coral-associated bacteria
inferredcites →https://doi.org/10.3354/meps261075openalex-snapshot
Oxygen uptake by aquatic sediments measured with a novel non-invasive eddy-correlation technique
inferredcites →https://doi.org/10.3354/meps272117openalex-snapshot
Cell death and degeneration in the symbiotic dinoflagellates of the coral Stylophora pistillata during bleaching
inferredcites →https://doi.org/10.3354/meps296291openalex-snapshot
Perspectives on mucus secretion in reef corals
inferredcites →https://doi.org/10.3354/meps298069openalex-snapshot
Benthic metabolism and degradation of natural particulate organic matter in carbonate and silicate reef sands of the northern Red Sea
inferredcites →https://doi.org/10.3389/fcimb.2014.00176openalex-snapshot
Microbes in the coral holobiont: partners through evolution, development, and ecological interactions
inferredcites →https://doi.org/10.3389/fmars.2017.00161openalex-snapshot
Net Community Metabolism and Seawater Carbonate Chemistry Scale Non-intuitively with Coral Cover
inferredcites →https://doi.org/10.3389/fmars.2018.00175openalex-snapshot
Coral Reef Carbonate Chemistry Variability at Different Functional Scales
inferredcites →https://doi.org/10.3389/fmars.2020.571451openalex-snapshot
A Diver-Portable Respirometry System for in-situ Short-Term Measurements of Coral Metabolic Health and Rates of Calcification
inferredcites →https://doi.org/10.3389/fmicb.2012.00316openalex-snapshot
Light gradients and optical microniches in coral tissues
inferredcites →https://doi.org/10.3389/fmicb.2017.00341openalex-snapshot
Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience
inferredcites →https://doi.org/10.3390/jmse8010053openalex-snapshot
Using Scuba for In Situ Determination of Chlorophyll Distributions in Corals by Underwater Near Infrared Fluorescence Imaging
inferredcites →https://doi.org/10.4161/psb.5.8.12337openalex-snapshot
Induced root-secreted phenolic compounds as a belowground plant defense
inferredcites →https://doi.org/10.4319/lo.1991.36.5.0936openalex-snapshot
In situ measurements of flow effects on primary production and dark respiration in reef corals
inferredcites →https://doi.org/10.4319/lo.2000.45.1.0242openalex-snapshot
Measurement of photosynthetic parameters in benthic organisms in situ using a SCUBA‐based fast repetition rate fluorometer
inferredcites →https://doi.org/10.4319/lo.2003.48.4.1388openalex-snapshot
Photoinhibition in shallow‐water colonies of the coral Stylophora pistillata as measured in situ
inferredcites →https://doi.org/10.4319/lo.2007.52.2.0716openalex-snapshot
Bleaching, energetics, and coral mortality risk: Effects of temperature, light, and sediment regime
inferredcites →https://doi.org/10.4319/lo.2009.54.6.1995openalex-snapshot
In situ diel cycles of photosynthesis and calcification in hermatypic corals
inferredcites →https://doi.org/10.4319/lo.2010.55.5.2139openalex-snapshot
Sea fan corals provide a stable isotope baseline for assessing sewage pollution in the Mexican Caribbean
inferredcites →https://doi.org/10.4319/lo.2011.56.1.0139openalex-snapshot
Increased rate of D1 repair in coral symbionts during bleaching is insufficient to counter accelerated photo‐inactivation
inferredcites →https://doi.org/10.4319/lo.2011.56.3.0927openalex-snapshot
Differential effects of ocean acidification on growth and photosynthesis among phylotypes of Symbiodinium (Dinophyceae)
inferredcites →https://doi.org/10.4319/lo.2011.56.6.2176openalex-snapshot
Enduring physiological and reproductive benefits of enhanced flow for a stony coral
inferredcites →https://doi.org/10.4319/lo.2013.58.4.1409openalex-snapshot
In situ assessment of the daily primary production of the temperate symbiotic coral Cladocora caespitosa
inferredcites →https://doi.org/10.4319/lo.2014.59.3.0917openalex-snapshot
The in situ light microenvironment of corals
inferredcites →https://doi.org/10.4319/lom.2011.9.361openalex-snapshot
A fully automated system for measurements of photosynthetic oxygen exchange under immersed conditions: an example of its use in Laminaria digitata (Heterokontophyta: Phaeophyceae)
inferredcites →https://doi.org/10.5194/bg-14-3549-2017openalex-snapshot
Daily variation in net primary production and net calcification in coral reef communities exposed to elevated p CO 2
inferredcites →https://doi.org/10.5194/bg-7-2509-2010openalex-snapshot
Feedbacks and responses of coral calcification on the Bermuda reef system to seasonal changes in biological processes and ocean acidification
inferredcites →https://doi.org/10.5670/oceanog.2009.102openalex-snapshot
Why Corals Care About Ocean Acidification: Uncovering the Mechanism
inferredcites →https://doi.org/10.7717/peerj.108openalex-snapshot
Influence of coral and algal exudates on microbially mediated reef metabolism
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