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Estimation of Evolutionary Rates of Mitochondrial DNA in Two Japanese Wood Mouse Species Based on Calibrations with Quaternary Environmental Changes

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

inferredcites →https://doi.org/10.1007/s10144-008-0076-6openalex-snapshot

Effects of acorn abundance on density dependence in a Japanese wood mouse (Apodemus speciosus) population

inferredcites →https://doi.org/10.1016/0016-7037(79)90028-0openalex-snapshot

The characterization of plant tissues by their lignin oxidation products

inferredcites →https://doi.org/10.1016/j.quascirev.2005.11.011openalex-snapshot

Fluctuations in the East Asian monsoon over the last 144ka in the northwest Pacific based on a high-resolution pollen analysis of IMAGES core MD01-2421

inferredcites →https://doi.org/10.1016/j.tig.2005.11.006openalex-snapshot

Molecular clocks: when timesare a-changin'

inferredcites →https://doi.org/10.1016/j.virol.2015.02.011openalex-snapshot

Endogenous viruses: Connecting recent and ancient viral evolution

inferredcites →https://doi.org/10.1016/j.ympev.2004.02.018openalex-snapshot

Phylogeographic history of the yellow-necked fieldmouse (Apodemus flavicollis) in Europe and in the Near and Middle East

inferredcites →https://doi.org/10.1023/a:1001828203201openalex-snapshot

A Phylogenetic View on Species Radiation in Apodemus Inferred from Variation of Nuclear and Mitochondrial Genes

inferredcites →https://doi.org/10.1029/1998pa900016openalex-snapshot

Land‐ocean linkages over orbital and millennial timescales recorded in Late Quaternary sediments of the Japan Sea

inferredcites →https://doi.org/10.1029/2004pa001071openalex-snapshot

A Pliocene‐Pleistocene stack of 57 globally distributed benthic δ 18 O records

inferredcites →https://doi.org/10.1038/hdy.2008.52openalex-snapshot

Molecular clock debate: Time dependency of molecular rate estimates for mtDNA: this is not the time for wishful thinking

inferredcites →https://doi.org/10.1038/hdy.2009.28openalex-snapshot

The influence of climatic oscillations during the Quaternary Era on the genetic structure of Asian black bears in Japan

inferredcites →https://doi.org/10.1038/hdy.2013.60openalex-snapshot

Evolutionary and dispersal history of Eurasian house mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA

inferredcites →https://doi.org/10.1038/nature01089openalex-snapshot

Links between climate and sea levels for the past three million years

inferredcites →https://doi.org/10.1038/nature03975openalex-snapshot

Modelled atmospheric temperatures and global sea levels over the past million years

inferredcites →https://doi.org/10.1046/j.1095-8312.2003.00253.xopenalex-snapshot

Molecular phylogeny of wood mice (Apodemus, Muridae) in East Asia

inferredcites →https://doi.org/10.1046/j.1365-294x.2003.02004.xopenalex-snapshot

Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite‐island model

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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

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Statistical Tests of Neutrality of Mutations Against Population Growth, Hitchhiking and Background Selection

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Estimation of Past Demographic Parameters From the Distribution of Pairwise Differences When the Mutation Rates Vary Among Sites: Application to Human Mitochondrial DNA

inferredcites →https://doi.org/10.1093/molbev/msp175openalex-snapshot

Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales

inferredcites →https://doi.org/10.1093/molbev/msr121openalex-snapshot

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

inferredcites →https://doi.org/10.1093/molbev/msr227openalex-snapshot

Expansion Dating: Calibrating Molecular Clocks in Marine Species from Expansions onto the Sunda Shelf Following the Last Glacial Maximum

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040023openalex-snapshot

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040727openalex-snapshot

Population growth makes waves in the distribution of pairwise genetic differences.

inferredcites →https://doi.org/10.1093/sysbio/syv120openalex-snapshot

Late Glacial Demographic Expansion Motivates a Clock Overhaul for Population Genetics

inferredcites →https://doi.org/10.1098/rsbl.2015.0194openalex-snapshot

Biogeographic calibrations for the molecular clock

inferredcites →https://doi.org/10.1098/rstb.2003.1388openalex-snapshot

Genetic consequences of climatic oscillations in the Quaternary

inferredcites →https://doi.org/10.1111/bij.12348openalex-snapshot

Effect of founding events on coat colour polymorphism ofApodemus speciosus(Rodentia: Muridae) on the Izu Islands

inferredcites →https://doi.org/10.1111/bij.12882openalex-snapshot

Post-glacial colonization of Europe by the wood mouse,Apodemus sylvaticus: evidence of a northern refugium and dispersal with humans

inferredcites →https://doi.org/10.1111/j.1095-8312.2005.00469.xopenalex-snapshot

Taxonomy, evolutionary history and biogeography of the broad-toothed field mouse (Apodemus mystacinus) in the eastern Mediterranean area based on mitochondrial and nuclear genes

inferredcites →https://doi.org/10.1111/j.1095-8312.2009.01276.xopenalex-snapshot

Phylogeography of the Japanese giant flying squirrel, Petaurista leucogenys (Rodentia: Sciuridae): implication of glacial refugia in an arboreal small mammal in the Japanese Islands

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04380.xopenalex-snapshot

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05178.xopenalex-snapshot

Time-dependent rates of molecular evolution

inferredcites →https://doi.org/10.1111/j.1558-5646.1995.tb02297.xopenalex-snapshot

GENETIC EVIDENCE FOR A PLEISTOCENE POPULATION EXPLOSION

inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02847.xopenalex-snapshot

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

inferredcites →https://doi.org/10.1111/mec.12462openalex-snapshot

Divergent evolutionary processes associated with colonization of offshore islands

inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot

BEAST: Bayesian evolutionary analysis by sampling trees

inferredcites →https://doi.org/10.1186/s12862-015-0463-5openalex-snapshot

Estimating the molecular evolutionary rates of mitochondrial genes referring to Quaternary ice age events with inferred population expansions and dispersals in Japanese Apodemus

inferredcites →https://doi.org/10.1266/ggs.79.165openalex-snapshot

Differential geographic patterns of mitochondrial DNA variation in two sympatric species of Japanese wood mice, Apodemus speciosus and A. argenteus

inferredcites →https://doi.org/10.1371/journal.pone.0058993openalex-snapshot

Evaluating Purifying Selection in the Mitochondrial DNA of Various Mammalian Species

inferredcites →https://doi.org/10.1371/journal.pone.0103949openalex-snapshot

Land-Bridge Calibration of Molecular Clocks and the Post-Glacial Colonization of Scandinavia by the Eurasian Field Vole Microtus agrestis

inferredcites →https://doi.org/10.2108/zsj.25.273openalex-snapshot

A Trend of Central Versus Peripheral Structuring in Mitochondrial and Nuclear Gene Sequences of the Japanese Wood Mouse, Apodemus speciosus

inferredcites →https://doi.org/10.2108/zsj.27.746openalex-snapshot

The Influence of Pleistocene Refugia on the Evolutionary History of the Japanese Hare, Lepus brachyurus

inferredcites →https://doi.org/10.2343/geochemj.2.0299openalex-snapshot

Late Pleistocene variation in lignin and fatty acids from core TKN-2004 in a small mountain basin in central Japan

inferredcites →https://doi.org/10.3106/041.035.0206openalex-snapshot

Mitochondrial Phylogeography and Population History of the Large Japanese Wood Mouse (Apodemus speciosus) on Sado Island, Japan

inferredcites →https://doi.org/10.4116/jaqua.49.241openalex-snapshot

Vegetation and climate history in Sakhalin and Hokkaido: Migration, rise and fall of plants inferred from pollen records

inferredcites →https://doi.org/10.7717/peerj.821openalex-snapshot

Prolonged decay of molecular rate estimates for metazoan mitochondrial DNA

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/jmammal/gyae075zenodo-depositor-declared

Asian Mus musculus: subspecies divergence, genetic diversity, and historical biogeography

inferred← citeshttps://doi.org/10.1007/s10336-018-1573-9openalex-snapshot

Quaternary-related genetic differentiation and parallel population dynamics of the Eurasian Jay (Garrulus glandarius) in the circum-Japan Sea region

inferred← citeshttps://doi.org/10.1007/s10914-020-09519-4openalex-snapshot

Late Quaternary Environmental and Human Impacts on the Mitochondrial DNA Diversity of Four Commensal Rodents in Myanmar

inferred← citeshttps://doi.org/10.1007/s13364-020-00491-1openalex-snapshot

Species and genetic diversity of Bandicota (Murinae, Rodentia) from Myanmar based on mitochondrial and nuclear gene sequences

inferred← citeshttps://doi.org/10.1016/j.ceramint.2021.04.100openalex-snapshot

Evolution of hierarchically formed petal-like 3 dimensional layer structures for SnS2 via ratio control of Sn/thiourea and their electrochemical charge storage behavior

inferred← citeshttps://doi.org/10.1016/j.ympev.2019.04.003openalex-snapshot

Contrasting phylogeographic histories between the continent and islands of East Asia: Massive mitochondrial introgression and long-term isolation of hares (Lagomorpha: Lepus)

inferred← citeshttps://doi.org/10.1038/s41437-020-00364-yopenalex-snapshot

House mouse Mus musculus dispersal in East Eurasia inferred from 98 newly determined complete mitochondrial genome sequences

inferred← citeshttps://doi.org/10.1093/biolinnean/blag022openalex-snapshot

Periodic mitochondrial DNA divergence in mammals shaped by Middle Pleistocene climate cycles

inferred← citeshttps://doi.org/10.1093/biolinnean/blx076openalex-snapshot

Heterogeneous genetic make-up of Japanese house mice (Mus musculus) created by multiple independent introductions and spatio-temporally diverse hybridization processes

inferred← citeshttps://doi.org/10.1093/jmammal/gyz093openalex-snapshot

Late Pleistocene climate change and population dynamics of Japanese Myodes voles inferred from mitochondrial cytochrome b sequences

inferred← citeshttps://doi.org/10.1093/mollus/eyaa016openalex-snapshot

Genetic evidence illuminates the origin and global spread of the slug Deroceras invadens

inferred← citeshttps://doi.org/10.1101/2021.03.21.436340openalex-snapshot

Genetic characteristics of Apodemus speciosus at Akiyoshidai Quasi-National Park in Yamaguchi Prefecture

inferred← citeshttps://doi.org/10.1101/2024.08.19.608589openalex-snapshot

Phylogeographic Insights into Lion Evolution: Unraveling the Genetic Diversity and Lineage Divergence of Panthera leo

inferred← citeshttps://doi.org/10.1186/s40851-021-00169-9openalex-snapshot

Influence of Quaternary environmental changes on mole populations inferred from mitochondrial sequences and evolutionary rate estimation

inferred← citeshttps://doi.org/10.1266/ggs.21-00079openalex-snapshot

Temporal dynamics of mildly deleterious nonsynonymous substitutions in mitochondrial gene sequences in rodents and moles

inferred← citeshttps://doi.org/10.1266/ggs.24-00145openalex-snapshot

Impact of late Quaternary climate change on the demographic history of Japanese field voles and hares revealed by mitochondrial cytochrome b sequences

inferred← citeshttps://doi.org/10.1266/ggs.25-00041openalex-snapshot

Species composition and mtDNA diversity of small mammals in the northern and central parts of Japan shaped by Quaternary environmental fluctuations

inferred← citeshttps://doi.org/10.1292/jvms.21-0197openalex-snapshot

Histological analysis of implanted embryos in large Japanese field mouse (Apodemus speciosus) and estimation of developmental stage

inferred← citeshttps://doi.org/10.1537/ase.201201openalex-snapshot

The time-dependent evolutionary rate of mitochondrial DNA in small mammals inferred from biogeographic calibration points with reference to the late Quaternary environmental changes in the Japanese archipelago

inferred← citeshttps://doi.org/10.2108/zs170086openalex-snapshot

Mitochondrial Genetic Diversity and Phylogeography ofMus musculus castaneusin Northern Punjab, Pakistan

inferred← citeshttps://doi.org/10.2108/zs180161openalex-snapshot

Molecular Characterization of Species of the Subgenus Mus from Myanmar

inferred← citeshttps://doi.org/10.2108/zs200017openalex-snapshot

Genetic Diversity of Ligidium Isopods in Hokkaido and Niigata, Northern Japan, Based on Mitochondrial DNA Analysis

inferred← citeshttps://doi.org/10.2108/zs230030openalex-snapshot

Phylogenetics and Population Genetics of the Asian House Shrew, Suncus murinus–S. montanus Species Complex, Inferred From Whole-Genome and Mitochondrial DNA Sequences, with Special Reference to the Ryukyu Archipelago, Japan

inferred← citeshttps://doi.org/10.2108/zs230065openalex-snapshot

Region-Specific Genetic Diversity of Black Rats (Rattus rattus Complex) in Southeast and East Asia Shaped by Rapid Population Expansion Events

inferred← citeshttps://doi.org/10.3106/ms2020-0033openalex-snapshot

Evolutionary and Anthropogenic Factors Affecting the Mitochondrial D-loop Genetic Diversity of Apodemus and Myodes Rodents on the Northern Slope of Mt. Fuji

inferred← citeshttps://doi.org/10.3106/ms2021-0050openalex-snapshot

Quaternary Environmental Changes Shaped Mitochondrial DNA Diversity in the Large Japanese Wood Mouse Apodemus speciosus in Hokkaido, Japan

inferred← citeshttps://doi.org/10.3106/ms2022-0013openalex-snapshot

Estimation of Evolutionary Rates for Mitochondrial Control Region in Sibling Species of Myodes (Rodentia) by Calibrations Based on Island Formation

inferred← citeshttps://doi.org/10.3106/ms2023-0069openalex-snapshot

Evolutionary History of Geographically Isolated Populations of the Lesser Japanese Mole (Mogera imaizumii) Inferred from Mitochondrial Cytochrome b Gene Sequences

inferred← citeshttps://doi.org/10.33484/sinopfbd.1522122openalex-snapshot

Mitochondrial Genetic Diversity and Historical Population Dynamics of the Bank Vole $Clethrionomys$ $glareolus$ in Northern Anatolia: Insights from $Cytb$ and $COI$ Gene Sequences

inferred← citeshttps://doi.org/10.3390/genes12050642openalex-snapshot

Late Pleistocene Expansion of Small Murid Rodents across the Palearctic in Relation to the Past Environmental Changes

inferred← citeshttps://doi.org/10.6084/m9.figshare.14037434openalex-snapshot

Additional file 1 of Influence of Quaternary environmental changes on mole populations inferred from mitochondrial sequences and evolutionary rate estimation

inferred← citeshttps://doi.org/10.6084/m9.figshare.14037437openalex-snapshot

Additional file 2 of Influence of Quaternary environmental changes on mole populations inferred from mitochondrial sequences and evolutionary rate estimation

inferred← citeshttps://doi.org/10.6084/m9.figshare.14037440openalex-snapshot

Additional file 3 of Influence of Quaternary environmental changes on mole populations inferred from mitochondrial sequences and evolutionary rate estimation

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