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Molecular and Morphological Signatures of Chordate Development: Two Distinct Pathways, One Tunicate

https://doi.org/10.2139/ssrn.3493180
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Neurogenic role of the neural gland in the development of the ascidian,Botryllus schlosseri (Tunicata, Urochordata)
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Mechanism of neurogenesis during the embryonic development of a tunicate
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Evolutionary Aspects of Primordial Germ Cell Formation
inferredcites →https://doi.org/10.1002/ar.1091180202openalex-snapshot
The identification, origin, and migration of the primordial germ cells in the mouse embryo
inferredcites →https://doi.org/10.1002/bies.20462openalex-snapshot
Common and divergent pathways in alternative developmental processes of ascidians
inferredcites →https://doi.org/10.1002/cne.10097openalex-snapshot
Development of the motor nervous system in ascidians
inferredcites →https://doi.org/10.1002/dvdy.21037openalex-snapshot
Botryllus schlosseri : A model ascidian for the study of asexual reproduction
inferredcites →https://doi.org/10.1002/dvdy.21188openalex-snapshot
A web‐based interactive developmental table for the ascidian Ciona intestinalis, including 3D real‐image embryo reconstructions: I. From fertilized egg to hatching larva
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Germline cell formation and gonad regeneration in solitary and colonial ascidians
inferredcites →https://doi.org/10.1002/dvg.22824openalex-snapshot
Metamorphosis in solitary ascidians
inferredcites →https://doi.org/10.1002/jez.1402070212openalex-snapshot
Sexual differentiation and germ cell transfer in the colonial ascidian Botryllus schlosseri
inferredcites →https://doi.org/10.1006/dbio.1996.8442openalex-snapshot
Induction of Trunk Lateral Cells, the Blood Cell Precursors, during Ascidian Embryogenesis
inferredcites →https://doi.org/10.1007/bf00323577openalex-snapshot
A morphological and immunohistochemical study of programmed cell death in Botryllus schlosseri (Tunicata, Ascidiacea)
inferredcites →https://doi.org/10.1016/0012-1606(75)90088-3openalex-snapshot
Determination of polarity and bilateral asymmetry in palleal and vascular buds of the ascidian Botryllus schlosseri
inferredcites →https://doi.org/10.1016/0012-1606(83)90201-4openalex-snapshot
The embryonic cell lineage of the nematode Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/0092-8674(86)90856-1openalex-snapshot
Retroviruses as probes for mammalian development: Allocation of cells to the somatic and germ cell lineages
inferredcites →https://doi.org/10.1016/0092-8674(94)90290-9openalex-snapshot
Hox genes in vertebrate development
inferredcites →https://doi.org/10.1016/j.cdev.2024.203940openalex-snapshot
Induction of Embryonic Primordia by Implantation of Organizers from a Different Species
inferredcites →https://doi.org/10.1016/j.cell.2005.10.026openalex-snapshot
Stem Cells Are Units of Natural Selection in a Colonial Ascidian
inferredcites →https://doi.org/10.1016/j.cell.2018.01.029openalex-snapshot
The Human Transcription Factors
inferredcites →https://doi.org/10.1016/j.dci.2016.04.011openalex-snapshot
Recurrent phagocytosis-induced apoptosis in the cyclical generation change of the compound ascidian Botryllus schlosseri
inferredcites →https://doi.org/10.1016/j.devcel.2012.11.010openalex-snapshot
Repeated, Long-Term Cycling of Putative Stem Cells between Niches in a Basal Chordate
inferredcites →https://doi.org/10.1016/j.stem.2008.07.023openalex-snapshot
Identification of the Endostyle as a Stem Cell Niche in a Colonial Chordate
inferredcites →https://doi.org/10.1016/j.ydbio.2009.04.025openalex-snapshot
Vasa and the germ line lineage in a colonial urochordate
inferredcites →https://doi.org/10.1016/j.ydbio.2018.09.009openalex-snapshot
Sixty years of experimental studies on the blastogenesis of the colonial tunicate Botryllus schlosseri
inferredcites →https://doi.org/10.1016/s0092-8674(00)81692-xopenalex-snapshot
Stem Cells
inferredcites →https://doi.org/10.1038/295499a0openalex-snapshot
Protochordate allorecognition is controlled by a MHC-like gene system
inferredcites →https://doi.org/10.1038/322456a0openalex-snapshot
The genetic control and consequences of kin recognition by the larvae of a colonial marine invertebrate
inferredcites →https://doi.org/10.1038/345686a0openalex-snapshot
A POU-domain transcription factor in early stem cells and germ cells of the mammalian embryo
inferredcites →https://doi.org/10.1038/nature12632openalex-snapshot
Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition
inferredcites →https://doi.org/10.1038/nature16150openalex-snapshot
Hemichordate genomes and deuterostome origins
inferredcites →https://doi.org/10.1038/ncomms1248openalex-snapshot
Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis
inferredcites →https://doi.org/10.1038/s41467-019-10668-1openalex-snapshot
MorphoNet: an interactive online morphological browser to explore complex multi-scale data
inferredcites →https://doi.org/10.1038/s41467-019-11561-7openalex-snapshot
A conserved regulatory program initiates lateral plate mesoderm emergence across chordates
inferredcites →https://doi.org/10.1038/s41556-017-0017-8openalex-snapshot
Segregation of mitochondrial DNA heteroplasmy through a developmental genetic bottleneck in human embryos
inferredcites →https://doi.org/10.1038/s41559-017-0318-0openalex-snapshot
Constrained vertebrate evolution by pleiotropic genes
inferredcites →https://doi.org/10.1038/s41586-018-0590-4openalex-snapshot
Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
inferredcites →https://doi.org/10.1038/s41586-018-0734-6openalex-snapshot
Amphioxus functional genomics and the origins of vertebrate gene regulation
inferredcites →https://doi.org/10.1038/s41586-018-0783-xopenalex-snapshot
Complex mammalian-like haematopoietic system found in a colonial chordate
inferredcites →https://doi.org/10.1038/s41586-019-1127-1openalex-snapshot
The emergent landscape of the mouse gut endoderm at single-cell resolution
inferredcites →https://doi.org/10.1038/s41586-019-1184-5openalex-snapshot
Molecular recording of mammalian embryogenesis
inferredcites →https://doi.org/10.1038/s41586-019-1385-yopenalex-snapshot
Comprehensive single-cell transcriptome lineages of a proto-vertebrate
inferredcites →https://doi.org/10.1038/srep06460openalex-snapshot
Testing an unusual in vivo vessel network model: a method to study angiogenesis in the colonial tunicate Botryllus schlosseri
inferredcites →https://doi.org/10.1046/j.1463-6395.2000.00054.xopenalex-snapshot
Evolution of cerebral vesicles and their sensory organs in an ascidian larva
inferredcites →https://doi.org/10.1073/pnas.0810325105openalex-snapshot
Two-step oligoclonal development of male germ cells
inferredcites →https://doi.org/10.1073/pnas.1505464112openalex-snapshot
Stem cells are units of natural selection for tissue formation, for germline development, and in cancer development
inferredcites →https://doi.org/10.1073/pnas.160274797openalex-snapshot
The human VASA gene is specifically expressed in the germ cell lineage
inferredcites →https://doi.org/10.1073/pnas.93.26.15254openalex-snapshot
Somatic and germ cell parasitism in a colonial ascidian: Possible role for a highly polymorphic allorecognition system
inferredcites →https://doi.org/10.1073/pnas.96.16.9148openalex-snapshot
Heritable germ and somatic cell lineage competitions in chimeric colonial protochordates
inferredcites →https://doi.org/10.1080/11250007109429158openalex-snapshot
The Circulatory System in the Blastozooid of the Colonial Ascidian Botryllus Schlosseri (Pallas)
inferredcites →https://doi.org/10.1089/omi.2015.0168openalex-snapshot
GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing, RNAseq and Microarray Data
inferredcites →https://doi.org/10.1093/acprof:oso/9780199682201.003.0053openalex-snapshot
Tunicata
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/bts480openalex-snapshot
Snakemake—a scalable bioinformatics workflow engine
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
inferredcites →https://doi.org/10.1096/fj.06-7337comopenalex-snapshot
Striving for normality: whole body regeneration through a series of abnormal generations
inferredcites →https://doi.org/10.1111/j.1463-6395.1978.tb01029.xopenalex-snapshot
Blood Cell Ultrastructure of the Ascidian Botryllus schlosseri.
inferredcites →https://doi.org/10.1111/j.1463-6395.1983.tb00637.xopenalex-snapshot
Blood Cell Ultrastructure of the Ascidian Botryllus schlosseri L. II. Pigment Cells
inferredcites →https://doi.org/10.1126/science.1069883openalex-snapshot
A Genomic Regulatory Network for Development
inferredcites →https://doi.org/10.1126/science.1238036openalex-snapshot
Identification of a Colonial Chordate Histocompatibility Gene
inferredcites →https://doi.org/10.1126/science.2898810openalex-snapshot
Purification and Characterization of Mouse Hematopoietic Stem Cells
inferredcites →https://doi.org/10.1126/science.aac6948openalex-snapshot
Suboptimization of developmental enhancers
inferredcites →https://doi.org/10.1126/science.aaq0681openalex-snapshot
Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration
inferredcites →https://doi.org/10.1126/science.aaq1736openalex-snapshot
Cell type transcriptome atlas for the planarian Schmidtea mediterranea
inferredcites →https://doi.org/10.1126/science.aar3131openalex-snapshot
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
inferredcites →https://doi.org/10.1126/science.aar4362openalex-snapshot
Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo
inferredcites →https://doi.org/10.1126/science.aar5780openalex-snapshot
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution
inferredcites →https://doi.org/10.1146/annurev.cellbio.14.1.59openalex-snapshot
MECHANISMS OF WNT SIGNALING IN DEVELOPMENT
inferredcites →https://doi.org/10.1186/gb-2000-1-3-reviews1017openalex-snapshot
The function and regulation of vasa-like genes in germ-cell development.
inferredcites →https://doi.org/10.1186/s12915-015-0218-1openalex-snapshot
High-precision morphology: bifocal 4D-microscopy enables the comparison of detailed cell lineages of two chordate species separated for more than 525 million years
inferredcites →https://doi.org/10.1242/dev.02446openalex-snapshot
Dynamic redistribution of vasa homolog and exclusion of somatic cell determinants during germ cell specification in Ciona intestinalis
inferredcites →https://doi.org/10.1242/dev.037754openalex-snapshot
Early lineage specification of long-lived germline precursors in the colonial ascidianBotryllus schlosseri
inferredcites →https://doi.org/10.1242/dev.083147openalex-snapshot
Hematopoiesis
inferredcites →https://doi.org/10.1242/dev.110.2.521openalex-snapshot
Primordial germ cells in the mouse embryo during gastrulation
inferredcites →https://doi.org/10.1242/dev.127.3.503openalex-snapshot
piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells
inferredcites →https://doi.org/10.1242/dev.1994.supplement.135openalex-snapshot
Temporal colinearity and the phylotypic progression: a basis for the stability of a vertebrate Bauplan and the evolution of morphologies through heterochrony
inferredcites →https://doi.org/10.1371/journal.pone.0096434openalex-snapshot
Ontology for the Asexual Development and Anatomy of the Colonial Chordate Botryllus schlosseri
inferredcites →https://doi.org/10.1530/jrf.0.1160379openalex-snapshot
Expression of the homophilic adhesion molecule, Ep-CAM, in the mammalian germ line
inferredcites →https://doi.org/10.2108/zs140117openalex-snapshot
Cell Lineages and Fate Maps in Tunicates: Conservation and Modification
inferredcites →https://doi.org/10.2174/138161208783378798openalex-snapshot
A Tale of Death and Life: Natural Apoptosis in the Colonial Ascidian Botryllus schlosseri (Urochordata, Ascidiacea)
inferredcites →https://doi.org/10.2307/1541383openalex-snapshot
GROWTH AND SEXUAL MATURATION OF LABORATORY-CULTURED MONTEREYBOTRYLLUS SCHLOSSERI
inferredcites →https://doi.org/10.4081/952openalex-snapshot
Cytochemical properties of Botryllus schlosseri haemocytes: indications for morpho-functional characterisation.
inferredcites →https://doi.org/10.4161/cc.4.12.2209openalex-snapshot
Blimp1 and the Emergence of the Germ Line during Development in the Mouse
inferredcites →https://doi.org/10.5962/bhl.title.4801openalex-snapshot
The organization and cell-lineage of the ascidian egg
inferredcites →https://doi.org/10.7554/elife.00569openalex-snapshot
The genome sequence of the colonial chordate, Botryllus schlosseri

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.coi.2019.12.006openalex-snapshot
Evolutionary perspective on the hematopoietic system through a colonial chordate: allogeneic immunity and hematopoiesis
inferred← citeshttps://doi.org/10.1101/2020.12.08.417055openalex-snapshot
Global Age-Specific Patterns of Cyclic Gene Expression Revealed by Tunicate Transcriptome Atlas
inferred← citeshttps://doi.org/10.3389/fcell.2021.652466openalex-snapshot
And Then There Were Three…: Extreme Regeneration Ability of the Solitary Chordate Polycarpa mytiligera
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