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Identification of the 18 World War II Executed Citizens of Adele, Rethymnon, Crete Using an Ancient DNA Approach and Low Coverage Genomes

https://doi.org/10.2139/ssrn.4647981
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Fast and accurate short read alignment with Burrows–Wheeler transform
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The Sequence Alignment/Map format and SAMtools
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bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
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Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data
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Twelve years of SAMtools and BCFtools
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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Haplogrep 3 - an interactive haplogroup classification and analysis platform
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Mitochondrial sequences of the extinct Cypriot pygmy hippopotamus confirm its phylogenetic placement
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Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
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A systematic investigation of human DNA preservation in medieval skeletons
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KIN: A method to infer relatedness from low-coverage ancient DNA
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The Allen Ancient DNA Resource (AADR): A curated compendium of ancient human genomes
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Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
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Identifying a living great-grandson of the Lakota Sioux leader Tatanka Iyotake (Sitting Bull)
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The genetic legacy of African Americans from Catoctin Furnace
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Improving ancient DNA read mapping against modern reference genomes
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Computational challenges in the analysis of ancient DNA
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ANGSD: Analysis of Next Generation Sequencing Data
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Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA
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Sustainable data analysis with Snakemake
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Population Structure and Eigenanalysis
inferredcites →https://doi.org/10.1371/journal.pone.0129102openalex-extracted
Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone
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Comparing Ancient DNA Preservation in Petrous Bone and Tooth Cementum
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Estimating genetic kin relationships in prehistoric populations
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The Scope of Anthropological Contributions to Human Rights Investigations
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A Minimally-Invasive Method for Sampling Human Petrous Bones from the Cranial Base for Ancient DNA Analysis
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Identifying Human Remains from 20th Century Warfare: A State of the Field Essay
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Ancient DNA Methods Improve Forensic DNA Profiling of Korean War and World War II Unknowns
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Novel Substrates as Sources of Ancient DNA: Prospects and Hurdles
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The Archaeology of Human Bones
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The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes
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HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph
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