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Ancient DNA Methods Improve Forensic DNA Profiling of Korean War and World War II Unknowns

https://doi.org/10.3390/genes13010129
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Impact of DNA degradation on massively parallel sequencing-based autosomal STR, iiSNP, and mitochondrial DNA typing systems
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Damage patterns observed in mtDNA control region MPS data for a range of template concentrations and when using different amplification approaches
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Genetic genealogy for cold case and active investigations
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Forensic genetic investigation of human skeletal remains recovered from the La Belle shipwreck
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Considering DNA damage when interpreting mtDNA heteroplasmy in deep sequencing data
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Performance evaluation of a mitogenome capture and Illumina sequencing protocol using non-probative, case-type skeletal samples: Implications for the use of a positive control in a next-generation sequencing procedure
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AQME: A forensic mitochondrial DNA analysis tool for next-generation sequencing data
inferredcites →https://doi.org/10.1016/j.fsigen.2018.02.015openalex-snapshot
Repair of DNA damage caused by cytosine deamination in mitochondrial DNA of forensic case samples
inferredcites →https://doi.org/10.1016/j.fsigen.2019.102205openalex-snapshot
Impact of the sequencing method on the detection and interpretation of mitochondrial DNA length heteroplasmy
inferredcites →https://doi.org/10.1016/j.fsigen.2020.102291openalex-snapshot
Mitochondrial DNA haplogrouping to assist with the identification of unknown service members from the World War II Battle of Tarawa
inferredcites →https://doi.org/10.1016/j.fsigen.2021.102538openalex-snapshot
Progress in forensic bone DNA analysis: Lessons learned from ancient DNA
inferredcites →https://doi.org/10.1016/j.fsigen.2021.102636openalex-snapshot
Extended kinship analysis of historical remains using SNP capture
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Basic Local Alignment Search Tool
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Lavish are the Dead: Re-envisioning Japan's Korean War
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Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA
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A mitochondrial genome sequence of a hominin from Sima de los Huesos
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Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins
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The genetic history of Ice Age Europe
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Reconstructing the genetic history of late Neanderthals
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Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry
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Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave
inferredcites →https://doi.org/10.1038/s41596-018-0050-5openalex-snapshot
Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing
inferredcites →https://doi.org/10.1038/s41596-020-0338-0openalex-snapshot
Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA
inferredcites →https://doi.org/10.1073/pnas.0704665104openalex-snapshot
Patterns of damage in genomic DNA sequences from a Neandertal
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DNA analysis of an early modern human from Tianyuan Cave, China
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Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
inferredcites →https://doi.org/10.1093/nar/gku699openalex-snapshot
leeHom: adaptor trimming and merging for Illumina sequencing reads
inferredcites →https://doi.org/10.1093/nar/gkx033openalex-snapshot
Single-stranded DNA library preparation from highly degraded DNA using T4 DNA ligase
inferredcites →https://doi.org/10.1093/nar/gkx361openalex-snapshot
A new model for ancient DNA decay based on paleogenomic meta-analysis
inferredcites →https://doi.org/10.1101/gr.5969107openalex-snapshot
MEGAN analysis of metagenomic data
inferredcites →https://doi.org/10.1111/1556-4029.14050openalex-snapshot
Extraction of DNA from Skeletonized Postcranial Remains: A Discussion of Protocols and Testing Modalities
inferredcites →https://doi.org/10.1111/1755-0998.13433openalex-snapshot
Successful application of ancient DNA extraction and library construction protocols to museum wet collection specimens
inferredcites →https://doi.org/10.1111/1755-0998.13518openalex-snapshot
Performance and automation of ancient DNA capture with RNA hyRAD probes
inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1126/science.1224344openalex-snapshot
A High-Coverage Genome Sequence from an Archaic Denisovan Individual
inferredcites →https://doi.org/10.1126/science.aam9695openalex-snapshot
Neandertal and Denisovan DNA from Pleistocene sediments
inferredcites →https://doi.org/10.1126/science.abf1667openalex-snapshot
Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments
inferredcites →https://doi.org/10.1186/s12864-019-6355-0openalex-snapshot
A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos
inferredcites →https://doi.org/10.1186/s13059-019-1891-0openalex-snapshot
Improved metagenomic analysis with Kraken 2
inferredcites →https://doi.org/10.1186/s13059-020-02123-yopenalex-snapshot
AuthentiCT: a model of ancient DNA damage to estimate the proportion of present-day DNA contamination
inferredcites →https://doi.org/10.1353/jmh.2008.0013openalex-snapshot
Recovering the Korean War Dead, 1950–1958: Graves Registration, Forensic Anthropology, and Wartime Memorialization
inferredcites →https://doi.org/10.1371/journal.pone.0000537openalex-snapshot
The Isolation of Nucleic Acids from Fixed, Paraffin-Embedded Tissues–Which Methods Are Useful When?
inferredcites →https://doi.org/10.1371/journal.pone.0034131openalex-snapshot
Temporal Patterns of Nucleotide Misincorporations and DNA Fragmentation in Ancient DNA
inferredcites →https://doi.org/10.1525/tph.2010.32.1.59openalex-snapshot
Bodily Matters Above and Below Ground: The Treatment of American Remains from the Korean War
inferredcites →https://doi.org/10.18632/oncotarget.10827openalex-snapshot
Single-strand DNA library preparation improves sequencing of formalin-fixed and paraffin-embedded (FFPE) cancer DNA
inferredcites →https://doi.org/10.2144/000114320openalex-snapshot
Reducing Microbial and Human Contamination in DNA Extractions from Ancient Bones and Teeth
inferredcites →https://doi.org/10.3390/genes12020146openalex-snapshot
Evaluation of DNA Extraction Methods Developed for Forensic and Ancient DNA Applications Using Bone Samples of Different Age
inferredcites →https://doi.org/10.7717/peerj.7314openalex-snapshot
Mitochondrial DNA in human identification: a review

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Identification of the 18 World War II Executed Citizens of Adele, Rethymnon, Crete Using an Ancient DNA Approach and Low Coverage Genomes
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Effects and considerations of multiplexing ForenSeq Kintelligence libraries with a negative control
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The Korean War Identification Project: 30 years of expanding scope and complexity in the accounting of American war dead
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Solving the two-decades-old murder case through joint application of ZooMS and ancient DNA approaches
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