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Genomic Epidemiology Of Haemophilus Influenzae Infections at Maela Camp for Displaced Persons, Thailand: A Prospective Paediatric Cohort Study

https://doi.org/10.2139/ssrn.4660400
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Outgoing claims: the papers this work cites, builds on, or argues with.

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High diversity of invasive Haemophilus influenzae isolates in France and the emergence of resistance to third generation cephalosporins by alteration of ftsI gene
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Causes of severe pneumonia requiring hospital admission in children without HIV infection from Africa and Asia: the PERCH multi-country case-control study
inferredcites →https://doi.org/10.1016/s1473-3099(14)70734-0openalex-extracted
Non-typeable Haemophilus influenzae, an under-recognised pathogen
inferredcites →https://doi.org/10.1038/ng.2895openalex-extracted
Dense genomic sampling identifies highways of pneumococcal recombination
inferredcites →https://doi.org/10.1038/s41598-018-32973-3openalex-extracted
Patients with Chronic Obstructive Pulmonary Disease harbour a variation of Haemophilus species
inferredcites →https://doi.org/10.1093/bioinformatics/btx610openalex-extracted
Phandango: an interactive viewer for bacterial population genomics
inferredcites →https://doi.org/10.1093/cid/cir235openalex-extracted
Microbiology of Bronchoalveolar Lavage Fluid in Children With Acute Nonresponding or Recurrent Community-Acquired Pneumonia: Identification of Nontypeable Haemophilus influenzae as a Major Pathogen
inferredcites →https://doi.org/10.1093/gigascience/giab079openalex-extracted
A high-throughput multiplexing and selection strategy to complete bacterial genomes
inferredcites →https://doi.org/10.1093/molbev/msp077openalex-extracted
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
inferredcites →https://doi.org/10.1093/nar/gku1196openalex-extracted
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
inferredcites →https://doi.org/10.1099/mgen.0.000083openalex-extracted
Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
inferredcites →https://doi.org/10.1099/mgen.0.000209openalex-extracted
Pneumococcal vaccine impacts on the population genomics of non-typeable Haemophilus influenzae
inferredcites →https://doi.org/10.1101/038190openalex-extracted
inferredcites →https://doi.org/10.1101/2020.01.28.922989openalex-extracted
Producing Polished Prokaryotic Pangenomes with the Panaroo Pipeline
inferredcites →https://doi.org/10.1101/2023.08.04.551407openalex-extracted
inferredcites →https://doi.org/10.1101/gr.241455.118openalex-extracted
Fast and flexible bacterial genomic epidemiology with PopPUNK
inferredcites →https://doi.org/10.1128/cmr.00028-21openalex-extracted
Invasive Haemophilus influenzae Infections after 3 Decades of Hib Protein Conjugate Vaccine Use
inferredcites →https://doi.org/10.1128/jb.187.13.4627-4636.2005openalex-extracted
Genomic Sequence of an Otitis Media Isolate of Nontypeable Haemophilus influenzae : Comparative Study with H. influenzae Serotype d, Strain KW20
inferredcites →https://doi.org/10.1128/spectrum.02579-21openalex-extracted
Antimicrobial Susceptibility Survey of Invasive Haemophilus influenzae in the United States in 2016
inferredcites →https://doi.org/10.1186/s41479-017-0033-2openalex-extracted
The evidence for non-typeable Haemophilus influenzae as a causative agent of childhood pneumonia
inferredcites →https://doi.org/10.1371/journal.pone.0036226openalex-extracted
Burden of Disease Caused by Otitis Media: Systematic Review and Global Estimates
inferredcites →https://doi.org/10.1371/journal.pone.0038271openalex-extracted
A Longitudinal Study of Streptococcus pneumoniae Carriage in a Cohort of Infants and Their Mothers on the Thailand-Myanmar Border
inferredcites →https://doi.org/10.1371/journal.pone.0054026openalex-extracted
High Rates of Pneumonia in Children under Two Years of Age in a South East Asian Refugee Population
inferredcites →https://doi.org/10.1371/journal.pone.0167725openalex-extracted
Increased Nasopharyngeal Density and Concurrent Carriage of Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis Are Associated with Pneumonia in Febrile Children
inferredcites →https://doi.org/10.3389/fmicb.2022.1030242openalex-extracted
Evaluation of molecular typing for national surveillance of invasive clinical Haemophilus influenzae isolates from Denmark
inferredcites →https://doi.org/10.1093/nargab/lqae061openalex-snapshot
Detecting co-selection through excess linkage disequilibrium in bacterial genomes
inferredcites →https://doi.org/10.1099/mgen.0.000056openalex-snapshot
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
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