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https://doi.org/10.2139/ssrn.4680834
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/j.2050-0416.2006.tb00247.xopenalex-extracted
A Review of Hop Resistance in Beer Spoilage Lactic Acid Bacteria
inferredcites →https://doi.org/10.1007/978-1-4939-9173-0_14openalex-extracted
BUSCO: Assessing Genome Assembly and Annotation Completeness
inferredcites →https://doi.org/10.1007/s10123-021-00189-7openalex-extracted
Hi-C deconvolution of a textile dye–related microbiome reveals novel taxonomic landscapes and links phenotypic potential to individual genomes
inferredcites →https://doi.org/10.1016/b978-0-444-52149-1.00007-0openalex-extracted
Methods for Isolation, Phenotypic Characterization and Maintenance of Yeasts
inferredcites →https://doi.org/10.1016/j.cell.2016.08.020openalex-extracted
Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
inferredcites →https://doi.org/10.1016/j.cels.2016.07.002openalex-extracted
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
inferredcites →https://doi.org/10.1016/j.fm.2020.103513openalex-extracted
Inactivation kinetics of beer spoilage bacteria (Lactobacillus brevis, Lactobacillus casei, and Pediococcus damnosus) during acid washing of brewing yeast
inferredcites →https://doi.org/10.1016/j.fm.2020.103658openalex-extracted
Characteristics of bacterial and yeast microbiomes in spontaneous and mixed-fermentation beer and cider
inferredcites →https://doi.org/10.1016/j.foodres.2018.05.006openalex-extracted
Analyses of microbial community of naturally homemade soybean pastes in Liaoning Province of China by Illumina Miseq Sequencing
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2020.109030openalex-extracted
Description of the temporal dynamics in microbial community composition and beer chemistry in sour beer production via barrel ageing of finished beers
inferredcites →https://doi.org/10.1016/j.jff.2021.104572openalex-extracted
Yogurt fortified with vitamins and probiotics impacts the frequency of upper respiratory tract infections but not gut microbiome: A multicenter double-blind placebo controlled randomized study
inferredcites →https://doi.org/10.1038/ncomms11257openalex-extracted
Fast and sensitive taxonomic classification for metagenomics with Kaiju
inferredcites →https://doi.org/10.1038/s41564-020-00816-5openalex-extracted
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
inferredcites →https://doi.org/10.1038/s41564-020-00834-3openalex-extracted
Community-led, integrated, reproducible multi-omics with anvi’o
inferredcites →https://doi.org/10.1038/s41575-020-00390-5openalex-extracted
The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on fermented foods
inferredcites →https://doi.org/10.1038/s43016-020-0129-3openalex-extracted
Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality
inferredcites →https://doi.org/10.1080/03610470.2020.1782101openalex-extracted
Emergence of New Spoilage Microorganisms in the Brewing Industry and Development of Microbiological Quality Control Methods to Cope with This Phenomenon: A Review
inferredcites →https://doi.org/10.1080/03610470.2021.1997280openalex-extracted
Genomic Insights into the Adaptability of the Spoilage Bacterium Lactobacillus acetotolerans CN247 to the Beer Microenvironment
inferredcites →https://doi.org/10.1089/cmb.2021.0439openalex-extracted
Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.755openalex-extracted
Profile hidden Markov models.
inferredcites →https://doi.org/10.1093/bioinformatics/btr010openalex-extracted
A novel hybrid gene prediction method employing protein multiple sequence alignments
inferredcites →https://doi.org/10.1093/bioinformatics/btr011openalex-extracted
A fast, lock-free approach for efficient parallel counting of occurrences of k -mers
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-extracted
QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-extracted
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btz848openalex-extracted
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
inferredcites →https://doi.org/10.1093/molbev/msab199openalex-extracted
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
inferredcites →https://doi.org/10.1093/molbev/msu037openalex-extracted
A High-Definition View of Functional Genetic Variation from Natural Yeast Genomes
inferredcites →https://doi.org/10.1093/nar/gkl200openalex-extracted
AUGUSTUS: ab initio prediction of alternative transcripts
inferredcites →https://doi.org/10.1099/mgen.0.000206openalex-extracted
MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies
inferredcites →https://doi.org/10.1101/150722openalex-extracted
Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-extracted
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/1750-3841.14992openalex-extracted
Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics
inferredcites →https://doi.org/10.1126/science.aal3327openalex-extracted
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
inferredcites →https://doi.org/10.1128/ec.00115-09openalex-extracted
Complex Nature of the Genome in a Wine Spoilage Yeast, Dekkera bruxellensis
inferredcites →https://doi.org/10.1128/mmbr.00017-08openalex-extracted
Genes and Molecules of Lactobacilli Supporting Probiotic Action
inferredcites →https://doi.org/10.1128/msystems.00522-20openalex-extracted
Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants
inferredcites →https://doi.org/10.1134/s0026261716060102openalex-extracted
Endophytic yeasts in Malus domestica and Pyrus communis fruits under anthropogenic impact
inferredcites →https://doi.org/10.1139/w07-126openalex-extracted
Effect of temperature onBrettanomyces bruxellensis: metabolic and kinetic aspects
inferredcites →https://doi.org/10.1186/s12864-015-1438-zopenalex-extracted
Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment
inferredcites →https://doi.org/10.1186/s12864-019-5783-1openalex-extracted
Comparative genome analysis of the Lactobacillus brevis species
inferredcites →https://doi.org/10.1186/s13059-019-1643-1openalex-extracted
bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes
inferredcites →https://doi.org/10.1186/s13059-019-1891-0openalex-extracted
Improved metagenomic analysis with Kraken 2
inferredcites →https://doi.org/10.1371/journal.pgen.1004161openalex-extracted
Insights into the Dekkera bruxellensis Genomic Landscape: Comparative Genomics Reveals Variations in Ploidy and Nutrient Utilisation Potential amongst Wine Isolates
inferredcites →https://doi.org/10.1371/journal.pone.0119672openalex-extracted
Comparative 3D Genome Structure Analysis of the Fission and the Budding Yeast
inferredcites →https://doi.org/10.1371/journal.pone.0152747openalex-extracted
The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr
inferredcites →https://doi.org/10.1371/journal.pone.0222749openalex-extracted
Brettanomyces bruxellensis wine isolates show high geographical dispersal and long persistence in cellars
inferredcites →https://doi.org/10.3389/fmicb.2015.01177openalex-extracted
Milk kefir: composition, microbial cultures, biological activities, and related products
inferredcites →https://doi.org/10.3389/fmicb.2018.02611openalex-extracted
Genetic Signatures of Dairy Lactobacillus casei Group
inferredcites →https://doi.org/10.3389/fmicb.2021.770323openalex-extracted
Hi-C Metagenomics in the ICU: Exploring Clinically Relevant Features of Gut Microbiome in Chronically Critically Ill Patients
inferredcites →https://doi.org/10.3389/fmicb.2022.868383openalex-extracted
Metagenomic-Metabolomic Mining of Kinema, a Naturally Fermented Soybean Food of the Eastern Himalayas
inferredcites →https://doi.org/10.3390/jof9101020openalex-extracted
Unraveling the Polysaccharide Biosynthesis Potential of Ganoderma lucidum: A Chromosome-Level Assembly Using Hi-C Sequencing
inferredcites →https://doi.org/10.3390/microorganisms8050672openalex-extracted
Unraveling the Microbiota of Natural Black cv. Kalamata Fermented Olives through 16S and ITS Metataxonomic Analysis
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