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Profiling the Faecal Microbiome and its Modulators Across the Lifespan in the Netherlands

https://doi.org/10.2139/ssrn.4757043
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Dietary effects on human gut microbiome diversity
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Species–function relationships shape ecological properties of the human gut microbiome
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The role of the gut microbiota in nutrition and health
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Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
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Individuality and convergence of the infant gut microbiota during the first year of life
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Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders
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Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life
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Health and disease markers correlate with gut microbiome composition across thousands of people
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Taxonomic signatures of cause-specific mortality risk in human gut microbiome
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Modulation of immune responses to vaccination by the microbiota: implications and potential mechanisms
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Bioaccumulation of therapeutic drugs by human gut bacteria
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Combinatorial, additive and dose-dependent drug–microbiome associations
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Towards the biogeography of prokaryotic genes
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Environmental factors shaping the gut microbiome in a Dutch population
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Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
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Effect of host genetics on the gut microbiome in 7,738 participants of the Dutch Microbiome Project
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Depicting the composition of gut microbiota in a population with varied ethnic origins but shared geography
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Regional variation limits applications of healthy gut microbiome reference ranges and disease models
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Influence of the microbiome, diet and genetics on inter-individual variation in the human plasma metabolome
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Metagenome analysis using the Kraken software suite
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Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria
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Gut microbiome pattern reflects healthy ageing and predicts survival in humans
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The Gut Microbiome in Health and Disease
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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
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Composition, variability, and temporal stability of the intestinal microbiota of the elderly
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Microbiota regulates immune defense against respiratory tract influenza A virus infection
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Assessment of fecal DNA extraction protocols for metagenomic studies
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proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
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The gut microbiota and inflammatory bowel disease
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The gut microbiome in health and in disease
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Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine-learning toolbox
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Meta-analyses of studies of the human microbiota
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Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
inferredcites →https://doi.org/10.1126/science.aad3503openalex-extracted
Population-level analysis of gut microbiome variation
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Determining Gut Microbial Dysbiosis: a Review of Applied Indexes for Assessment of Intestinal Microbiota Imbalances
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Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
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Gut Microbiota and Colonization Resistance against Bacterial Enteric Infection
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Genetics, race, ethnicity, and health
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Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates
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Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study
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Third national biobank for population-based seroprevalence studies in the Netherlands, including the Caribbean Netherlands
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Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data
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Microbiome definition re-visited: old concepts and new challenges
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Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
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Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians
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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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Different host factors are associated with patterns in bacterial and fungal gut microbiota in Slovenian healthy cohort
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A general introduction to adjustment for multiple comparisons
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Butyrate-Producing Bacteria and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (MILES)
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Butyrate-Producing Bacteria and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (MILES)
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Impact of Omega-3 Fatty Acids on the Gut Microbiota
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Characteristics of the Gut Bacterial Composition in People of Different Nationalities and Religions
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What is the Healthy Gut Microbiota Composition? A Changing Ecosystem across Age, Environment, Diet, and Diseases
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The Potential of Gut Commensals in Reinforcing Intestinal Barrier Function and Alleviating Inflammation
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Food Components and Dietary Habits: Keys for a Healthy Gut Microbiota Composition
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