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Deciphering the Reticulate Evolution and Phylo-Biogeography of Ant-Ferns Lecanopteris S.S

https://doi.org/10.2139/ssrn.4828563
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A 4000-species dataset provides new insight into the evolution of ferns
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A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families
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Incongruence between gene trees and species trees and phylogenetic signal variation in plastid genes
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Exploring phylogeny of the microsoroid ferns (Polypodiaceae) based on six plastid DNA markers
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Hybrid speciation
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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Greater India Basin hypothesis and a two-stage Cenozoic collision between India and Asia
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Ant–plant interactions evolved through increasing interdependence
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A new Miocene fern ( Palaeosorum : Polypodiaceae) from New Zealand bearing in situ spores of Polypodiisporites
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The complete chloroplast genome of Leptochilus hemionitideus, a traditional Chinese medical fern
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The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern
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The complete chloroplast genome sequence of a typical alpine fern Lepisorus waltonii (Ching) S. L. Yu in Polypodiaceae
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The complete chloroplast genome of Pyrrosia calvata (Polypodiaceae), a traditional Chinese medicinal fern only restricted to Guangxi, China
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The complete mitochondrial genome of Dryopteris crassirhizoma Nakai (Dryopteridaceae, Dryopteris Adanson)
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Phylogenetic Position of the Enigmatic Fern GenusWeatherbya(Polypodiaceae) Revisited: Evidence from Chloroplast and Nuclear Gene Regions and Morphological Data
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The phylogenetic distribution of extrafloral nectaries in plants
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Untangling the reticulate history of species complexes and horticultural breeds in Abelia (Caprifoliaceae)
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treePL: divergence time estimation using penalized likelihood for large phylogenies
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Minimap2: pairwise alignment for nucleotide sequences
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fastp: an ultra-fast all-in-one FASTQ preprocessor
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Dynamism in plastome structure observed across the phylogenetic tree of ferns
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Plastid Phylogenomics Resolve Deep Relationships among Eupolypod II Ferns with Rapid Radiation and Rate Heterogeneity
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RASP 4: Ancestral State Reconstruction Tool for Multiple Genes and Characters
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PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
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The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales
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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
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Chloroplast phylogenomics resolves key relationships in ferns
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Re‐terrestrialization in the phylogeny of epiphytic plant lineages: Microsoroid ferns as a case study
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Phylogeny of the Ants: Diversification in the Age of Angiosperms
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Signals from chloroplasts converge to regulate nuclear gene expression.
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Genomic architecture and introgression shape a butterfly radiation
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Biogeography of the Indo-Australian Archipelago
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Origins and Assembly of Malesian Rainforests
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PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
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Complete plastid genomes from Ophioglossum californicum, Psilotum nudum, and Equisetum hyemale reveal an ancestral land plant genome structure and resolve the position of Equisetales among monilophytes
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The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates
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CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences
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A maximum pseudo-likelihood approach for phylogenetic networks
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Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
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PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
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OrthoFinder: phylogenetic orthology inference for comparative genomics
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GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
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Extrafloral nectary-mediated interactions between insects and plants
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Discordance of Species Trees with Their Most Likely Gene Trees
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The Probability of a Gene Tree Topology within a Phylogenetic Network with Applications to Hybridization Detection
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Phylogenetic and Morphological Analyses Support the Resurrection of Dendroconche and the Recognition of Two New Genera in Polypodiaceae Subfamily Microsoroideae
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Ant-Fern Association in Microgramma megalophylla
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Biogeographic patterns in Southeast Asia: Retrospectives and perspectives
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Deciphering the Reticulate Evolution and Phylo-Biogeography of Ant-Ferns Lecanopteris S.S
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A classification for extant ferns
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Notes on the Ant-Ferns of Lecanopteris sensu stricto in Sulawesi, with the Description of Two New Species
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Structural Variation of Plastomes Provides Key Insight Into the Deep Phylogeny of Ferns
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Phylotranscriptomics Illuminates the Placement of Whole Genome Duplications and Gene Retention in Ferns
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Reconstructing patterns of reticulate evolution in plants
inferredcites →https://doi.org/10.3732/ajb.93.2.217openalex-snapshot
Phylogeny and biogeography of the staghorn fern genus Platycerium (Polypodiaceae, Polypodiidae)
inferredcites →https://doi.org/10.3767/000651909x475941openalex-snapshot
Southeast Asia's changing palaeogeography
inferredcites →https://doi.org/10.3767/blumea.2021.66.03.07openalex-snapshot
Expansion of the fern genus Lecanopteris to encompass some species previously included in Microsorum and Colysis (Polypodiaceae)
inferredcites →https://doi.org/10.48550/arxiv.2008.07054openalex-snapshot
An empirical guide for producing a dated phylogeny with treePL in a maximum likelihood framework
inferredcites →https://doi.org/10.5962/bhl.part.29733openalex-snapshot
The evolutionary ecology of symbiotic ant-plant relationships
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