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An Integrative Framework Reveals Widespread Gene Flow During the Early Diversification of Malvaceae S.L

https://doi.org/10.2139/ssrn.5115625
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inferredcites →https://doi.org/10.1002/ajb2.1064openalex-snapshot
A matter of phylogenetic scale: Distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification histories
inferredcites →https://doi.org/10.1002/ajb2.1695openalex-snapshot
Reconstructing Dipsacales phylogeny using Angiosperms353: issues and insights
inferredcites →https://doi.org/10.1002/ajb2.1699openalex-snapshot
A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set
inferredcites →https://doi.org/10.1002/cpbi.102openalex-snapshot
Using SPAdes De Novo Assembler
inferredcites →https://doi.org/10.1002/tax.574010openalex-snapshot
A molecular phylogeny of the Solanaceae
inferredcites →https://doi.org/10.1007/978-1-62703-767-9_17openalex-snapshot
On the Relevance of Molecular Tools for Taxonomic Revision in Malvales, Malvaceae s.l., and Dombeyoideae
inferredcites →https://doi.org/10.1007/s00606-008-0056-5openalex-snapshot
Placing the origin of two species-rich genera in the late cretaceous with later species divergence in the tertiary: a phylogenetic, biogeographic and molecular dating analysis of Piper and Peperomia (Piperaceae)
inferredcites →https://doi.org/10.1007/s10265-009-0246-4openalex-snapshot
Incongruence among mitochondrial, chloroplast and nuclear gene trees in Pinus subgenus Strobus (Pinaceae)
inferredcites →https://doi.org/10.1016/j.ecoinf.2013.11.002openalex-snapshot
Spatial bias in the GBIF database and its effect on modeling species' geographic distributions
inferredcites →https://doi.org/10.1016/j.gene.2020.145103openalex-snapshot
Plastome evolution and phylogenetic relationships among Malvaceae subfamilies
inferredcites →https://doi.org/10.1016/j.ode.2004.08.001openalex-snapshot
Phylogenetic analysis of the Malvadendrina clade (Malvaceae s.l.) based on plastid DNA sequences
inferredcites →https://doi.org/10.1016/j.revpalbo.2019.01.010openalex-snapshot
Going north and south: The biogeographic history of two Malvaceae in the wake of Neogene Andean uplift and connectivity between the Americas
inferredcites →https://doi.org/10.1016/j.tplants.2004.08.008openalex-snapshot
Genome-scale data, angiosperm relationships, and ‘ending incongruence’: a cautionary tale in phylogenetics
inferredcites →https://doi.org/10.1016/j.ympev.2008.10.015openalex-snapshot
Five molecular markers reveal extensive morphological homoplasy and reticulate evolution in the Malva alliance (Malvaceae)
inferredcites →https://doi.org/10.1016/j.ympev.2015.03.008openalex-snapshot
RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography
inferredcites →https://doi.org/10.1038/s41598-024-83292-9openalex-snapshot
Subfamily evolution analysis using nuclear and chloroplast data from the same reads
inferredcites →https://doi.org/10.1071/bt00023openalex-snapshot
The breakup history of Gondwana and its impact on pre-Cenozoic floristic provincialism
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Subgenome-aware analyses reveal the genomic consequences of ancient allopolyploid hybridizations throughout the cotton family
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A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data
inferredcites →https://doi.org/10.1080/10635150490522232openalex-snapshot
Bayesian Estimation of Ancestral Character States on Phylogenies
inferredcites →https://doi.org/10.1080/10635150490522304openalex-snapshot
Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests
inferredcites →https://doi.org/10.1086/424022openalex-snapshot
Tropical Intercontinental Disjunctions: Gondwana Breakup, Immigration from the Boreotropics, and Transoceanic Dispersal
inferredcites →https://doi.org/10.1086/679350openalex-snapshot
Diversification of Dombeyoideae (Malvaceae) in the Mascarenes: Old Taxa on Young Islands?
inferredcites →https://doi.org/10.1093/aob/mcac132openalex-snapshot
Polyploidy: its consequences and enabling role in plant diversification and evolution
inferredcites →https://doi.org/10.1093/aob/mcad047openalex-snapshot
Phylogenomics reveals widespread hybridization and polyploidization in Henckelia (Gesneriaceae)
inferredcites →https://doi.org/10.1093/aob/mcad069openalex-snapshot
Flower morphology as a predictor of pollination mode in a biotic to abiotic pollination continuum
inferredcites →https://doi.org/10.1093/aob/mcx079openalex-snapshot
Polyploidy and interspecific hybridization: partners for adaptation, speciation and evolution in plants
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/gbe/evad101openalex-snapshot
The Evolutionary Constraints on Angiosperm Chloroplast Adaptation
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
inferredcites →https://doi.org/10.1093/molbev/msab199openalex-snapshot
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
inferredcites →https://doi.org/10.1093/molbev/msac261openalex-snapshot
Easy353: A Tool to Get Angiosperms353 Genes for Phylogenomic Research
inferredcites →https://doi.org/10.1093/molbev/msae007openalex-snapshot
Ecological Diversification in an Adaptive Radiation of Plants: The Role of De Novo Mutation and Introgression
inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot
Application of Phylogenetic Networks in Evolutionary Studies
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/nar/gks1116openalex-snapshot
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs
inferredcites →https://doi.org/10.1093/nar/gkx391openalex-snapshot
GeSeq – versatile and accurate annotation of organelle genomes
inferredcites →https://doi.org/10.1093/plcell/koab021openalex-snapshot
Genome-wide signatures of plastid-nuclear coevolution point to repeated perturbations of plastid proteostasis systems across angiosperms
inferredcites →https://doi.org/10.1093/sysbio/syab035openalex-snapshot
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life
inferredcites →https://doi.org/10.1093/sysbio/syr107openalex-snapshot
Best Practices for Justifying Fossil Calibrations
inferredcites →https://doi.org/10.1093/sysbio/syt037openalex-snapshot
Parsimonious Inference of Hybridization in the Presence of Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1093/sysbio/syu056openalex-snapshot
Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades
inferredcites →https://doi.org/10.1093/sysbio/syw030openalex-snapshot
Inconsistency of Species Tree Methods under Gene Flow
inferredcites →https://doi.org/10.1093/sysbio/syy015openalex-snapshot
Inferring Phylogenetic Networks Using PhyloNet
inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
inferredcites →https://doi.org/10.1093/sysbio/syy086openalex-snapshot
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
inferredcites →https://doi.org/10.1093/ve/vey016openalex-snapshot
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
inferredcites →https://doi.org/10.1098/rspb.1994.0006openalex-snapshot
Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters
inferredcites →https://doi.org/10.1101/2024.08.05.606707openalex-snapshot
Evolutionary rates of nuclear and organellar genomes are linked in land plants
inferredcites →https://doi.org/10.1101/gr.2289704openalex-snapshot
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
inferredcites →https://doi.org/10.1109/tac.1974.1100705openalex-snapshot
A new look at the statistical model identification
inferredcites →https://doi.org/10.1111/1755-0998.13096openalex-snapshot
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
inferredcites →https://doi.org/10.1111/ecog.02118openalex-snapshot
Biogeo: an R package for assessing and improving data quality of occurrence record datasets
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/jipb.12746openalex-snapshot
A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?
inferredcites →https://doi.org/10.1111/jipb.13609openalex-snapshot
Nuclear phylogenomics of angiosperms and insights into their relationships and evolution
inferredcites →https://doi.org/10.1111/nph.16290openalex-snapshot
Large‐scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near‐simultaneous evolutionary origin of all six subfamilies
inferredcites →https://doi.org/10.1111/nph.18082openalex-snapshot
Plant migration under long‐lasting hyperaridity – phylogenomics unravels recent biogeographic history in one of the oldest deserts on Earth
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1186/s12870-023-04523-1openalex-snapshot
Adaptive evolution and co-evolution of chloroplast genomes in Pteridaceae species occupying different habitats: overlapping residues are always highly mutated
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1186/s13059-019-1832-yopenalex-snapshot
OrthoFinder: phylogenetic orthology inference for comparative genomics
inferredcites →https://doi.org/10.1186/s13059-020-02154-5openalex-snapshot
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.1371/journal.pcbi.1006650openalex-snapshot
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
inferredcites →https://doi.org/10.1600/036364418x697391openalex-snapshot
Molecular Phylogenetics and Character Evolution of Gaya and Related Genera (Malvoideae, Malvaceae)
inferredcites →https://doi.org/10.21425/f55419694openalex-snapshot
Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing
inferredcites →https://doi.org/10.21425/f5fbg19694openalex-snapshot
Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing
inferredcites →https://doi.org/10.21475/ajcs.21.15.08.p3360openalex-snapshot
Taxonomic significances of seed morphology in some tribes of subfamily Malvoideae (Malvaceae) in Saudi Arabia
inferredcites →https://doi.org/10.21608/taec.2016.11956openalex-snapshot
Phenetic relationship between Malvaceae s.s. and its related families
inferredcites →https://doi.org/10.2307/1224719openalex-snapshot
Biogeography of Nothofagus supports the sequence of Gondwana break‐up
inferredcites →https://doi.org/10.3389/fgene.2021.801229openalex-snapshot
Chloroplast and Nuclear Genetic Diversity Explain the Limited Distribution of Endangered and Endemic Thuja sutchuenensis in China
inferredcites →https://doi.org/10.3389/fpls.2022.850521openalex-snapshot
Localized Phylogenetic Discordance Among Nuclear Loci Due to Incomplete Lineage Sorting and Introgression in the Family of Cotton and Cacao (Malvaceae)
inferredcites →https://doi.org/10.3389/fpls.2023.1237749openalex-snapshot
Rampant chloroplast capture in Sarracenia revealed by plastome phylogeny
inferredcites →https://doi.org/10.3732/ajb.1000539openalex-snapshot
Paleocene Malvaceae from northern South America and their biogeographical implications
inferredcites →https://doi.org/10.3732/ajb.1500537openalex-snapshot
Dispersal largely explains the Gondwanan distribution of the ancient tropical clusioid plant clade
inferredcites →https://doi.org/10.3732/ajb.91.11.1863openalex-snapshot
Phylogenetic relationships of Malvatheca (Bombacoideae and Malvoideae; Malvaceae sensu lato) as inferred from plastid DNA sequences
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