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Phylogenomics reveals widespread hybridization and polyploidization in Henckelia (Gesneriaceae)
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ajb2.1018openalex-snapshot
New prospects in the detection and comparative analysis of hybridization in the tree of life
inferredcites →https://doi.org/10.1002/ajb2.1058openalex-snapshot
Phylogenomic analyses reveal extensive gene flow within the magic flowers (Achimenes)
inferredcites →https://doi.org/10.1002/ajb2.1324openalex-snapshot
Reproductive isolation among three sympatric Achimenes species: pre‐ and post‐pollination components
inferredcites →https://doi.org/10.1002/tax.603012openalex-snapshot
Molecular systematics and remodelling of Chirita and associated genera (Gesneriaceae)
inferredcites →https://doi.org/10.1007/bf00984748openalex-snapshot
Interspecific hybridization in natural populations ofCyrtandra (Gesneriaceae) on the Hawaiian Islands: Evidence from RAPD markers
inferredcites →https://doi.org/10.1007/s00035-016-0164-8openalex-snapshot
Allopatric hybrids as evidence for past range dynamics in Sempervivum (Crassulaceae), a western Eurasian high mountain oreophyte
inferredcites →https://doi.org/10.1016/j.ppees.2010.02.002openalex-snapshot
Patterns of hybridization in plants
inferredcites →https://doi.org/10.1016/j.scienta.2012.10.006openalex-snapshot
Interspecific crosses within the Streptocarpus subgenus Streptocarpella and intergeneric crosses between Streptocarpella and Saintpaulia ionantha genotypes
inferredcites →https://doi.org/10.1016/j.tig.2006.02.003openalex-snapshot
Phylogenomics: the beginning of incongruence?
inferredcites →https://doi.org/10.1016/j.tree.2004.01.003openalex-snapshot
Hybridization and adaptive radiation
inferredcites →https://doi.org/10.1016/j.tree.2005.02.010openalex-snapshot
Hybridization as an invasion of the genome
inferredcites →https://doi.org/10.1016/j.tree.2007.09.008openalex-snapshot
Adaptation from standing genetic variation
inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot
Gene tree discordance, phylogenetic inference and the multispecies coalescent
inferredcites →https://doi.org/10.1016/j.tree.2019.02.008openalex-snapshot
A Combinatorial View on Speciation and Adaptive Radiation
inferredcites →https://doi.org/10.1016/j.ympev.2013.05.003openalex-snapshot
Gene discordance in phylogenomics of recent plant radiations, an example from Hawaiian Cyrtandra (Gesneriaceae)
inferredcites →https://doi.org/10.1016/j.ympev.2016.10.001openalex-snapshot
Resolving incongruence: Species of hybrid origin in Columnea (Gesneriaceae)
inferredcites →https://doi.org/10.1016/j.ympev.2018.10.033openalex-snapshot
Multi-allele species reconstruction using ASTRAL
inferredcites →https://doi.org/10.1016/s0169-5347(01)02187-5openalex-snapshot
Chromosomal rearrangements and speciation
inferredcites →https://doi.org/10.1017/s0960428603000337openalex-snapshot
A SYNOPSIS OF CYTOLOGICAL STUDIES IN GESNERIACEAE
inferredcites →https://doi.org/10.1017/s0960428612000169openalex-snapshot
NEW CHROMOSOME COUNTS IN OLD WORLD GESNERIACEAE: NUMBERS FOR SPECIES HITHERTO REGARDED AS CHIRITA, AND THEIR SYSTEMATIC AND EVOLUTIONARY SIGNIFICANCE
inferredcites →https://doi.org/10.1017/s0960428613000127openalex-snapshot
THE CURRENT STATUS OF THE SPECIES HITHERTO ASSIGNED TO HENCKELIA (GESNERIACEAE)
inferredcites →https://doi.org/10.1038/nature14181openalex-snapshot
Evolution of Darwin’s finches and their beaks revealed by genome sequencing
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/s41467-018-05479-9openalex-snapshot
Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes
inferredcites →https://doi.org/10.1038/s41559-018-0717-xopenalex-snapshot
Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow
inferredcites →https://doi.org/10.1038/s41559-018-0777-yopenalex-snapshot
Insights from genomes into the evolutionary importance and prevalence of hybridization in nature
inferredcites →https://doi.org/10.1038/srep36283openalex-snapshot
Past climate changes facilitated homoploid speciation in three mountain spiny fescues (Festuca, Poaceae)
inferredcites →https://doi.org/10.1046/j.1365-2540.2000.00680.xopenalex-snapshot
The likelihood of homoploid hybrid speciation
inferredcites →https://doi.org/10.1093/bioinformatics/btaa868openalex-snapshot
MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btq228openalex-snapshot
DendroPy: a Python library for phylogenetic computing
inferredcites →https://doi.org/10.1093/bioinformatics/btq243openalex-snapshot
The Newick utilities: high-throughput phylogenetic tree processing in the U nix shell
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/genetics/iyab173openalex-snapshot
Phylogenomic approaches to detecting and characterizing introgression
inferredcites →https://doi.org/10.1093/molbev/msaa106openalex-snapshot
New Methods to Calculate Concordance Factors for Phylogenomic Datasets
inferredcites →https://doi.org/10.1093/molbev/msac083openalex-snapshot
Estimation of Cross-Species Introgression Rates Using Genomic Data Despite Model Unidentifiability
inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot
Testing for Ancient Admixture between Closely Related Populations
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/nar/gkx391openalex-snapshot
GeSeq – versatile and accurate annotation of organelle genomes
inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a107326openalex-snapshot
INTERSPECIFIC HYBRIDIZATION IN AFRICAN VIOLETS
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026200openalex-snapshot
Interspecific hybrid ancestry of a plant adaptive radiation: allopolyploidy of the Hawaiian silversword alliance (Asteraceae) inferred from floral homeotic gene duplications
inferredcites →https://doi.org/10.1093/sysbio/syaa066openalex-snapshot
Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l
inferredcites →https://doi.org/10.1093/sysbio/syaa083openalex-snapshot
The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales
inferredcites →https://doi.org/10.1093/sysbio/syab008openalex-snapshot
Gene Tree Discord, Simplex Plots, and Statistical Tests under the Coalescent
inferredcites →https://doi.org/10.1093/sysbio/syab044openalex-snapshot
A New Pipeline for Removing Paralogs in Target Enrichment Data
inferredcites →https://doi.org/10.1093/sysbio/syac011openalex-snapshot
Ghost Lineages Highly Influence the Interpretation of Introgression Tests
inferredcites →https://doi.org/10.1093/sysbio/syu071openalex-snapshot
From Gene Trees to a Dated Allopolyploid Network: Insights from the Angiosperm Genus Viola (Violaceae)
inferredcites →https://doi.org/10.1093/sysbio/syw012openalex-snapshot
Distinct Processes Drive Diversification in Different Clades of Gesneriaceae
inferredcites →https://doi.org/10.1093/sysbio/syw083openalex-snapshot
Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms
inferredcites →https://doi.org/10.1093/sysbio/syw105openalex-snapshot
Phylogenomics from Whole Genome Sequences Using aTRAM
inferredcites →https://doi.org/10.1093/sysbio/syy015openalex-snapshot
Inferring Phylogenetic Networks Using PhyloNet
inferredcites →https://doi.org/10.1093/sysbio/syz056openalex-snapshot
Phylogenetic Trees and Networks Can Serve as Powerful and Complementary Approaches for Analysis of Genomic Data
inferredcites →https://doi.org/10.1093/sysbio/syz078openalex-snapshot
Phylogenetic Conflicts, Combinability, and Deep Phylogenomics in Plants
inferredcites →https://doi.org/10.1099/mgen.0.000056openalex-snapshot
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
inferredcites →https://doi.org/10.1101/gr.089532.108openalex-snapshot
ABySS: A parallel assembler for short read sequence data
inferredcites →https://doi.org/10.1101/gr.159426.113openalex-snapshot
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
inferredcites →https://doi.org/10.1104/pp.16.01340openalex-snapshot
Hybridization in Plants: Old Ideas, New Techniques
inferredcites →https://doi.org/10.1111/1755-0998.13265openalex-snapshot
Dsuite ‐ Fast D ‐statistics and related admixture evidence from VCF files
inferredcites →https://doi.org/10.1111/2041-210x.12846openalex-snapshot
Detecting hybridization by likelihood calculation of gene tree extra lineages given explicit models
inferredcites →https://doi.org/10.1111/2041-210x.13145openalex-snapshot
Phylogenomics from low‐coverage whole‐genome sequencing
inferredcites →https://doi.org/10.1111/2041-210x.13696openalex-snapshot
TAPER: Pinpointing errors in multiple sequence alignments despite varying rates of evolution
inferredcites →https://doi.org/10.1111/eva.12214openalex-snapshot
Hybridization facilitates evolutionary rescue
inferredcites →https://doi.org/10.1111/evo.12399openalex-snapshot
HOW COMMON IS HOMOPLOID HYBRID SPECIATION?
inferredcites →https://doi.org/10.1111/j.1095-8339.1976.tb01359.xopenalex-snapshot
Hybridization studies in Columnea L. (Gesneriaceae). 1. Jamaican species
inferredcites →https://doi.org/10.1111/j.1420-9101.2012.02599.xopenalex-snapshot
Hybridization and speciation
inferredcites →https://doi.org/10.1111/j.1759-6831.2011.00151.xopenalex-snapshot
Confirmation of a natural hybrid species inPetrocosmea(Gesneriaceae) based on molecular and morphological evidence
inferredcites →https://doi.org/10.1111/jeb.12026openalex-snapshot
Conditions when hybridization might predispose populations for adaptive radiation
inferredcites →https://doi.org/10.1111/jse.12519openalex-snapshot
Diversification of Hawaiian Cyrtandra (Gesneriaceae) under the influence of incomplete lineage sorting and hybridization
inferredcites →https://doi.org/10.1111/jse.12806openalex-snapshot
Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae
inferredcites →https://doi.org/10.1111/mec.16226openalex-snapshot
Gene flow, linked selection, and divergent sorting of ancient polymorphism shape genomic divergence landscape in a group of edaphic specialists
inferredcites →https://doi.org/10.1111/njb.01992openalex-snapshot
Rachunia cymbiformis , a new genus and species of Gesneriaceae from Thailand
inferredcites →https://doi.org/10.1111/nph.12133openalex-snapshot
An approach to identify putative hybrids in the ‘coalescent stochasticity zone’, as exemplified in the A frican plant genus S treptocarpus ( G esneriaceae)
inferredcites →https://doi.org/10.1111/nph.16588openalex-snapshot
The genome of a cave plant, Primulina huaijiensis , provides insights into adaptation to limestone karst habitats
inferredcites →https://doi.org/10.1126/science.aaw2090openalex-snapshot
Genomic architecture and introgression shape a butterfly radiation
inferredcites →https://doi.org/10.1146/annurev.arplant.043008.092039openalex-snapshot
The Role of Hybridization in Plant Speciation
inferredcites →https://doi.org/10.11646/phytotaxa.38.1.1openalex-snapshot
Oreocharis × heterandra (Gesneriaceae): a natural hybrid from the Shengtangshan Mountains, Guangxi, China
inferredcites →https://doi.org/10.11646/phytotaxa.497.2.2openalex-snapshot
A natural intergeneric hybrid of Gesneriaceae from Brazil
inferredcites →https://doi.org/10.1177/1176934318774546openalex-snapshot
aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data
inferredcites →https://doi.org/10.1186/1471-2164-16-s10-s10openalex-snapshot
A maximum pseudo-likelihood approach for phylogenetic networks
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1186/s12862-020-01617-4openalex-snapshot
The genetic basis of hybrid male sterility in sympatric Primulina species
inferredcites →https://doi.org/10.1186/s13059-015-0721-2openalex-snapshot
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
inferredcites →https://doi.org/10.1186/s13059-020-02154-5openalex-snapshot
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
inferredcites →https://doi.org/10.1371/journal.pcbi.1004135openalex-snapshot
Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable
inferredcites →https://doi.org/10.1600/036364422x16512572275016openalex-snapshot
Reassessment of Chirita umbrophila (Gesneriaceae) Based on Molecular and Morphological Evidence
inferredcites →https://doi.org/10.17520/biods.2017029openalex-snapshot
Post-pollination reproductive isolation of sympatric populations of Primulina eburnea and P. mabaensis (Gesneriaceae)
inferredcites →https://doi.org/10.22244/rheedea.2020.30.01.03openalex-snapshot
A taxonomic revision of Henckelia (Gesneriaceae) in South India with a new species, one new combination and seven lectotypifications
inferredcites →https://doi.org/10.3897/phytokeys.157.32609openalex-snapshot
Two new combinations in Oreocharis (Gesneriaceae) based on morphological, molecular and cytological evidence
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/phytokeys.274.185059zenodo-depositor-declared
Hemiboea siccinvolucris (Gesneriaceae), a new species from northeastern Guangxi, China
inferred← citeshttps://doi.org/10.1002/ajb2.70216openalex-snapshot
Integrative utilization of genomic resources for improved phylogenetic resolution in Sonerileae (Melastomataceae)
inferred← citeshttps://doi.org/10.1002/tax.13382openalex-snapshot
Unraveling the taxonomy of Asian Buddleja: Species discovery and delimitation through morphological comparison, ploidy analysis and phylogenomic insights
inferred← citeshttps://doi.org/10.1002/tax.70159openalex-snapshot
Integrative evidence reveals a new species and traces of hybridization in Fritillaria (Liliaceae) from the Qinghai‐Tibet Plateau
inferred← citeshttps://doi.org/10.1007/s11538-025-01545-8openalex-snapshot
Beyond Level-1: Identifiability of a Class of Galled Tree-Child Networks
inferred← citeshttps://doi.org/10.1016/j.indcrop.2024.118928openalex-snapshot
Impact of polyploidization on genome evolution and phenotypic diversity in oil-tea Camellia
inferred← citeshttps://doi.org/10.1016/j.pld.2025.04.006openalex-snapshot
Evaluating the utility of deep genome skimming for phylogenomic analyses: A case study in the species-rich genus Rhododendron
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108093openalex-snapshot
Phylogenomics of mulberries (Morus, Moraceae) inferred from plastomes and single copy nuclear genes
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108361openalex-snapshot
Phylogenomics provides new insight into the phylogeny and diversification of Asian Lappula (Boraginaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108444openalex-snapshot
Phylogenomic incongruence in Castanopsis (Fagaceae) is primarily caused by gene flow rather than incomplete lineage sorting
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108648openalex-snapshot
Deciphering reticulation and reproductive trait evolution in a chasmophyte lineage: a phylogenomic approach to the evolutionary patterns within Petrocoptis
inferred← citeshttps://doi.org/10.1080/23802359.2024.2338550openalex-snapshot
Assembly and analysis of the chloroplast genome of Amorphophallus kachinensis Engler & Gehrmann (Araceae) from Southwestern China: implications for conservation and utilization
inferred← citeshttps://doi.org/10.1093/botlinnean/boad071openalex-snapshot
Synopsis of Osmunda (royal ferns; Osmundaceae): towards reconciliation of genetic and biogeographic patterns with morphologic variation
inferred← citeshttps://doi.org/10.1093/molbev/msag053openalex-snapshot
OrthoGarden: a pipeline for propagating phylogenetic trees for nonmodel organisms from short reads and de novo genome assemblies
inferred← citeshttps://doi.org/10.1111/cla.70010openalex-snapshot
Phylogenomic reconstruction reveals deep reticulate evolutionary history and polyphyletic genus ( Boeica ) in the subtribe Leptoboeinae (Gesneriaceae), with description of a novel genus
inferred← citeshttps://doi.org/10.1111/jse.13149openalex-snapshot
Integrated analyses reveal extensive cytonuclear discordance and two new members of Rhodiola
inferred← citeshttps://doi.org/10.1186/s12870-025-06586-8openalex-snapshot
Plastome phylogenomics unravels the evolutionary relationships and biogeographic history of Chloranthaceae
inferred← citeshttps://doi.org/10.1186/s12870-025-06612-9openalex-snapshot
Genomic DNA barcodes provide novel insights into species delimitation in the complex Camellia sect. Thea (Theaceae)
inferred← citeshttps://doi.org/10.1186/s12870-026-09891-yopenalex-snapshot
Comparative and phylogenomic analyses of 19 Petrocodon (Gesneriaceae) species from the Guizhou karst plateau, China, featuring 13 newly assembled chloroplast genomes
inferred← citeshttps://doi.org/10.2139/ssrn.5115625openalex-snapshot
An Integrative Framework Reveals Widespread Gene Flow During the Early Diversification of Malvaceae S.L
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Morphological and Cyto-Nuclear Conflicting Signals Across Non-Sister Lineages in Darkling Beetles (Tenebrionidae: Akis)
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Comparative Analysis of Chloroplast Genome Between Widely Distributed and Locally Distributed Lysionotus (Gesneriaceae) Related Members
inferred← citeshttps://doi.org/10.48130/tp-0026-0001openalex-snapshot
Phylogenetic framework and evolution of Malvaceae s.l.
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The geographic structure of chloroplast capture in a hybrid zone
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