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Aphanizomenon flos-aquae and 161 closely related Nostocales genomes: insights for biotechnology

https://doi.org/10.2139/ssrn.5536719
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Risk Assessment of Microcystin in Dietary Aphanizomenon flos-aquae
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DNA transfer into cyanobacteria
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Genetic tools for cyanobacteria
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[83] Conjugal transfer of DNA to cyanobacteria
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Microcystin biosynthesis and toxic effects
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Cyanobacteria as a source of biofertilizers for sustainable agriculture
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Using a Riboswitch Sensor to Examine Coenzyme B12 Metabolism and Transport in E. coli
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Cyanobacteria and Eukaryotic Algae Use Different Chemical Variants of Vitamin B12
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Natural competence for transformation
inferredcites →https://doi.org/10.1016/j.hal.2015.09.007openalex-snapshot
A review of the phylogeny, ecology and toxin production of bloom-forming Aphanizomenon spp. and related species within the Nostocales (cyanobacteria)
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Iningainema pulvinus gen nov., sp nov. (Cyanobacteria, Scytonemataceae) a new nodularin producer from Edgbaston Reserve, north-eastern Australia
inferredcites →https://doi.org/10.1016/j.hal.2018.05.009openalex-snapshot
A closely-related clade of globally distributed bloom-forming cyanobacteria within the Nostocales
inferredcites →https://doi.org/10.1016/j.hal.2021.102005openalex-snapshot
Complete genomes derived by directly sequencing freshwater bloom populations emphasize the significance of the genus level ADA clade within the Nostocales
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Determination of microcystins and nodularin (cyanobacterial toxins) in water by LC–MS/MS. Monitoring of Lake Marathonas, a water reservoir of Athens, Greece
inferredcites →https://doi.org/10.1016/j.lfs.2004.06.004openalex-snapshot
Antioxidant properties of a novel phycocyanin extract from the blue-green alga Aphanizomenon flos-aquae
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Global scanning of cylindrospermopsin: Critical review and analysis of aquatic occurrence, bioaccumulation, toxicity and health hazards
inferredcites →https://doi.org/10.1016/j.toxicon.2005.06.021openalex-snapshot
Detection of microcystin synthetase genes in health food supplements containing the freshwater cyanobacterium Aphanizomenon flos-aquae
inferredcites →https://doi.org/10.1016/s1074-5521(00)00021-1openalex-snapshot
Structural organization of microcystin biosynthesis in Microcystis aeruginosa PCC7806: an integrated peptide–polyketide synthetase system
inferredcites →https://doi.org/10.1021/acs.jafc.0c02024openalex-snapshot
Microcystin Toxins at Potentially Hazardous Levels in Algal Dietary Supplements Revealed by a Combination of Bioassay, Immunoassay, and Mass Spectrometric Methods
inferredcites →https://doi.org/10.1021/ja9024353openalex-snapshot
Evidence that Biosynthesis of the Neurotoxic Alkaloids Anatoxin-a and Homoanatoxin-a in the Cyanobacterium Oscillatoria PCC 6506 Occurs on a Modular Polyketide Synthase Initiated by l -Proline
inferredcites →https://doi.org/10.1021/jf062300ropenalex-snapshot
Purification and Characterization of a Corrinoid-Compound in an Edible Cyanobacterium Aphanizomenon flos-aquae as a Nutritional Supplementary Food
inferredcites →https://doi.org/10.1023/a:1004166029866openalex-snapshot
Taxonomic re-evaluation of Aphanizomenon flos-aquae NH-5 based on morphology and 16S rRNA gene sequences
inferredcites →https://doi.org/10.1023/a:1026506713560openalex-snapshot
Harvesting of Aphanizomenon flos-aquae Ralfs ex Born. & Flah. var. flos-aquae (Cyanobacteria) from Klamath Lake for human dietary use
inferredcites →https://doi.org/10.1024/0300-9831.79.2.117openalex-snapshot
Effect of a Klamath algae product (“AFA-B12”) on blood levels of vitamin B12 and homocysteine in vegan subjects: a pilot study
inferredcites →https://doi.org/10.1038/nature04056openalex-snapshot
Algae acquire vitamin B12 through a symbiotic relationship with bacteria
inferredcites →https://doi.org/10.1038/ncomms3304openalex-snapshot
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.3103openalex-snapshot
Binning metagenomic contigs by coverage and composition
inferredcites →https://doi.org/10.1038/nsmb.1770openalex-snapshot
A distinct mechanism for the ABC transporter BtuCD–BtuF revealed by the dynamics of complex formation
inferredcites →https://doi.org/10.1038/s41467-017-01815-7openalex-snapshot
Single-molecule visualization of conformational changes and substrate transport in the vitamin B12 ABC importer BtuCD-F
inferredcites →https://doi.org/10.1038/s41587-022-01249-7openalex-snapshot
Development of spirulina for the manufacture and oral delivery of protein therapeutics
inferredcites →https://doi.org/10.1038/s41592-019-0686-2openalex-snapshot
SciPy 1.0: fundamental algorithms for scientific computing in Python
inferredcites →https://doi.org/10.1038/s41592-020-00971-xopenalex-snapshot
metaFlye: scalable long-read metagenome assembly using repeat graphs
inferredcites →https://doi.org/10.1073/pnas.81.5.1561openalex-snapshot
Construction of shuttle vectors capable of conjugative transfer from Escherichia coli to nitrogen-fixing filamentous cyanobacteria.
inferredcites →https://doi.org/10.1080/00071618100650461openalex-snapshot
The influence of carbon dioxide-depletion on growth and sinking rate of two planktonic diatoms in culture
inferredcites →https://doi.org/10.1080/10937400590889412openalex-snapshot
Hepatotoxic Cyanobacteria: A Review of the Biological Importance of Microcystins in Freshwater Environments
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btr703openalex-snapshot
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btv638openalex-snapshot
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
inferredcites →https://doi.org/10.1093/molbev/msab293openalex-snapshot
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gkad344openalex-snapshot
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
inferredcites →https://doi.org/10.1093/nar/gkad452openalex-snapshot
Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria
inferredcites →https://doi.org/10.1093/nar/gkw1092openalex-snapshot
KEGG: new perspectives on genomes, pathways, diseases and drugs
inferredcites →https://doi.org/10.1099/ijs.0.63276-0openalex-snapshot
Phylogenetic and morphological evaluation of the genera Anabaena, Aphanizomenon, Trichormus and Nostoc (Nostocales, Cyanobacteria)
inferredcites →https://doi.org/10.1099/mic.0.036988-0openalex-snapshot
The cylindrospermopsin gene cluster of Aphanizomenon sp. strain 10E6: organization and recombination
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1111/1462-2920.16035openalex-snapshot
Exploring the onset of B 12 ‐based mutualisms using a recently evolved Chlamydomonas auxotroph and B 12 ‐producing bacteria
inferredcites →https://doi.org/10.1111/j.1365-2958.2009.06816.xopenalex-snapshot
The non‐ribosomal assembly and frequent occurrence of the protease inhibitors spumigins in the bloom‐forming cyanobacterium Nodularia spumigena
inferredcites →https://doi.org/10.1111/j.1462-2920.2012.02729.xopenalex-snapshot
Environmental conditions that influence toxin biosynthesis in cyanobacteria
inferredcites →https://doi.org/10.1128/aem.01714-10openalex-snapshot
Improved Eco-Friendly Recombinant Anabaena sp. Strain PCC7120 with Enhanced Nitrogen Biofertilizer Potential
inferredcites →https://doi.org/10.1128/aem.68.11.5296-5303.2002openalex-snapshot
Diversity of Aphanizomenon flos-aquae (Cyanobacterium) Populations along a Baltic Sea Salinity Gradient
inferredcites →https://doi.org/10.1128/aem.70.11.6353-6362.2004openalex-snapshot
Characterization of the Nodularin Synthetase Gene Cluster and Proposed Theory of the Evolution of Cyanobacterial Hepatotoxins
inferredcites →https://doi.org/10.1128/jb.00475-16openalex-snapshot
Complementation of Cobalamin Auxotrophy in Synechococcus sp. Strain PCC 7002 and Validation of a Putative Cobalamin Riboswitch In Vivo
inferredcites →https://doi.org/10.1128/jb.00476-16openalex-snapshot
Identification and Regulation of Genes for Cobalamin Transport in the Cyanobacterium Synechococcus sp. Strain PCC 7002
inferredcites →https://doi.org/10.1128/jb.01293-13openalex-snapshot
Natural Competence and the Evolution of DNA Uptake Specificity
inferredcites →https://doi.org/10.1128/jb.01892-07openalex-snapshot
Pseudo-B 12 Joins the Cofactor Family
inferredcites →https://doi.org/10.1128/jb.184.3.706-717.2002openalex-snapshot
Identification of the Periplasmic Cobalamin-Binding Protein BtuF ofEscherichia coli
inferredcites →https://doi.org/10.1128/msphere.00997-21openalex-snapshot
Natural Competence in the Filamentous, Heterocystous Cyanobacterium Chlorogloeopsis fritschii PCC 6912
inferredcites →https://doi.org/10.1159/000517443openalex-snapshot
The Formation of Spore-Like Akinetes: A Survival Strategy of Filamentous Cyanobacteria
inferredcites →https://doi.org/10.1177/1535370217746612openalex-snapshot
Vitamin B 12 sources and microbial interaction
inferredcites →https://doi.org/10.1186/1471-2164-13-613openalex-snapshot
Genome-derived insights into the biology of the hepatotoxic bloom-forming cyanobacterium Anabaena sp. strain 90
inferredcites →https://doi.org/10.1371/journal.pone.0038757openalex-snapshot
Cyanobacteria and Cyanotoxins: The Influence of Nitrogen versus Phosphorus
inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
inferredcites →https://doi.org/10.3390/ijms22094522openalex-snapshot
Microbial and Genetic Resources for Cobalamin (Vitamin B12) Biosynthesis: From Ecosystems to Industrial Biotechnology
inferredcites →https://doi.org/10.3390/life10110249openalex-snapshot
Function and Benefits of Natural Competence in Cyanobacteria: From Ecology to Targeted Manipulation
inferredcites →https://doi.org/10.3390/life6040042openalex-snapshot
Cyanobacteria as Chassis for Industrial Biotechnology: Progress and Prospects
inferredcites →https://doi.org/10.3390/md11040991openalex-snapshot
An Overview on the Marine Neurotoxin, Saxitoxin: Genetics, Molecular Targets, Methods of Detection and Ecological Functions
inferredcites →https://doi.org/10.3390/md8051650openalex-snapshot
On the Chemistry, Toxicology and Genetics of the Cyanobacterial Toxins, Microcystin, Nodularin, Saxitoxin and Cylindrospermopsin
inferredcites →https://doi.org/10.3390/md8072185openalex-snapshot
Neurotoxic Alkaloids: Saxitoxin and Its Analogs
inferredcites →https://doi.org/10.4067/s0716-97602013000400009openalex-snapshot
Cyanobacterial defense mechanisms against foreign DNA transfer and their impact on genetic engineering
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