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Phylogenomic assessment of microhylid frogs reveals widespread taxonomic confusion in the Asterophryinae and establishes the timing of diversification in Australia

https://doi.org/10.2139/ssrn.5954957
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Using SPAdes De Novo Assembler
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A Predictive Approach to Infer the Activity and Natural Variation of Retrotransposon Families in Plants
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Cenozoic climatic change and the development of the arid vegetation in Australia
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Post-glacial sea-level changes around the Australian margin: a review
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Nuclear gene phylogeny of narrow-mouthed toads (Family: Microhylidae) and a discussion of competing hypotheses concerning their biogeographical origins
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The radiation of microhylid frogs (Amphibia: Anura) on New Guinea: A mitochondrial phylogeny reveals parallel evolution of morphological and life history traits and disproves the current morphology-based classification
inferredcites →https://doi.org/10.1016/j.ympev.2017.04.008openalex-snapshot
Molecular phylogenetics and dating of the problematic New Guinea microhylid frogs (Amphibia: Anura) reveals elevated speciation rates and need for taxonomic reclassification
inferredcites →https://doi.org/10.1016/j.ympev.2018.03.036openalex-snapshot
A large-scale phylogeny of Microhylidae inferred from a combined dataset of 121 genes and 427 taxa
inferredcites →https://doi.org/10.1016/j.ympev.2020.106771openalex-snapshot
Analysis of ultraconserved elements supports African origins of narrow-mouthed frogs
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1071/zo03056openalex-snapshot
Australian microhylid frogs ( Cophixalus and Austrochaperina ): phylogeny, taxonomy, calls, distributions and breeding biology
inferredcites →https://doi.org/10.1080/10635150701420643openalex-snapshot
Inferring Speciation Times under an Episodic Molecular Clock
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
inferredcites →https://doi.org/10.1093/molbev/msr045openalex-snapshot
Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/mst024openalex-snapshot
Ultrafast Approximation for Phylogenetic Bootstrap
inferredcites →https://doi.org/10.1093/molbev/msu176openalex-snapshot
Molecular Phylogeny, Biogeography, and Habitat Preference Evolution of Marsupials
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msy159openalex-snapshot
MACSE v2: Toolkit for the Alignment of Coding Sequences Accounting for Frameshifts and Stop Codons
inferredcites →https://doi.org/10.1093/sysbio/syaa034openalex-snapshot
Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life
inferredcites →https://doi.org/10.1093/sysbio/sys049openalex-snapshot
Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
inferredcites →https://doi.org/10.1093/sysbio/syw001openalex-snapshot
Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae).
inferredcites →https://doi.org/10.1093/sysbio/syy001openalex-snapshot
Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case
inferredcites →https://doi.org/10.1093/zoolinnean/zlad168openalex-snapshot
Species delimitation and phylogenetic analyses of a New Guinean frog genus (Microhylidae: Hylophorbus) reveal many undescribed species and a complex diversification history driven by late Miocene events
inferredcites →https://doi.org/10.1111/cla.12118openalex-snapshot
The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow‐mouthed frogs (Anura, Microhylidae)
inferredcites →https://doi.org/10.1111/j.1365-2699.2008.01993.xopenalex-snapshot
New approaches to understanding late Quaternary climate fluctuations and refugial dynamics in Australian wet tropical rain forests
inferredcites →https://doi.org/10.1126/sciadv.aaz1346openalex-snapshot
Cenozoic sea-level and cryospheric evolution from deep-sea geochemical and continental margin records
inferredcites →https://doi.org/10.1144/gsl.sp.1997.126.01.03openalex-snapshot
Cenozoic plate tectonic reconstructions of SE Asia
inferredcites →https://doi.org/10.11646/megataxa.5.1.1openalex-snapshot
New concepts and methods for phylogenetic taxonomy and nomenclature in zoology, exemplified by a new ranked cladonomy of recent amphibians (Lissamphibia)
inferredcites →https://doi.org/10.1371/journal.pbio.3001007openalex-snapshot
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
inferredcites →https://doi.org/10.21425/fob.18.137988openalex-snapshot
Molecular and acoustic evidence for large-scale underestimation of frog species diversity on New Guinea
inferredcites →https://doi.org/10.3897/zse.99.97006openalex-snapshot
Another giant species of the microhylid frog genus Cophixalus Boettger, 1892 from the mountains of Papua New Guinea and first records of procoracoids in the genus
inferredcites →https://doi.org/10.7717/peerj.4422openalex-snapshot
A striking new genus and species of cave-dwelling frog (Amphibia: Anura: Microhylidae: Asterophryinae) from Thailand
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