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Guidance framework to apply good practices in ecological data analysis: Lessons learned from building Galaxy-Ecology
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/eap.1822openalex-snapshot
Open science, reproducibility, and transparency in ecology
inferredcites →https://doi.org/10.1002/ece3.7853openalex-snapshot
The early bird gets the return: The benefits of publishing your data sooner
inferredcites →https://doi.org/10.1002/ece3.9961openalex-snapshot
Reproducibility in ecology and evolution: Minimum standards for data and code
inferredcites →https://doi.org/10.1002/ecs2.1394openalex-snapshot
The mismatch between current statistical practice and doctoral training in ecology
inferredcites →https://doi.org/10.1002/ecs2.2567openalex-snapshot
Evaluating the popularity of R in ecology
inferredcites →https://doi.org/10.1002/jwmg.21855openalex-snapshot
Computational Reproducibility in The Wildlife Society's Flagship Journals
inferredcites →https://doi.org/10.1007/978-3-540-78246-9_38openalex-snapshot
KNIME: The Konstanz Information Miner
inferredcites →https://doi.org/10.1016/j.cels.2018.03.014openalex-snapshot
Practical Computational Reproducibility in the Life Sciences
inferredcites →https://doi.org/10.1016/j.cels.2018.05.012openalex-snapshot
Community-Driven Data Analysis Training for Biology
inferredcites →https://doi.org/10.1016/j.future.2017.01.012openalex-snapshot
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities
inferredcites →https://doi.org/10.1016/j.procs.2011.04.074openalex-snapshot
Toward Executable Scientific Publications
inferredcites →https://doi.org/10.1016/j.tree.2011.11.016openalex-snapshot
Ecoinformatics: supporting ecology as a data-intensive science
inferredcites →https://doi.org/10.1038/nbt.3820openalex-snapshot
Nextflow enables reproducible computational workflows
inferredcites →https://doi.org/10.1038/s41562-016-0021openalex-snapshot
A manifesto for reproducible science
inferredcites →https://doi.org/10.1038/s41597-020-0486-7openalex-snapshot
The TRUST Principles for digital repositories
inferredcites →https://doi.org/10.1038/sdata.2016.18openalex-snapshot
The FAIR Guiding Principles for scientific data management and stewardship
inferredcites →https://doi.org/10.1073/pnas.1708272114openalex-snapshot
Is science really facing a reproducibility crisis, and do we need it to?
inferredcites →https://doi.org/10.1093/bioinformatics/bts480openalex-snapshot
Snakemake—a scalable bioinformatics workflow engine
inferredcites →https://doi.org/10.1093/biosci/biab107openalex-snapshot
Data Science in Undergraduate Life Science Education: A Need for Instructor Skills Training
inferredcites →https://doi.org/10.1093/biosci/bix025openalex-snapshot
Skills and Knowledge for Data-Intensive Environmental Research
inferredcites →https://doi.org/10.1093/biosci/biy068openalex-snapshot
Situating Ecology as a Big-Data Science: Current Advances, Challenges, and Solutions
inferredcites →https://doi.org/10.1093/nar/gkac247openalex-snapshot
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
inferredcites →https://doi.org/10.1093/scipol/scs019openalex-snapshot
Orienting international science cooperation to meet global 'grand challenges'
inferredcites →https://doi.org/10.1098/rsos.210450openalex-snapshot
Estimating the reproducibility of social learning research published between 1955 and 2018
inferredcites →https://doi.org/10.1098/rspb.2022.1113openalex-snapshot
Why don't we share data and code? Perceived barriers and benefits to public archiving practices
inferredcites →https://doi.org/10.1101/2020.05.14.095901openalex-snapshot
Advanced Research Infrastructure for Experimentation in genomicS (ARIES): a lustrum of Galaxy experience
inferredcites →https://doi.org/10.1101/gr.276963.122openalex-snapshot
The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond
inferredcites →https://doi.org/10.1111/bjso.12430openalex-snapshot
Science as collaborative knowledge generation
inferredcites →https://doi.org/10.1111/ele.13994openalex-snapshot
PERFICT: A Re‐imagined foundation for predictive ecology
inferredcites →https://doi.org/10.1111/j.1366-9516.2005.00147.xopenalex-snapshot
Recent advances in the study of long‐distance dispersal of aquatic invertebrates via birds
inferredcites →https://doi.org/10.1111/nyas.13207openalex-snapshot
A vision for collaborative training infrastructure for bioinformatics
inferredcites →https://doi.org/10.1128/iai.02939-14openalex-snapshot
Competitive Science: Is Competition Ruining Science?
inferredcites →https://doi.org/10.1162/dint_a_00136openalex-snapshot
Galaxy: A Decade of Realising CWFR Concepts
inferredcites →https://doi.org/10.1186/s12898-016-0103-yopenalex-snapshot
BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology
inferredcites →https://doi.org/10.1186/s13012-014-0172-2openalex-snapshot
Using the Knowledge to Action Framework in practice: a citation analysis and systematic review
inferredcites →https://doi.org/10.12688/f1000research.11837.1openalex-snapshot
ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR
inferredcites →https://doi.org/10.1371/journal.pbio.3000763openalex-snapshot
Low availability of code in ecology: A call for urgent action
inferredcites →https://doi.org/10.1371/journal.pcbi.1004525openalex-snapshot
Ten Simple Rules for Creating a Good Data Management Plan
inferredcites →https://doi.org/10.1371/journal.pcbi.1010752openalex-snapshot
Galaxy Training: A powerful framework for teaching!
inferredcites →https://doi.org/10.1371/journal.pmed.1004085openalex-snapshot
Correction: Why Most Published Research Findings Are False
inferredcites →https://doi.org/10.3233/ds-190026openalex-snapshot
Towards FAIR principles for research software
inferredcites →https://doi.org/10.3233/ds-210053openalex-snapshot
Packaging research artefacts with RO-Crate
inferredcites →https://doi.org/10.32942/x2cg64openalex-snapshot
Implementing Code Review in the Scientific Workflow: Insights from Ecology and Evolutionary Biology
inferredcites →https://doi.org/10.3389/fninf.2017.00076openalex-snapshot
Reproducibility vs. Replicability: A Brief History of a Confused Terminology
inferredcites →https://doi.org/10.3389/frma.2021.678554openalex-snapshot
Knowledge and Attitudes Among Life Scientists Toward Reproducibility Within Journal Articles: A Research Survey
inferredcites →https://doi.org/10.4000/books.oep.14692openalex-snapshot
Qu’est-ce que le travail scientifique des données ?
inferredcites →https://doi.org/10.5334/dsj-2020-043openalex-snapshot
The CARE Principles for Indigenous Data Governance
inferredcites →https://doi.org/10.5334/dsj-2022-002openalex-snapshot
Barriers to Full Participation in the Open Science Life Cycle among Early Career Researchers
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/aca.8.e151297zenodo-depositor-declared
OneWater FAIR Data Platform: towards a national FAIR water data platform and community
inferred← citeshttps://doi.org/10.24072/pci.ecology.100694openalex-snapshot
Best practices for ecological analysis are required to act on concrete challenges
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