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Community-Driven Data Analysis Training for Biology
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-1-4899-7475-4openalex-snapshot
Encyclopedia of Metagenomics
inferredcites →https://doi.org/10.1007/978-1-4899-7478-5_802openalex-snapshot
Krona: Interactive Metagenomic Visualization in a Web Browser
inferredcites →https://doi.org/10.1038/sdata.2016.18openalex-snapshot
The FAIR Guiding Principles for scientific data management and stewardship
inferredcites →https://doi.org/10.1093/bib/bbt043openalex-snapshot
Best practices in bioinformatics training for life scientists
inferredcites →https://doi.org/10.1093/bib/bbx100openalex-snapshot
A global perspective on evolving bioinformatics and data science training needs
inferredcites →https://doi.org/10.1093/bioinformatics/btt113openalex-snapshot
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
inferredcites →https://doi.org/10.1093/nar/gkw343openalex-snapshot
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
inferredcites →https://doi.org/10.1109/fie.2007.4417892openalex-snapshot
Enhancing traditional classroom instruction with web-based Statics course
inferredcites →https://doi.org/10.1111/nyas.13207openalex-snapshot
A vision for collaborative training infrastructure for bioinformatics
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1186/1471-2105-12-385openalex-snapshot
Interactive metagenomic visualization in a Web browser
inferredcites →https://doi.org/10.12688/f1000research.11837.1openalex-snapshot
ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR
inferredcites →https://doi.org/10.12688/f1000research.3-62.v1openalex-snapshot
Software Carpentry: lessons learned
inferredcites →https://doi.org/10.12688/f1000research.3-62.v2openalex-snapshot
Software Carpentry: lessons learned
inferredcites →https://doi.org/10.1371/journal.pbio.1002195openalex-snapshot
Big Data: Astronomical or Genomical?
inferredcites →https://doi.org/10.1371/journal.pcbi.1005425openalex-snapshot
Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers
inferredcites →https://doi.org/10.1371/journal.pcbi.1005755openalex-snapshot
Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators
inferredcites →https://doi.org/10.2190/f59b-382t-e785-e4j4openalex-snapshot
Replacing Lecture with Web-Based Course Materials
inferredcites →https://doi.org/10.7490/f1000research.1111409.1openalex-snapshot
TeSS – Training Portal
inferredcites →https://doi.org/10.7554/elife.32715openalex-snapshot
The future of graduate and postdoctoral training in the biosciences
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Protocol for assay of transposase accessible chromatin sequencing in non-model species
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Metatranscriptomic Analysis Reveals the Coexpression of Hydrogen-Producing and Homoacetogenesis Genes in Dark Fermentative Reactors Operated at High Substrate Loads
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Updates on metaQuantome Software for Quantitative Metaproteomics
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MaxQuant and MSstats in Galaxy Enable Reproducible Cloud-Based Analysis of Quantitative Proteomics Experiments for Everyone
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Micronanobubble Aeration Enhances Plant Yield and Nitrification in Aquaponic Systems
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Enhancing Digestate-Based Bioponics through Ceramsite Addition with and without Biochar: Effects on Water Quality, Nutrient Recovery, Heavy Metal Removal, and Microbial Community Composition
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Behavioral and transcriptomic markers of susceptibility to escalate fentanyl intake
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Transcriptional regulation of the postnatal cardiac conduction system heterogeneity
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Integrative functional genomics analysis identifies pleiotropic genes for vascular diseases
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Noncanonical inheritance of phenotypic information by protein amyloids
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Alternate RNA decoding results in stable and abundant proteins in mammals
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DSF inactivator RpfB homologous FadD upregulated in Bradyrhizobium japonicum under iron limiting conditions
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Antimicrobial peptide glatiramer acetate targets Pseudomonas aeruginosa lipopolysaccharides to breach membranes without altering lipopolysaccharide modification
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Human γδ T Cell Function Is Impaired Upon Mevalonate Pathway Inhibition
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Insight into the nodal cells transcriptome of the streptophyte green alga Chara braunii S276
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The impact of salt stress on the physiology and the transcriptome of the model streptophyte green alga Chara braunii
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A pathogenic role for histone H3 copper reductase activity in a yeast model of Friedreich’s ataxia
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Confrontations between Aspergillus nidulans and microbial biocontrol agents cause differential regulation of secondary metabolism and synthesis of chemicals toxic to human kidney and colon cells
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The catheterized urinary tract selects for MRR1 -mediated efflux and fluconazole resistance in Candida albicans biofilms
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Nutrition-induced changes in the microbiota can cause dysbiosis and disease development
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A novel clinical metaproteomics workflow enables bioinformatic analysis of host-microbe dynamics in disease
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Host–virus interactions during infection with a wild-type ILTV strain or a glycoprotein G deletion mutant ILTV vaccine strain in an ex vivo system
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Modulation of AMPK Significantly Alters Uveal Melanoma Tumor Cell Viability
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The LCHADD Mouse Model Recapitulates Early-Stage Chorioretinopathy in LCHADD Patients
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Automated Isoform Diversity Detector (AIDD): a pipeline for investigating transcriptome diversity of RNA-seq data
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Co-localization of clusters of TCR-regulated genes with TAD rearrangements
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Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection
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Effect of conditioned media from Aeromonas caviae on the transcriptomic changes of the porcine isolates of Pasteurella multocida
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Impact of subtype C-specific amino acid variants on HIV-1 Tat-TAR interaction: insights from molecular modelling and dynamics
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iPepGen: a modular, immunopeptidogenomic analysis pipeline for discovery, verification, and prioritization of cancer peptide neoantigen candidates
inferred← citeshttps://doi.org/10.1186/s13071-021-04915-yopenalex-snapshot
Comparative analysis of the transcriptional responses of five Leishmania species to trivalent antimony
inferred← citeshttps://doi.org/10.1186/s13148-021-01089-3openalex-snapshot
The role of epigenetic modifications for the pathogenesis of Crohn's disease
inferred← citeshttps://doi.org/10.1186/s13321-020-00442-7openalex-snapshot
The ChemicalToolbox: reproducible, user-friendly cheminformatics analysis on the Galaxy platform
inferred← citeshttps://doi.org/10.1186/s13321-020-00451-6openalex-snapshot
Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial
inferred← citeshttps://doi.org/10.1186/s13321-022-00588-6openalex-snapshot
Galaxy workflows for fragment-based virtual screening: a case study on the SARS-CoV-2 main protease
inferred← citeshttps://doi.org/10.1242/dev.202729openalex-snapshot
The Drosophila histone methyltransferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation
inferred← citeshttps://doi.org/10.12688/f1000research.122312.1openalex-snapshot
Community-driven ELIXIR activities in single-cell omics
inferred← citeshttps://doi.org/10.12688/f1000research.122924.1openalex-snapshot
Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics
inferred← citeshttps://doi.org/10.12688/f1000research.122924.2openalex-snapshot
Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics
inferred← citeshttps://doi.org/10.12688/f1000research.16450.1openalex-snapshot
Improve your Galaxy text life: The Query Tabular Tool
inferred← citeshttps://doi.org/10.12688/f1000research.16450.2openalex-snapshot
Improve your Galaxy text life: The Query Tabular Tool
inferred← citeshttps://doi.org/10.12688/f1000research.172914.1openalex-snapshot
The complete genome sequence of the ghost bat, Macroderma gigas
inferred← citeshttps://doi.org/10.12688/f1000research.20244.1openalex-snapshot
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR
inferred← citeshttps://doi.org/10.12688/f1000research.20244.2openalex-snapshot
The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR
inferred← citeshttps://doi.org/10.12688/f1000research.28608.1openalex-snapshot
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework
inferred← citeshttps://doi.org/10.1371/journal.pbio.2005561openalex-snapshot
Building a local community of practice in scientific programming for life scientists
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1007695openalex-snapshot
Ad hoc efforts for advancing data science education
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1008214openalex-snapshot
Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1008715openalex-snapshot
Application of a bioinformatics training delivery method for reaching dispersed and distant trainees
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1008922openalex-snapshot
A constructivist-based proposal for bioinformatics teaching practices during lockdown
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1008923openalex-snapshot
Fostering accessible online education using Galaxy as an e-learning platform
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1010220openalex-snapshot
Ten simple rules for leveraging virtual interaction to build higher-level learning into bioinformatics short courses
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1010752openalex-snapshot
Galaxy Training: A powerful framework for teaching!
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1011929openalex-snapshot
teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering
inferred← citeshttps://doi.org/10.1371/journal.pone.0311874openalex-snapshot
Transcriptomic analyses of host-virus interactions during in vitro infection with wild-type and glycoprotein g-deficient (ΔgG) strains of ILTV in primary and continuous cell cultures
inferred← citeshttps://doi.org/10.1371/journal.ppat.1008643openalex-snapshot
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics
inferred← citeshttps://doi.org/10.1371/journal.ppat.1012337openalex-snapshot
Varroa destructor shapes the unique viral landscapes of the honey bee populations of the Azores archipelago
inferred← citeshttps://doi.org/10.1556/2065.181.2020.1.13openalex-snapshot
Bioinformatika-oktatás élettudományi hallgatók részére a Galaxy-platform segítségével Teaching Bioinformatics for Students of Life Science on the Galaxy Platform
inferred← citeshttps://doi.org/10.15698/mic2024.05.823openalex-snapshot
Polyadenylated versions of small non-coding RNAs in Saccharomyces cerevisiae are degraded by Rrp6p/Rrp47p independent of the core nuclear exosome
inferred← citeshttps://doi.org/10.17116/kurort202310005127openalex-snapshot
Microbiome of therapeutic muds used in Tatarstan
inferred← citeshttps://doi.org/10.18174/573954openalex-snapshot
Exploring novel terpene synthases for fragrance and flavour : From generating libraries to screening approaches
inferred← citeshttps://doi.org/10.20944/preprints202009.0457.v1openalex-snapshot
Fostering Accessible Online Education Using Galaxy as an e-learning Platform
inferred← citeshttps://doi.org/10.21203/rs.3.rs-10018077/v1openalex-snapshot
An Accessible Recirculating Organ-on-a-Chip Model of Pregnancy-Associated Breast Cancer Reveals ER Stress-Driven Tumour-Placental Cross-Talk
inferred← citeshttps://doi.org/10.21203/rs.3.rs-139979/v1openalex-snapshot
Upper/Lower Respiratory Tract Microbiome Changes in AECOPD and COPD
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1435321/v1openalex-snapshot
CRELD2 is a novel modulator of calcium mobilisation and calcineurin- NFAT signalling during osteoclast differentiation
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2232367/v1openalex-snapshot
The red seaweed Asparagopsis taxiformis genome and integrative -omics analysis
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3531529/v1openalex-snapshot
Possible Cumulative Effect of Spice-Consumption on Mortality Rate and the Number of Genomic Variants of SARS-CoV-2: The USA vs. Higher Spice-Intake Countries
inferred← citeshttps://doi.org/10.21203/rs.3.rs-643177/v1openalex-snapshot
Real-World Study on Upper/Lower Respiratory Tract Microbiome Changes in AECOPD and COPD
inferred← citeshttps://doi.org/10.21776/ub.jfmr.2021.005.01.11openalex-snapshot
IDENTIFIKASI KOMUNITAS DIATOM YANG BERASOSIASI PADA MAKROALGA PADINA SP. DI PERAIRAN PULAU PRAMUKA DAN SEMAK DAUN MELALUI PENDEKATAN METAGENOMIK
inferred← citeshttps://doi.org/10.2323/jgam.2022.10.001openalex-snapshot
Structure and Functional Potential of Arctic Sea Sediment Microbiota
inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2022.528openalex-snapshot
The first cavefish in the Dinaric Karst? Cave colonization made possible by phenotypic plasticity in Telestes karsticus
inferred← citeshttps://doi.org/10.24918/cs.2023.8openalex-snapshot
How to Find a Gene: Retrieving Information From Gene Databases
inferred← citeshttps://doi.org/10.2991/978-94-6463-164-7_15openalex-snapshot
Establishing the Taxa with Phylogenetic Profile and in-silico Ayurvedic Remedy of Cervicitis Microbiome
inferred← citeshttps://doi.org/10.32604/csse.2023.025611openalex-snapshot
Breast Calcifications and Histopathological Analysis on Tumour Detection by CNN
inferred← citeshttps://doi.org/10.32942/x20w3qopenalex-snapshot
Building a Portuguese Coalition for Biodiversity Genomics
inferred← citeshttps://doi.org/10.32942/x2g033openalex-snapshot
Guidance framework to apply good practices in ecological data analysis: Lessons learned from building Galaxy-Ecology
inferred← citeshttps://doi.org/10.3389/fcell.2022.945572openalex-snapshot
Mutation in Drosophila concentrative nucleoside transporter 1 alters spermatid maturation and mating behavior
inferred← citeshttps://doi.org/10.3389/feduc.2021.711512openalex-snapshot
HITS: Harnessing a Collaborative Training Network to Create Case Studies that Integrate High-Throughput, Complex Datasets into Curricula
inferred← citeshttps://doi.org/10.3389/feduc.2021.711618openalex-snapshot
The Bioinformatics Virtual Coordination Network: An Open-Source and Interactive Learning Environment
inferred← citeshttps://doi.org/10.3389/ffunb.2025.1432339openalex-snapshot
Dispensable genome and segmental duplications drive the genome plasticity in Fusarium solani
inferred← citeshttps://doi.org/10.3389/fimmu.2024.1458218openalex-snapshot
Clinical assessment and transcriptome analysis of host immune responses in a vaccination-challenge study using a glycoprotein G deletion mutant vaccine strain of infectious laryngotracheitis virus
inferred← citeshttps://doi.org/10.3389/fmicb.2021.578859openalex-snapshot
Resequencing of Microbial Isolates: A Lab Module to Introduce Novices to Command-Line Bioinformatics
inferred← citeshttps://doi.org/10.3389/fmicb.2021.625324openalex-snapshot
The Bacterial Community Diversity of Bathroom Hot Tap Water Was Significantly Lower Than That of Cold Tap and Shower Water
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1056388openalex-snapshot
Adaptive lifestyle of bacteria determines phage-bacteria interaction
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1095045openalex-snapshot
Development of rapid and precise approach for quantification of bacterial taxa correlated with soil health
inferred← citeshttps://doi.org/10.3389/fmicb.2022.961736openalex-snapshot
Hormetic effect of 17α-ethynylestradiol on activated sludge microbial community response
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1251065openalex-snapshot
Niclosamide as a chemical probe for analyzing SARS-CoV-2 modulation of host cell lipid metabolism
inferred← citeshttps://doi.org/10.3389/fphys.2021.650964openalex-snapshot
Small Conductance Ca2 +-Activated K+ (SK) Channel mRNA Expression in Human Atrial and Ventricular Tissue: Comparison Between Donor, Atrial Fibrillation and Heart Failure Tissue
inferred← citeshttps://doi.org/10.3390/antibiotics11010029openalex-snapshot
Whole-Genome Sequencing Reveals Recent Transmission of Multidrug-Resistant Mycobacterium tuberculosis CAS1-Kili Strains in Lusaka, Zambia
inferred← citeshttps://doi.org/10.3390/biomedicines10071466openalex-snapshot
SOX9 Protein in Pancreatic Cancer Regulates Multiple Cellular Networks in a Cell-Specific Manner
inferred← citeshttps://doi.org/10.3390/biomedinformatics2010003openalex-snapshot
Analysis of Single-Cell RNA-Sequencing Data: A Step-by-Step Guide
inferred← citeshttps://doi.org/10.3390/cancers14092070openalex-snapshot
Glioblastoma Embryonic-like Stem Cells Exhibit Immune-Evasive Phenotype
inferred← citeshttps://doi.org/10.3390/cells12202483openalex-snapshot
Integrated Meta-Omics Analysis Unveils the Pathways Modulating Tumorigenesis and Proliferation in High-Grade Meningioma
inferred← citeshttps://doi.org/10.3390/ddc4030029openalex-snapshot
Ex Vivo Molecular Studies and In Silico Small Molecule Inhibition of Plasmodium falciparum Bromodomain Protein 1
inferred← citeshttps://doi.org/10.3390/genes12091307openalex-snapshot
Identification of New Chromosomal Loci Involved in com Genes Expression and Natural Transformation in the Actinobacterial Model Organism Micrococcus luteus
inferred← citeshttps://doi.org/10.3390/ijms22157876openalex-snapshot
Males and Females Have Distinct Molecular Events in the Articular Cartilage during Knee Osteoarthritis
inferred← citeshttps://doi.org/10.3390/ijms241310961openalex-snapshot
Meta-Analysis of Mechano-Sensitive Ion Channels in Human Hearts: Chamber- and Disease-Preferential mRNA Expression
inferred← citeshttps://doi.org/10.3390/ijms241914816openalex-snapshot
Prioritizing Endangered Species in Genome Sequencing: Conservation Genomics in Action with the First Platinum-Standard Reference-Quality Genome of the Critically Endangered European Mink Mustela lutreola L., 1761
inferred← citeshttps://doi.org/10.3390/ijms26062652openalex-snapshot
Deciphering of SOX9 Functions in Pancreatic Cancer Cells
inferred← citeshttps://doi.org/10.3390/life12040521openalex-snapshot
Satellitome Analysis and Transposable Elements Comparison in Geographically Distant Populations of Spodoptera frugiperda
inferred← citeshttps://doi.org/10.3390/microorganisms11010157openalex-snapshot
Co-Infection of Potential Tick-Borne Pathogens of the Order Rickettsiales and Borrelia burgdorferi s. l. and Their Link to Season and Area in Germany
inferred← citeshttps://doi.org/10.3390/microorganisms14030684openalex-snapshot
Bacterial Strains from Soybean Nodules in the Lower Volga Region Belong to a New Subspecies Bradyrhizobium japonicum subsp. saratovii subsp. nov.
inferred← citeshttps://doi.org/10.3390/pathogens12091159openalex-snapshot
A Transcriptional Analysis of Cattle Immune Cells Reveals a Central Role of Type 1 Interferon in the In Vitro Innate Immune Response against Mycobacterium bovis
inferred← citeshttps://doi.org/10.3390/plants12122305openalex-snapshot
Differential RNA-Seq Analysis Predicts Genes Related to Terpene Tailoring in Caryopteris × clandonensis
inferred← citeshttps://doi.org/10.3410/f.735758802.793561640openalex-snapshot
Faculty Opinions recommendation of The RNA workbench 2.0: next generation RNA data analysis.
inferred← citeshttps://doi.org/10.36255/exonpublications.bioinformatics.2021.ch2openalex-snapshot
Single-Cell RNA Sequencing Procedures and Data Analysis
inferred← citeshttps://doi.org/10.37044/osf.io/qjbxcopenalex-snapshot
How to increase the findability, visibility, and impact of Galaxy tools for your scientific community
inferred← citeshttps://doi.org/10.37044/osf.io/s7truopenalex-snapshot
How to improve the annotation of Galaxy resources? Outcomes of an online hackathon for improving the annotation of Galaxy resources for microbial data resources
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