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Linking Environmental DNA and RNA for Improved Detection of the Marine Invasive Fanworm Sabella spallanzanii

https://doi.org/10.3389/fmars.2019.00621
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt ( Triturus cristatus )
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Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution
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Examples of Current International, Regional and National Regulatory Frameworks for Preventing and Managing Marine Bioinvasions
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Reproduction and distribution of the invasive European fanworm Sabella spallanzanii (Polychaeta: Sabellidae) in Port Phillip Bay, Victoria, Australia
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Development of a real-time polymerase chain reaction assay for the detection of the invasive Mediterranean fanworm, Sabella spallanzanii, in environmental samples
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Development and preliminary validation of a multi-trophic metabarcoding biotic index for monitoring benthic organic enrichment
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Protist metabarcoding and environmental biomonitoring: Time for change
inferredcites →https://doi.org/10.1016/j.marenvres.2005.06.001openalex-snapshot
Sabella spallanzanii filter-feeding on bacterial community: Ecological implications and applications
inferredcites →https://doi.org/10.1016/j.marenvres.2016.08.009openalex-snapshot
First evaluation of foraminiferal metabarcoding for monitoring environmental impact from an offshore oil drilling site
inferredcites →https://doi.org/10.1016/j.marpol.2017.08.014openalex-snapshot
Recommendations for developing and applying genetic tools to assess and manage biological invasions in marine ecosystems
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Sensitivity and cost considerations for the detection and eradication of marine pests in ports
inferredcites →https://doi.org/10.1016/j.marpolbul.2017.11.065openalex-snapshot
Environmental DNA metabarcoding of benthic bacterial communities indicates the benthic footprint of salmon aquaculture
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Enhancing passive sampling tools for detecting marine bioinvasions
inferredcites →https://doi.org/10.1016/j.scitotenv.2018.11.247openalex-snapshot
Assessing the fate of brown trout (Salmo trutta) environmental DNA in a natural stream using a sensitive and specific dual-labelled probe
inferredcites →https://doi.org/10.1016/j.tree.2019.05.003openalex-snapshot
Can Environmental RNA Revolutionize Biodiversity Science?
inferredcites →https://doi.org/10.1016/s0308-597x(03)00041-1openalex-snapshot
Marine invasive alien species: a threat to global biodiversity
inferredcites →https://doi.org/10.1017/s0025315417000261openalex-snapshot
Phylogeography of the invasive Mediterranean fan worm,Sabella spallanzanii(Gmelin, 1791), in Australia and New Zealand
inferredcites →https://doi.org/10.1021/acs.est.5b00253openalex-snapshot
Droplet Digital Polymerase Chain Reaction (PCR) Outperforms Real-Time PCR in the Detection of Environmental DNA from an Invasive Fish Species
inferredcites →https://doi.org/10.1021/acs.est.6b03114openalex-snapshot
Quantification of Environmental DNA (eDNA) Shedding and Decay Rates for Three Marine Fish
inferredcites →https://doi.org/10.1021/es404734popenalex-snapshot
Environmental Conditions Influence eDNA Persistence in Aquatic Systems
inferredcites →https://doi.org/10.1021/es5034052openalex-snapshot
Quantifying Environmental DNA Signals for Aquatic Invasive Species Across Multiple Detection Platforms
inferredcites →https://doi.org/10.1038/362709a0openalex-snapshot
Instability and decay of the primary structure of DNA
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/s41598-017-12501-5openalex-snapshot
Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment
inferredcites →https://doi.org/10.1038/s41598-018-30179-1openalex-snapshot
Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing
inferredcites →https://doi.org/10.1038/s41598-018-34541-1openalex-snapshot
Combining morpho-taxonomy and metabarcoding enhances the detection of non-indigenous marine pests in biofouling communities
inferredcites →https://doi.org/10.1038/s41598-019-47899-7openalex-snapshot
Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water
inferredcites →https://doi.org/10.1038/sdata.2017.27openalex-snapshot
Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples
inferredcites →https://doi.org/10.1071/mf15349openalex-snapshot
Improving reliability in environmental DNA detection surveys through enhanced quality control
inferredcites →https://doi.org/10.1080/00288330.2004.9517250openalex-snapshot
New Zealand marine biosecurity: Delivering outcomes in a fluid environment
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Molecular genetic tools for environmental monitoring of New Zealand's aquatic habitats, past, present and the future
inferredcites →https://doi.org/10.1093/bioinformatics/btn322openalex-snapshot
Database indexing for production MegaBLAST searches
inferredcites →https://doi.org/10.1093/femsec/fiv089openalex-snapshot
Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high-throughput sequencing
inferredcites →https://doi.org/10.1093/femsec/fiy167openalex-snapshot
Incorporating molecular-based functional and co-occurrence network properties into benthic marine impact assessments
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Database Resources of the National Center for Biotechnology Information
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Environmental DNA
inferredcites →https://doi.org/10.1101/164046openalex-snapshot
Environmental DNA metabarcoding of rivers: Not all eDNA is everywhere, and not all the time
inferredcites →https://doi.org/10.1111/1365-2664.12306openalex-snapshot
REVIEW: The detection of aquatic animal species using environmental DNA – a review of eDNA as a survey tool in ecology
inferredcites →https://doi.org/10.1111/1755-0998.12159openalex-snapshot
Factors influencing detection of eDNA from a stream‐dwelling amphibian
inferredcites →https://doi.org/10.1111/1755-0998.12459openalex-snapshot
Comparative study of the validity of three regions of the 18S‐ rRNA gene for massively parallel sequencing‐based monitoring of the planktonic eukaryote community
inferredcites →https://doi.org/10.1111/1755-0998.12522openalex-snapshot
Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions
inferredcites →https://doi.org/10.1111/1755-0998.12888openalex-snapshot
Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples
inferredcites →https://doi.org/10.1111/1755-0998.12971openalex-snapshot
Environmental DNA metabarcoding studies are critically affected by substrate selection
inferredcites →https://doi.org/10.1111/1755-0998.13055openalex-snapshot
A comparison of droplet digital polymerase chain reaction (PCR), quantitative PCR and metabarcoding for species‐specific detection in environmental DNA
inferredcites →https://doi.org/10.1111/2041-210x.12595openalex-snapshot
Critical considerations for the application of environmental DNA methods to detect aquatic species
inferredcites →https://doi.org/10.1111/ddi.12465openalex-snapshot
Early detection of aquatic invaders using metabarcoding reveals a high number of non‐indigenous species in C anadian ports
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05261.xopenalex-snapshot
Meta‐barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05418.xopenalex-snapshot
Monitoring endangered freshwater biodiversity using environmental DNA
inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01678.xopenalex-snapshot
bold : The Barcode of Life Data System (http://www.barcodinglife.org)
inferredcites →https://doi.org/10.1111/mec.13428openalex-snapshot
Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
inferredcites →https://doi.org/10.1111/mec.13481openalex-snapshot
Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA
inferredcites →https://doi.org/10.1111/mec.13660openalex-snapshot
Environmental DNA metabarcoding of lake fish communities reflects long‐term data from established survey methods
inferredcites →https://doi.org/10.1111/mec.14350openalex-snapshot
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
inferredcites →https://doi.org/10.1111/mec.14840openalex-snapshot
Quantitative and qualitative assessment of pollen DNA metabarcoding using constructed species mixtures
inferredcites →https://doi.org/10.1128/aem.64.11.4433-4438.1998openalex-snapshot
Implications of rRNA Operon Copy Number and Ribosome Content in the Marine Oligotrophic Ultramicrobacterium Sphingomonas sp. Strain RB2256
inferredcites →https://doi.org/10.1128/aem.70.7.4384-4386.2004openalex-snapshot
Degradation and Turnover of Extracellular DNA in Marine Sediments: Ecological and Methodological Considerations
inferredcites →https://doi.org/10.1128/msystems.00191-16openalex-snapshot
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
inferredcites →https://doi.org/10.1139/gen-2018-0021openalex-snapshot
Considerations for incorporating real-time PCR assays into routine marine biosecurity surveillance programmes: a case study targeting the Mediterranean fanworm ( Sabella spallanzanii ) and club tunicate ( Styela clava )
inferredcites →https://doi.org/10.1186/1471-2105-12-77openalex-snapshot
pROC: an open-source package for R and S+ to analyze and compare ROC curves
inferredcites →https://doi.org/10.1186/1742-9994-10-34openalex-snapshot
A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
inferredcites →https://doi.org/10.1186/s13007-014-0042-6openalex-snapshot
Reverse transcriptase droplet digital PCR shows high resilience to PCR inhibitors from plant, soil and water samples
inferredcites →https://doi.org/10.1371/journal.pone.0041732openalex-snapshot
Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0090529openalex-snapshot
Environmental Status Assessment Using DNA Metabarcoding: Towards a Genetics Based Marine Biotic Index (gAMBI)
inferredcites →https://doi.org/10.1371/journal.pone.0103767openalex-snapshot
Assessing Environmental DNA Detection in Controlled Lentic Systems
inferredcites →https://doi.org/10.1371/journal.pone.0187636openalex-snapshot
Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications
inferredcites →https://doi.org/10.1371/journal.pone.0200027openalex-snapshot
Reproductive strategy and gamete development of an invasive fanworm, Sabella spallanzanii (Polychaeta: Sabellidae), a field study in Gulf St Vincent, South Australia
inferredcites →https://doi.org/10.1371/journal.pone.0202383openalex-snapshot
Historical baselines in marine bioinvasions: Implications for policy and management
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fmars.2018.00133openalex-snapshot
Environmental DNA (eDNA) From the Wake of the Whales: Droplet Digital PCR for Detection and Species Identification
inferredcites →https://doi.org/10.3389/fmars.2018.00322openalex-snapshot
Advantages and Limitations of Environmental DNA/RNA Tools for Marine Biosecurity: Management and Surveillance of Non-indigenous Species
inferredcites →https://doi.org/10.3390/bioengineering3010007openalex-snapshot
DNA and RNA Extraction and Quantitative Real-Time PCR-Based Assays for Biogas Biocenoses in an Interlaboratory Comparison
inferredcites →https://doi.org/10.3391/ai.2011.6.3.04openalex-snapshot
Arrival of the alien fanworm Sabella spallanzanii (Gmelin, 1791) (Polychaeta: Sabellidae) in two New Zealand harbours
inferredcites →https://doi.org/10.3391/mbi.2018.9.1.03openalex-snapshot
Development and field validation of an environmental DNA (eDNA) assay for invasive clams of the genus Corbicula
inferredcites →https://doi.org/10.5194/bg-10-7463-2013openalex-snapshot
Foraminiferal survival after long-term in situ experimentally induced anoxia
inferredcites →https://doi.org/10.7717/peerj.2807openalex-snapshot
Spatio-temporal monitoring of deep-sea communities using metabarcoding of sediment DNA and RNA
inferredcites →https://doi.org/10.7717/peerj.3347openalex-snapshot
Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities
inferredcites →https://doi.org/10.7717/peerj.4705openalex-snapshot
DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Comparison of three strategies for local bioassessments in streams using environmental DNA and RNA metabarcoding of macroinvertebrates
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Metabarcoding as a tool to enhance marine surveillance of nonindigenous species in tropical harbors: A case study in Tahiti
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Short‐term temporal variation of coastal marine eDNA
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Assessing the degradation of environmental DNA and RNA based on genomic origin in a metabarcoding context
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Beyond species detection—leveraging environmental DNA and environmental RNA to push beyond presence/absence applications
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Environmental DNA and RNA in aquatic community ecology: Toward methodological standardization
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Environmental DNA–RNA dynamics provide insights for effective monitoring of marine invasive species
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Ebbs and Flows of Marine Biodiversity: Navigating Spatiotemporal Patterns of Environmental DNA in a Coastal Tidal Ecosystem
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CRISPR ‐Based Environmental Biosurveillance Assisted via Artificial Intelligence Design of Guide‐ RNAs
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Eastward Expansion of Round Goby in New York: Assessment of Detection Methods and Current Range
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Environmental DNA Methods for Ecological Monitoring and Biodiversity Assessment in Estuaries
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Fish environmental RNA enables precise ecological surveys with high positive predictivity
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Evaluating eDNA and eRNA metabarcoding for aquatic biodiversity assessment: From bacteria to vertebrates
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Evaluating the effectiveness of the eRNA technique in monitoring fish biodiversity – A case study in the Qingdao offshore, China
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Fish eDNA detections in ports mirror fishing fleet activities and highlight the spread of non-indigenous species in the Mediterranean Sea
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Status and prospects of marine NIS detection and monitoring through (e)DNA metabarcoding
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Fish environmental RNA sequencing sensitively captures accumulative stress responses through short-term aquarium sampling
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CRISPR as a next-generation environmental biosurveillance tool for air, land, and water
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Environmental RNA as a Noninvasive Tool for Assessing Toxic Effects in Fish: A Proof-of-concept Study Using Japanese Medaka Exposed to Pyrene
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Water Environmental RNA Reveals Dose-Dependent Toxicant Responses in Fish
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Release and degradation of dissolved environmental RNAs from zebrafish cells
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CRISPR-Cas-Based Biomonitoring for Marine Environments: Toward CRISPR RNA Design Optimization Via Deep Learning
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The Promise and Pitfalls of Environmental DNA and RNA Approaches for the Monitoring of Human and Animal Pathogens from Aquatic Sources
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Environmental DNA (eDNA) metabarcoding surveys extend the range of invasion for non-indigenous freshwater species in Eastern Europe
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Genome‐scale target capture of mitochondrial and nuclear environmental DNA from water samples
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Environmental RNA can distinguish life stages in amphibian populations
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The bacterial signature offers vision into the machinery of coral fitness across high‐latitude coral reef in the South China Sea
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Knowledge gaps and opportunities in water-quality drivers of aquatic ecosystem health
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Eco-Plastics in the Sea: Succession of Micro- and Macro-Fouling on a Biodegradable Polymer Augmented With Oyster Shell
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Exploring the Biotechnological Value of Marine Invertebrates: A Closer Look at the Biochemical and Antioxidant Properties of Sabella spallanzanii and Microcosmus squamiger
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Reinforcement of Environmental DNA Based Methods (Sensu Stricto) in Biodiversity Monitoring and Conservation: A Review
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Wanted Dead or Alive: Enhancing Spatiotemporal Resolution of Environmental Nucleic Acid Techniques in Macro-Organism Biosecurity
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Environmental DNA and RNA as Records of Human Exposome, Including Biotic/Abiotic Exposures and Its Implications in the Assessment of the Role of Environment in Chronic Diseases
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Towards the Optimization of eDNA/eRNA Sampling Technologies for Marine Biosecurity Surveillance
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Observing Life in the Sea Using Environmental DNA
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DNA metabarcoding - Guidelines to monitor phytoplankton diversity and distribution in marine and brackish waters
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High-throughput sequencing techniques for the detection and survey of marine non-indigenous species : a valuable addition to traditional methods ?
inferred← citeshttps://doi.org/10.7287/peerj.14993v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14993v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14993v0.2/reviews/3openalex-snapshot
Peer Review #3 of "Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.14993openalex-snapshot
Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility
inferred← citeshttps://doi.org/10.7717/peerj.19043openalex-snapshot
Investigating passive eDNA samplers and submergence times for marine surveillance
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.