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Identification of Quantitative Trait Loci Controlling the Development of Prickles in Eggplant by Genome Re-sequencing Analysis

https://doi.org/10.3389/fpls.2021.731079

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Genetic mapping of a major dominant gene for resistance to Ralstonia solanacearum in eggplant

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Detailed mapping of a resistance locus against Fusarium wilt in cultivated eggplant (Solanum melongena)

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Genetic determinism of prickles in rose

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WUSCHEL: a master regulator in plant growth signaling

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QTL hotspots in eggplant (Solanum melongena) detected with a high resolution map and CIM analysis

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QTL analysis reveals new eggplant loci involved in resistance to fungal wilts

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Genetic divergence analysis in eggplant (Solanum melongena L.) and allied species

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ENHANCER of TRYand CPC 2(ETC2) reveals redundancy in the region-specific control of trichome development of Arabidopsis

inferredcites →https://doi.org/10.1016/0092-8674(91)90523-2openalex-snapshot

A myb gene required for leaf trichome differentiation in Arabidopsis is expressed in stipules

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Reprogramming of Stem Cell Activity to Convert Thorns into Branches

inferredcites →https://doi.org/10.1016/j.cub.2020.09.037openalex-snapshot

A WOX/Auxin Biosynthesis Module Controls Growth to Shape Leaf Form

inferredcites →https://doi.org/10.1016/j.gpb.2017.01.001openalex-snapshot

GSA: Genome Sequence Archive

inferredcites →https://doi.org/10.1016/j.molp.2017.09.015openalex-snapshot

Hairy Leaf 6, an AP2/ERF Transcription Factor, Interacts with OsWOX3B and Regulates Trichome Formation in Rice

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The patterning of epidermal hairs in Arabidopsis—updated

inferredcites →https://doi.org/10.1016/j.plantsci.2015.07.005openalex-snapshot

The Arabidopsis lectin EULS3 is involved in stomatal closure

inferredcites →https://doi.org/10.1016/j.ydbio.2003.12.037openalex-snapshot

The ENHANCER OF TRY AND CPC1 gene acts redundantly with TRIPTYCHON and CAPRICE in trichome and root hair cell patterning in Arabidopsis

inferredcites →https://doi.org/10.1023/a:1007585532036openalex-snapshot

A Rapid DNA Minipreparation Method Suitable for AFLP and Other PCR Applications

inferredcites →https://doi.org/10.1038/nprot.2008.73openalex-snapshot

Analyzing real-time PCR data by the comparative CT method

inferredcites →https://doi.org/10.1038/s41438-020-00391-0openalex-snapshot

A high-quality chromosome-level genome assembly reveals genetics for important traits in eggplant

inferredcites →https://doi.org/10.1038/s41598-019-47985-wopenalex-snapshot

A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/dnares/dsu027openalex-snapshot

Draft Genome Sequence of Eggplant (Solanum melongena L.): the Representative Solanum Species Indigenous to the Old World

inferredcites →https://doi.org/10.1093/dnares/dsx033openalex-snapshot

A re-sequencing-based ultra-dense genetic map reveals a gummy stem blight resistance-associated gene in Cucumis melo

inferredcites →https://doi.org/10.1093/emboj/cdf524openalex-snapshot

TRIPTYCHON and CAPRICE mediate lateral inhibition during trichome and root hair patterning in Arabidopsis

inferredcites →https://doi.org/10.1093/genetics/156.3.1349openalex-snapshot

GL3 Encodes a bHLH Protein That Regulates Trichome Development in Arabidopsis Through Interaction With GL1 and TTG1

inferredcites →https://doi.org/10.1093/genetics/161.4.1697openalex-snapshot

A Comparative Genetic Linkage Map of Eggplant (Solanum melongena) and Its Implications for Genome Evolution in the Solanaceae

inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

inferredcites →https://doi.org/10.1093/nar/gkz913openalex-snapshot

Database Resources of the National Genomics Data Center in 2020

inferredcites →https://doi.org/10.1093/pcp/pch016openalex-snapshot

A Simple and Efficient Method for Isolating Trichomes for Downstream Analyses

inferredcites →https://doi.org/10.1093/pcp/pcx196openalex-snapshot

LEAF LATERAL SYMMETRY1, a Member of the WUSCHEL-RELATED HOMEOBOX3 Gene Family, Regulates Lateral Organ Development Differentially from Other Paralogs, NARROW LEAF2 and NARROW LEAF3 in Rice

inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

inferredcites →https://doi.org/10.1105/tpc.11.7.1337openalex-snapshot

The TRANSPARENT TESTA GLABRA1 Locus, Which Regulates Trichome Differentiation and Anthocyanin Biosynthesis in Arabidopsis, Encodes a WD40 Repeat Protein

inferredcites →https://doi.org/10.1105/tpc.111.092858openalex-snapshot

Roles of the Middle Domain–Specific WUSCHEL-RELATED HOMEOBOX Genes in Early Development of Leaves in Arabidopsis

inferredcites →https://doi.org/10.1111/1755-0998.13321openalex-snapshot

A high‐quality genome assembly of the eggplant provides insights into the molecular basis of disease resistance and chlorogenic acid synthesis

inferredcites →https://doi.org/10.1111/jipb.12345openalex-snapshot

Micro‐trichome as a class I homeodomain‐leucine zipper gene regulates multicellular trichome development in Cucumis sativus

inferredcites →https://doi.org/10.1111/nph.12231openalex-snapshot

The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL ‐related homeobox 3 A ( O s WOX 3 A ) and function in leaf, spikelet, tiller and lateral root development

inferredcites →https://doi.org/10.1111/nph.14373openalex-snapshot

GLANDULAR TRICHOME ‐ SPECIFIC WRKY 1 promotes artemisinin biosynthesis in Artemisia annua

inferredcites →https://doi.org/10.1111/nph.15921openalex-snapshot

Control of leaf blade outgrowth and floral organ development by LEUNIG , ANGUSTIFOLIA 3 and WOX transcriptional regulators

inferredcites →https://doi.org/10.1111/tpj.12743openalex-snapshot

LOOSE FLOWER , a WUSCHEL ‐like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula

inferredcites →https://doi.org/10.1111/tpj.15313openalex-snapshot

Improved genome assembly and pan‐genome provide key insights into eggplant domestication and breeding

inferredcites →https://doi.org/10.1126/science.277.5329.1113openalex-snapshot

Epidermal Cell Differentiation in Arabidopsis Determined by a Myb Homolog, CPC

inferredcites →https://doi.org/10.1139/g10-073openalex-snapshot

Segregation distortion and linkage analysis in eggplant (Solanum melongenaL.)

inferredcites →https://doi.org/10.1186/1939-8433-5-28openalex-snapshot

A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes

inferredcites →https://doi.org/10.1186/1939-8433-5-30openalex-snapshot

A WUSCHEL-like homeobox gene, OsWOX3B responses to NUDA/GL-1 locus in rice

inferredcites →https://doi.org/10.1186/1939-8433-5-32openalex-snapshot

Glabrous Rice 1, encoding a homeodomain protein, regulates trichome development in rice

inferredcites →https://doi.org/10.1186/s12870-014-0350-zopenalex-snapshot

Location of chlorogenic acid biosynthesis pathway and polyphenol oxidase genes in a new interspecific anchored linkage map of eggplant

inferredcites →https://doi.org/10.1270/jsbbs.20004openalex-snapshot

Fine mapping of a major locus representing the lack of prickles in eggplant revealed the availability of a 0.5-kb insertion/deletion for marker-assisted selection

inferredcites →https://doi.org/10.1270/jsbbs.51.19openalex-snapshot

Mapping of Fruit Shape and Color Development Traits in Eggplant(Solanum melongena L.) Based on RAPD and AFLP Markers.

inferredcites →https://doi.org/10.1371/journal.pone.0043740openalex-snapshot

A RAD Tag Derived Marker Based Eggplant Linkage Map and the Location of QTLs Determining Anthocyanin Pigmentation

inferredcites →https://doi.org/10.1371/journal.pone.0089499openalex-snapshot

QTL Mapping in Eggplant Reveals Clusters of Yield-Related Loci and Orthology with the Tomato Genome

inferredcites →https://doi.org/10.1371/journal.pone.0098855openalex-snapshot

Construction and Analysis of High-Density Linkage Map Using High-Throughput Sequencing Data

inferredcites →https://doi.org/10.1371/journal.pone.0135200openalex-snapshot

Association Mapping for Fruit, Plant and Leaf Morphology Traits in Eggplant

inferredcites →https://doi.org/10.1371/journal.pone.0148422openalex-snapshot

A New Glabrous Gene (csgl3) Identified in Trichome Development in Cucumber (Cucumis sativus L.)

inferredcites →https://doi.org/10.3389/fpls.2014.00133openalex-snapshot

Regulation of cell fate determination by single-repeat R3 MYB transcription factors in Arabidopsis

inferredcites →https://doi.org/10.3389/fpls.2014.00259openalex-snapshot

An overview of the gene regulatory network controlling trichome development in the model plant, Arabidopsis

inferredcites →https://doi.org/10.3389/fpls.2016.00256openalex-snapshot

Mapping Quantitative Trait Loci Affecting Biochemical and Morphological Fruit Properties in Eggplant (Solanum melongena L.)

inferredcites →https://doi.org/10.3389/fpls.2016.01187openalex-snapshot

Trichome-Related Mutants Provide a New Perspective on Multicellular Trichome Initiation and Development in Cucumber (Cucumis sativus L)

inferredcites →https://doi.org/10.3390/genes12030341openalex-snapshot

Comparative Transcriptome Analysis Reveals Key Genes and Pathways Involved in Prickle Development in Eggplant

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/tax.12990zenodo-depositor-declared

Morphological trait evolution inSolanum(Solanaceae): Evolutionary lability of key taxonomic characters

inferred← citeshttps://doi.org/10.1002/tpg2.20295openalex-snapshot

Genome‐wide identification of HD‐ZIP gene family and screening of genes related to prickle development in Zanthoxylum armatum

inferred← citeshttps://doi.org/10.1007/978-3-031-80610-0_14openalex-snapshot

QTL Mapping for Drought Tolerance in Vegetables

inferred← citeshttps://doi.org/10.1007/978-981-95-2306-1_17openalex-snapshot

A Compendium of Advances on GWAS and QTL Atlas for Accelerating Trait Discovery in Eggplant

inferred← citeshttps://doi.org/10.1007/s00122-024-04726-6openalex-snapshot

Map-based cloning of LPD, a major gene positively regulates leaf prickle development in eggplant

inferred← citeshttps://doi.org/10.1007/s44372-026-00850-3openalex-snapshot

Genetic and biotechnological advances in eggplant improvement for food security

inferred← citeshttps://doi.org/10.1016/j.indcrop.2026.122899openalex-snapshot

Integrated metabolomic and transcriptomic analysis to uncover the developmental mechanism of Zanthoxylum armatum prickles

inferred← citeshttps://doi.org/10.1016/j.scienta.2024.112874openalex-snapshot

Fine mapping an AUXIN RESPONSE FACTOR, SmARF18, as a candidate gene of the PRICKLE LOCUS that controls prickle absence/presence on various organs in eggplant (Solanum melongena L.)

inferred← citeshttps://doi.org/10.1093/hr/uhae134openalex-snapshot

PE (Prickly Eggplant) encoding a cytokinin-activating enzyme responsible for the formation of prickles in eggplant

inferred← citeshttps://doi.org/10.1093/plphys/kiag551openalex-snapshot

The control of prickle formation in Rubus

inferred← citeshttps://doi.org/10.1186/s12870-025-07242-xopenalex-snapshot

Benchmarking of low coverage sequencing workflows for precision genotyping in eggplant

inferred← citeshttps://doi.org/10.18280/ijdne.180215openalex-snapshot

Quality of Untraded Rattan Stem from Central Sulawesi (Indonesia) Based on the Morphology

inferred← citeshttps://doi.org/10.21203/rs.3.rs-1769020/v1openalex-snapshot

Fine mapping a single nucleotide transversion in AUXIN RESPONSE FACTOR 18 controls prickle absence/presence on various organs in eggplant (Solanum melongena L.)

inferred← citeshttps://doi.org/10.3389/fgene.2022.841198openalex-snapshot

Identifying Quantitative Trait Loci for Thousand Grain Weight in Eggplant by Genome Re-Sequencing Analysis

inferred← citeshttps://doi.org/10.3390/horticulturae10121371openalex-snapshot

Genome-Wide Analysis of C2H2 Zinc Finger Gene Family and Exploration of Genes Related to Prickle Development in Zanthoxylum armatum

inferred← citeshttps://doi.org/10.3390/ijms231810258openalex-snapshot

Construction of a High-Density Recombination Bin-Based Genetic Map Facilitates High-Resolution Mapping of a Major QTL Underlying Anthocyanin Pigmentation in Eggplant

inferred← citeshttps://doi.org/10.3390/plants11192627openalex-snapshot

Genome-Wide Association Study for Agro-Morphological Traits in Eggplant Core Collection

inferred← citeshttps://doi.org/10.3390/plants12051016openalex-snapshot

A Compendium for Novel Marker-Based Breeding Strategies in Eggplant

inferred← citeshttps://doi.org/10.48130/fr-2022-0011openalex-snapshot

Current status and trends in forest genomics

inferred← citeshttps://doi.org/10.4995/thesis/10251/207347openalex-snapshot

Development and exploitation of MAGIC experimental populations in eggplant and tomato genetics and breeding

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