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Comparative Transcriptome Analysis Reveals Key Genes and Pathways Involved in Prickle Development in Eggplant

https://doi.org/10.3390/genes12030341
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/meth.2001.1262openalex-snapshot
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
inferredcites →https://doi.org/10.1007/s10681-013-1060-6openalex-snapshot
QTL hotspots in eggplant (Solanum melongena) detected with a high resolution map and CIM analysis
inferredcites →https://doi.org/10.1007/s11103-004-6768-1openalex-snapshot
Two WD-repeat genes from cotton are functional homologues of the Arabidopsis thaliana TRANSPARENT TESTA GLABRA1 (TTG1) gene
inferredcites →https://doi.org/10.1016/j.plaphy.2013.02.001openalex-snapshot
The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity
inferredcites →https://doi.org/10.1016/j.tplants.2006.04.008openalex-snapshot
Trichomes: different regulatory networks lead to convergent structures
inferredcites →https://doi.org/10.1016/j.tplants.2019.12.025openalex-snapshot
Genetic Control of Glandular Trichome Development
inferredcites →https://doi.org/10.1016/s0960-9822(02)01164-8openalex-snapshot
Microtubules and Microfilaments in Cell Morphogenesis in Higher Plants
inferredcites →https://doi.org/10.1016/s1360-1385(00)01792-1openalex-snapshot
The role of the cytoskeleton and a molecular motor in trichome morphogenesis
inferredcites →https://doi.org/10.1038/ncomms6519openalex-snapshot
Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1038/s41438-020-00391-0openalex-snapshot
A high-quality chromosome-level genome assembly reveals genetics for important traits in eggplant
inferredcites →https://doi.org/10.1038/s41438-020-0314-4openalex-snapshot
Genome-wide analysis of expression quantitative trait loci (eQTLs) reveals the regulatory architecture of gene expression variation in the storage roots of sweet potato
inferredcites →https://doi.org/10.1038/s41467-017-02445-9openalex-snapshot
RNA sequencing provides insights into the evolution of lettuce and the regulation of flavonoid biosynthesis
inferredcites →https://doi.org/10.1038/s41598-018-35304-8openalex-snapshot
Transcriptome analysis provides insight into prickle development and its link to defense and secondary metabolism in Solanum viarum Dunal
inferredcites →https://doi.org/10.1073/pnas.1000672107openalex-snapshot
Auxin regulates distal stem cell differentiation in Arabidopsis roots
inferredcites →https://doi.org/10.1073/pnas.1100532108openalex-snapshot
A regulatory gene induces trichome formation and embryo lethality in tomato
inferredcites →https://doi.org/10.1089/omi.2011.0118openalex-snapshot
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
inferredcites →https://doi.org/10.1091/mbc.e04-05-0400openalex-snapshot
An Internal Motor Kinesin Is Associated with the Golgi Apparatus and Plays a Role in Trichome Morphogenesis in Arabidopsis
inferredcites →https://doi.org/10.1093/aob/mcz189openalex-snapshot
Defence emergence during early ontogeny reveals important differences between spines, thorns and prickles
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-snapshot
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/genetics/156.3.1349openalex-snapshot
GL3 Encodes a bHLH Protein That Regulates Trichome Development in Arabidopsis Through Interaction With GL1 and TTG1
inferredcites →https://doi.org/10.1093/genetics/161.4.1713openalex-snapshot
Conservation of Gene Function in the Solanaceae as Revealed by Comparative Mapping of Domestication Traits in Eggplant
inferredcites →https://doi.org/10.1093/jxb/erv533openalex-snapshot
Secondary cell walls: biosynthesis and manipulation
inferredcites →https://doi.org/10.1093/molbev/msx148openalex-snapshot
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
inferredcites →https://doi.org/10.1093/molbev/msz062openalex-snapshot
Eggplant Domestication: Pervasive Gene Flow, Feralization, and Transcriptomic Divergence
inferredcites →https://doi.org/10.1093/mp/ssu018openalex-snapshot
Cell Wall, Cytoskeleton, and Cell Expansion in Higher Plants
inferredcites →https://doi.org/10.1093/nar/gkm306openalex-snapshot
Primer3Plus, an enhanced web interface to Primer3
inferredcites →https://doi.org/10.1093/pcp/pcu140openalex-snapshot
Secondary Cell Walls: Biosynthesis, Patterned Deposition and Transcriptional Regulation
inferredcites →https://doi.org/10.1101/cshperspect.a010140openalex-snapshot
Regulating DNA Replication in Plants
inferredcites →https://doi.org/10.1104/pp.113.217265openalex-snapshot
Rice Cytokinin GATA Transcription Factor1 Regulates Chloroplast Development and Plant Architecture
inferredcites →https://doi.org/10.1104/pp.15.00112openalex-snapshot
Cell Wall Maturation of Arabidopsis Trichomes Is Dependent on Exocyst Subunit EXO70H4 and Involves Callose Deposition
inferredcites →https://doi.org/10.1105/tpc.104.024844openalex-snapshot
Control of Plant Trichome Development by a Cotton Fiber MYB Gene[W]
inferredcites →https://doi.org/10.1105/tpc.110.082503openalex-snapshot
GUN4-Porphyrin Complexes Bind the ChlH/GUN5 Subunit of Mg-Chelatase and Promote Chlorophyll Biosynthesis inArabidopsis
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03616.xopenalex-snapshot
GLK transcription factors regulate chloroplast development in a cell‐autonomous manner
inferredcites →https://doi.org/10.1111/j.1399-3054.2008.01115.xopenalex-snapshot
The HD‐Zip IV gene GaHOX1 from cotton is a functional homologue of the Arabidopsis GLABRA2
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/jipb.12072openalex-snapshot
Identification and Characterization of Cotton Genes Involved in Fuzz‐ F iber Development
inferredcites →https://doi.org/10.1111/pbi.13167openalex-snapshot
Updates on molecular mechanisms in the development of branched trichome in Arabidopsis and nonbranched in cotton
inferredcites →https://doi.org/10.1111/tpj.14018openalex-snapshot
Hair, encoding a single C2H2 zinc‐finger protein, regulates multicellular trichome formation in tomato
inferredcites →https://doi.org/10.1139/b11-008openalex-snapshot
Morphological studies of developingRubusprickles suggest that they are modified glandular trichomes
inferredcites →https://doi.org/10.1186/1756-0500-6-312openalex-snapshot
Selection and validation of reference genes for quantitative gene expression studies by real-time PCR in eggplant (Solanum melongena L)
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1242/dev.005017openalex-snapshot
Integration of cytokinin and gibberellin signalling byArabidopsistranscription factors GIS, ZFP8 and GIS2 in the regulation of epidermal cell fate
inferredcites →https://doi.org/10.1270/jsbbs.20004openalex-snapshot
Fine mapping of a major locus representing the lack of prickles in eggplant revealed the availability of a 0.5-kb insertion/deletion for marker-assisted selection
inferredcites →https://doi.org/10.1371/journal.pone.0089499openalex-snapshot
QTL Mapping in Eggplant Reveals Clusters of Yield-Related Loci and Orthology with the Tomato Genome
inferredcites →https://doi.org/10.1371/journal.pone.0135200openalex-snapshot
Association Mapping for Fruit, Plant and Leaf Morphology Traits in Eggplant
inferredcites →https://doi.org/10.1590/1678-4685-gmb-2016-0118openalex-snapshot
The plant cell cycle: Pre-Replication complex formation and controls
inferredcites →https://doi.org/10.21273/hortsci14815-20openalex-snapshot
Morphological Characterization of Prickled and Prickle-free Rubus Using Scanning Electron Microscopy
inferredcites →https://doi.org/10.3389/fpls.2016.01187openalex-snapshot
Trichome-Related Mutants Provide a New Perspective on Multicellular Trichome Initiation and Development in Cucumber (Cucumis sativus L)
inferredcites →https://doi.org/10.3390/agronomy10040467openalex-snapshot
Performance of a Set of Eggplant (Solanum melongena) Lines With Introgressions From Its Wild Relative S. incanum Under Open Field and Screenhouse Conditions and Detection of QTLs
inferredcites →https://doi.org/10.3390/agronomy10121904openalex-snapshot
RNA-Seq Analysis of Prickled and Prickle-Free Epidermis Provides Insight into the Genetics of Prickle Development in Red Raspberry (Rubus ideaus L.)
inferredcites →https://doi.org/10.4161/psb.6.12.18120openalex-snapshot
Progress on trichome development regulated by phytohormone signaling

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/tax.12990zenodo-depositor-declared
Morphological trait evolution inSolanum(Solanaceae): Evolutionary lability of key taxonomic characters
inferred← citeshttps://doi.org/10.1007/s00122-024-04726-6openalex-snapshot
Map-based cloning of LPD, a major gene positively regulates leaf prickle development in eggplant
inferred← citeshttps://doi.org/10.1007/s00344-025-11923-0openalex-snapshot
Mechanism of Specific Inhibition of Thorn Formation by Salicylic Acid in Lycium ruthenicum
inferred← citeshttps://doi.org/10.1007/s11033-024-09412-wopenalex-snapshot
Characterization and expression analysis of GLABRA3 (GL3) genes in cotton: insights into trichome development and hormonal regulation
inferred← citeshttps://doi.org/10.1007/s11103-025-01657-8openalex-snapshot
Exploring LOG genes: drivers of prickle evolution in the plant kingdom
inferred← citeshttps://doi.org/10.1016/j.gene.2023.147434openalex-snapshot
Comparative transcriptome analysis reveals hormone, transcriptional and epigenetic regulation involved in prickle formation in Zanthoxylum armatum
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e27222openalex-snapshot
Transcriptome analysis reveals key genes and pathways for prickle development in Zanthoxylum armatum
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.145515openalex-snapshot
Transcriptome analysis reveals insights into regulatory networks of prickle formation in Rosa multiflora and the role of RmNAC43 in lignin biosynthesis during prickle hardening
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2026.154252openalex-snapshot
A NAC transcription factor in Rosa multiflora regulates lignin accumulation by interacting with RmBZR1 during prickle hardening
inferred← citeshttps://doi.org/10.1016/j.indcrop.2024.120330openalex-snapshot
Identifying microRNAs and their downstream transcriptional regulatory network during prickle development in Rubus spp
inferred← citeshttps://doi.org/10.1016/j.plantsci.2024.112010openalex-snapshot
A review of the types, functions and regulatory mechanisms of plant spines
inferred← citeshttps://doi.org/10.1016/j.plaphy.2023.107813openalex-snapshot
A NAC transcription factor ZaNAC93 confers floral initiation, fruit development, and prickle formation in Zanthoxylum armatum
inferred← citeshttps://doi.org/10.1016/j.scienta.2023.112763openalex-snapshot
Morphology, structure and development of glandular prickles in the genus Rosa
inferred← citeshttps://doi.org/10.1016/j.scienta.2024.112874openalex-snapshot
Fine mapping an AUXIN RESPONSE FACTOR, SmARF18, as a candidate gene of the PRICKLE LOCUS that controls prickle absence/presence on various organs in eggplant (Solanum melongena L.)
inferred← citeshttps://doi.org/10.1016/j.tplants.2024.09.016openalex-snapshot
The genetic basis of prickle loss in the Solanaceae
inferred← citeshttps://doi.org/10.1016/j.ygeno.2025.111004openalex-snapshot
Chromosome-level de novo genome unveils the evolution of Gleditsia sinensis and thorns development
inferred← citeshttps://doi.org/10.1093/hr/uhae134openalex-snapshot
PE (Prickly Eggplant) encoding a cytokinin-activating enzyme responsible for the formation of prickles in eggplant
inferred← citeshttps://doi.org/10.1111/ppl.13510openalex-snapshot
Nonglandular prickle formation is associated with development and secondary metabolism‐related genes in Rosa multiflora
inferred← citeshttps://doi.org/10.1111/tpj.15313openalex-snapshot
Improved genome assembly and pan‐genome provide key insights into eggplant domestication and breeding
inferred← citeshttps://doi.org/10.1186/s12870-026-08117-5openalex-snapshot
Integrated transcriptomic and metabolomic analysis reveals the regulatory role of lignin biosynthesis in raspberry (Rubus niveus) prickle development
inferred← citeshttps://doi.org/10.1186/s43897-025-00167-xopenalex-snapshot
The role, regulation and application of plant fruit trichomes
inferred← citeshttps://doi.org/10.12657/denbio.087.003openalex-snapshot
Global transcriptome analysis reveals genes associated with seedling advance growth traits in a selfed family of Chinese fir (Cunninghamia lanceolata)
inferred← citeshttps://doi.org/10.15376/biores.17.4.6377-6396openalex-snapshot
Transcriptome analysis reveals the molecular patterns regulating prickle reduction in grafted Zanthoxylum armatum
inferred← citeshttps://doi.org/10.20944/preprints202112.0338.v1openalex-snapshot
Designing Climate-Smart Brinjal That Can Withstand a Variety of Environmental Conditions: A Perspective
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1769020/v1openalex-snapshot
Fine mapping a single nucleotide transversion in AUXIN RESPONSE FACTOR 18 controls prickle absence/presence on various organs in eggplant (Solanum melongena L.)
inferred← citeshttps://doi.org/10.3389/fpls.2021.731079openalex-snapshot
Identification of Quantitative Trait Loci Controlling the Development of Prickles in Eggplant by Genome Re-sequencing Analysis
inferred← citeshttps://doi.org/10.3389/fpls.2022.939270openalex-snapshot
RrTTG1 promotes fruit prickle development through an MBW complex in Rosa roxburghii
inferred← citeshttps://doi.org/10.3389/fpls.2024.1356750openalex-snapshot
Genetic dissection of stem and leaf rachis prickles in diploid rose using a pedigree-based QTL analysis
inferred← citeshttps://doi.org/10.3390/agronomy11091770openalex-snapshot
Evaluation of Advanced Backcrosses of Eggplant with Solanum elaeagnifolium Introgressions under Low N Conditions
inferred← citeshttps://doi.org/10.3390/plants12051016openalex-snapshot
A Compendium for Novel Marker-Based Breeding Strategies in Eggplant
inferred← citeshttps://doi.org/10.3390/plants12071456openalex-snapshot
Comparative Transcriptome Analysis of Gleditsia sinensis Thorns at Different Stages of Development
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