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RNA Profiling of Mouse Ependymal Cells after Spinal Cord Injury Identifies the Oncostatin Pathway as a Potential Key Regulator of Spinal Cord Stem Cell Fate

https://doi.org/10.3390/cells10123332
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Role of Endogenous Neural Stem Cells in Spinal Cord Injury and Repair
inferredcites →https://doi.org/10.1002/cne.23104openalex-snapshot
Biciliated ependymal cell proliferation contributes to spinal cord growth
inferredcites →https://doi.org/10.1002/dneu.20871openalex-snapshot
Oncostatin M regulates neural precursor activity in the adult brain
inferredcites →https://doi.org/10.1002/glia.21077openalex-snapshot
Prospectively isolated CD133/CD24‐positive ependymal cells from the adult spinal cord and lateral ventricle wall differ in their long‐term in vitro self‐renewal and in vivo gene expression
inferredcites →https://doi.org/10.1002/glia.23240openalex-snapshot
Cellular and molecular characterization of IDH1‐mutated diffuse low grade gliomas reveals tumor heterogeneity and absence of EGFR/PDGFRα activation
inferredcites →https://doi.org/10.1002/jnr.20561openalex-snapshot
Suppression of Stat3 promotes neurogenesis in cultured neural stem cells
inferredcites →https://doi.org/10.1002/stem.226openalex-snapshot
A Mesenchymal-Like ZEB1+ Niche Harbors Dorsal Radial Glial Fibrillary Acidic Protein-Positive Stem Cells in the Spinal Cord
inferredcites →https://doi.org/10.1002/stem.3344openalex-snapshot
Niche-dependent inhibition of neural stem cell proliferation and oligodendrogenesis is mediated by the presence of myelin basic protein
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Leukemia Inhibitory Factor Is Expressed in Astrocytes Following Cortical Brain Injury
inferredcites →https://doi.org/10.1007/978-1-0716-1783-0_4openalex-snapshot
Isolate and Culture Neural Stem Cells from the Mouse Adult Spinal Cord
inferredcites →https://doi.org/10.1007/978-1-62703-574-3_5openalex-snapshot
Isolate and Culture Neural Stem Cells from the Mouse Adult Spinal Cord
inferredcites →https://doi.org/10.1007/978-3-319-69194-7_5openalex-snapshot
Spinal Cord Stem Cells In Their Microenvironment: The Ependyma as a Stem Cell Niche
inferredcites →https://doi.org/10.1007/s00018-013-1302-8openalex-snapshot
Cell cycle progression by the repression of primary cilia formation in proliferating cells
inferredcites →https://doi.org/10.1007/s00018-016-2369-9openalex-snapshot
Mechanisms of ciliogenesis suppression in dividing cells
inferredcites →https://doi.org/10.1007/s11064-015-1590-5openalex-snapshot
Insights into Enzyme Catalysis and Thyroid Hormone Regulation of Cerebral Ketimine Reductase/μ-Crystallin Under Physiological Conditions
inferredcites →https://doi.org/10.1007/s12035-014-8795-5openalex-snapshot
Oncostatin M Reduces Lesion Size and Promotes Functional Recovery and Neurite Outgrowth After Spinal Cord Injury
inferredcites →https://doi.org/10.1016/0165-5728(90)90073-vopenalex-snapshot
Immortalization of murine microglial cells by a v-raf / v-myc carrying retrovirus
inferredcites →https://doi.org/10.1016/j.celrep.2021.109656openalex-snapshot
Cilium induction triggers differentiation of glioma stem cells
inferredcites →https://doi.org/10.1016/j.cmet.2013.07.012openalex-snapshot
Stat3 Activation Links a C/EBPδ to Myostatin Pathway to Stimulate Loss of Muscle Mass
inferredcites →https://doi.org/10.1016/j.compbiomed.2011.12.012openalex-snapshot
BootstRatio: A web-based statistical analysis of fold-change in qPCR and RT-qPCR data using resampling methods
inferredcites →https://doi.org/10.1016/j.expneurol.2013.01.026openalex-snapshot
Neural stem cells in the adult spinal cord
inferredcites →https://doi.org/10.1016/j.neuron.2012.08.031openalex-snapshot
MEK Is a Key Regulator of Gliogenesis in the Developing Brain
inferredcites →https://doi.org/10.1016/j.neuroscience.2009.09.006openalex-snapshot
Cellular organization of the central canal ependymal zone, a niche of latent neural stem cells in the adult mammalian spinal cord
inferredcites →https://doi.org/10.1016/j.pneurobio.2018.04.002openalex-snapshot
The spinal ependymal zone as a source of endogenous repair cells across vertebrates
inferredcites →https://doi.org/10.1016/j.semcdb.2020.04.007openalex-snapshot
Transcriptional regulation of multiciliated cell differentiation
inferredcites →https://doi.org/10.1016/j.stem.2010.07.014openalex-snapshot
Origin of New Glial Cells in Intact and Injured Adult Spinal Cord
inferredcites →https://doi.org/10.1016/j.stemcr.2019.04.001openalex-snapshot
RNA Profiling of the Human and Mouse Spinal Cord Stem Cell Niches Reveals an Embryonic-like Regionalization with MSX1+ Roof-Plate-Derived Cells
inferredcites →https://doi.org/10.1016/j.tcb.2013.08.004openalex-snapshot
Neuroinflammation and central nervous system regeneration in vertebrates
inferredcites →https://doi.org/10.1016/j.yexcr.2017.06.002openalex-snapshot
An ex vivo spinal cord injury model to study ependymal cells in adult mouse tissue
inferredcites →https://doi.org/10.1016/s0014-5793(97)00313-xopenalex-snapshot
‘Green mice’ as a source of ubiquitous green cells
inferredcites →https://doi.org/10.1016/s0197-0186(98)00023-0openalex-snapshot
Invited review c-Fos as a transcription factor: a stressful (re)view from a functional map
inferredcites →https://doi.org/10.1016/s0304-3940(99)00447-4openalex-snapshot
STAT3-mediated astrocyte differentiation from mouse fetal neuroepithelial cells by mouse oncostatin M
inferredcites →https://doi.org/10.1016/s0306-4522(03)00240-9openalex-snapshot
Localization of oncostatin M receptor β in adult and developing CNS
inferredcites →https://doi.org/10.1038/nn.3599openalex-snapshot
Identification of a unique TGF-β–dependent molecular and functional signature in microglia
inferredcites →https://doi.org/10.1038/nn0504-483openalex-snapshot
Gene Expression Nervous System Atlas (GENSAT)
inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
inferredcites →https://doi.org/10.1038/s41467-018-03812-wopenalex-snapshot
Uncovering inherent cellular plasticity of multiciliated ependyma leading to ventricular wall transformation and hydrocephalus
inferredcites →https://doi.org/10.1038/srep26547openalex-snapshot
Cell type-dependent Erk-Akt pathway crosstalk regulates the proliferation of fetal neural progenitor cells
inferredcites →https://doi.org/10.1038/srep41122openalex-snapshot
Ependymal cell contribution to scar formation after spinal cord injury is minimal, local and dependent on direct ependymal injury
inferredcites →https://doi.org/10.1073/pnas.1801196115openalex-snapshot
Extracellular matrix protein 1 promotes follicular helper T cell differentiation and antibody production
inferredcites →https://doi.org/10.1074/jbc.m113.475277openalex-snapshot
Epithelial to Mesenchymal Transition Promotes Breast Cancer Progression via a Fibronectin-dependent STAT3 Signaling Pathway
inferredcites →https://doi.org/10.1074/jbc.m511212200openalex-snapshot
Oncostatin M Receptor-mediated Signal Transduction Is Negatively Regulated by SOCS3 through a Receptor Tyrosine-independent Mechanism
inferredcites →https://doi.org/10.1074/jbc.m807108200openalex-snapshot
Structure and Regulation of the Versican Promoter
inferredcites →https://doi.org/10.1080/07357900701788148openalex-snapshot
The Extracellular Matrix Protein 1: Its Molecular Interaction and Implication in Tumor Progression
inferredcites →https://doi.org/10.1084/jem.20210040openalex-snapshot
Single-cell analysis of the cellular heterogeneity and interactions in the injured mouse spinal cord
inferredcites →https://doi.org/10.1093/bioinformatics/btt703openalex-snapshot
Causal analysis approaches in Ingenuity Pathway Analysis
inferredcites →https://doi.org/10.1093/brain/awv089openalex-snapshot
The ependymal region of the adult human spinal cord differs from other species and shows ependymoma-like features
inferredcites →https://doi.org/10.1093/nar/gkaa625openalex-snapshot
Interplay of RFX transcription factors 1, 2 and 3 in motile ciliogenesis
inferredcites →https://doi.org/10.1096/fj.08-105908openalex-snapshot
Ramified microglial cells promote astrogliogenesis and maintenance of neural stem cells through activation of Stat3 function
inferredcites →https://doi.org/10.1097/00005072-196210000-00007openalex-snapshot
INCORPORATION OF THYMIDINE-H3 BY CELLS IN NORMAL AND INJURED MOUSE SPINAL CORD
inferredcites →https://doi.org/10.1097/00005373-199503000-00004openalex-snapshot
Changing Profiles in Spinal Cord Injuries and Risk Factors Influencing Recovery after Penetrating Injuries
inferredcites →https://doi.org/10.1101/gad.12.13.2048openalex-snapshot
Self-renewal of pluripotent embryonic stem cells is mediated via activation of STAT3
inferredcites →https://doi.org/10.1111/j.1447-073x.2005.00100.xopenalex-snapshot
Oncostatin M in the development of the nervous system
inferredcites →https://doi.org/10.1111/j.1460-9568.2007.05309.xopenalex-snapshot
Microglia‐derived interleukin‐6 and leukaemia inhibitory factor promote astrocytic differentiation of neural stem/progenitor cells
inferredcites →https://doi.org/10.1111/j.1471-4159.2011.07610.xopenalex-snapshot
STAT3 signaling after traumatic brain injury
inferredcites →https://doi.org/10.1126/science.1242576openalex-snapshot
Resident Neural Stem Cells Restrict Tissue Damage and Neuronal Loss After Spinal Cord Injury in Mice
inferredcites →https://doi.org/10.1126/science.abb8795openalex-snapshot
A latent lineage potential in resident neural stem cells enables spinal cord repair
inferredcites →https://doi.org/10.1128/mcb.20.11.4106-4114.2000openalex-snapshot
Analysis of Fractalkine Receptor CX3CR1 Function by Targeted Deletion and Green Fluorescent Protein Reporter Gene Insertion
inferredcites →https://doi.org/10.1159/000184774openalex-snapshot
Extra- and Intracellular Transport of Retinoids: A Reappraisal
inferredcites →https://doi.org/10.1186/s12974-018-1195-4openalex-snapshot
RNA sequencing analysis reveals quiescent microglia isolation methods from postnatal mouse brains and limitations of BV2 cells
inferredcites →https://doi.org/10.1242/dev.044529openalex-snapshot
Netrins: versatile extracellular cues with diverse functions
inferredcites →https://doi.org/10.1242/jcs.233338openalex-snapshot
Tissue-specific roles of p73 in development and homeostasis
inferredcites →https://doi.org/10.1310/sci1901-1openalex-snapshot
Causes of Spinal Cord Injury
inferredcites →https://doi.org/10.1371/journal.pbio.0060182openalex-snapshot
Spinal Cord Injury Reveals Multilineage Differentiation of Ependymal Cells
inferredcites →https://doi.org/10.1371/journal.pone.0072567openalex-snapshot
RNA-Seq Characterization of Spinal Cord Injury Transcriptome in Acute/Subacute Phases: A Resource for Understanding the Pathology at the Systems Level
inferredcites →https://doi.org/10.1371/journal.pone.0100405openalex-snapshot
STAT3 Modulation to Enhance Motor Neuron Differentiation in Human Neural Stem Cells
inferredcites →https://doi.org/10.1385/criai:28:3:249openalex-snapshot
Role of IL-6 in the Neural Stem Cell Differentiation
inferredcites →https://doi.org/10.14573/altex.2009.2.83openalex-snapshot
The suitability of BV2 cells as alternative model system for primary microglia cultures or for animal experiments examining brain inflammation
inferredcites →https://doi.org/10.1523/jneurosci.20-23-08727.2000openalex-snapshot
Adult Spinal Cord Stem Cells Generate Neurons after Transplantation in the Adult Dentate Gyrus
inferredcites →https://doi.org/10.2174/156800908785133196openalex-snapshot
NUPR1 Interacts with p53, Transcriptionally Regulates p21 and Rescues Breast Epithelial Cells from Doxorubicin-Induced Genotoxic Stress
inferredcites →https://doi.org/10.3109/10520296209114562openalex-snapshot
Staining Tissue of the Central Nervous System with Luxol Fast Blue and Neutral Red
inferredcites →https://doi.org/10.3389/fncel.2018.00242openalex-snapshot
An Overview of in vitro Methods to Study Microglia
inferredcites →https://doi.org/10.3389/fncel.2018.00268openalex-snapshot
Interactions Between Neural Progenitor Cells and Microglia in the Subventricular Zone: Physiological Implications in the Neurogenic Niche and After Implantation in the Injured Brain
inferredcites →https://doi.org/10.3389/fncel.2021.703951openalex-snapshot
Single Cell Transcriptomics of Ependymal Cells Across Age, Region and Species Reveals Cilia-Related and Metal Ion Regulatory Roles as Major Conserved Ependymal Cell Functions
inferredcites →https://doi.org/10.3892/etm.2021.10143openalex-snapshot
Targeted inhibition of STAT3 in neural stem cells promotes neuronal differentiation and functional recovery in rats with spinal cord injury
inferredcites →https://doi.org/10.3892/ol.2019.9942openalex-snapshot
Primary cilia and their role in cancer (Review)
inferredcites →https://doi.org/10.4049/jimmunol.1102762openalex-snapshot
Prostaglandin E2 Induces Oncostatin M Expression in Human Chronic Wound Macrophages through Axl Receptor Tyrosine Kinase Pathway
inferredcites →https://doi.org/10.4049/jimmunol.176.10.5863openalex-snapshot
Increased Expression of Ifi202 , an IFN-Activatable Gene, in B6.Nba2 Lupus Susceptible Mice Inhibits p53-Mediated Apoptosis
inferredcites →https://doi.org/10.7150/ijbs.7224openalex-snapshot
The Many Faces of C/EBPδ and their Relevance for Inflammation and Cancer

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4693677openalex-extracted
Ezrin, a novel marker of ependymal cells, can be used to demonstrate their proliferation regulation after spinal cord injury in mice
inferred← citeshttps://doi.org/10.1002/glia.70139openalex-snapshot
Glia Are Bussin’: How Single‐Cell and Spatial Transcriptomics Enlighten the Role of Neuroglia in Spinal Cord Injury and Regeneration
inferred← citeshttps://doi.org/10.1007/s10522-022-10004-zopenalex-snapshot
Aging-accelerated differential production and aggregation of STAT3 protein in neuronal cells and neural stem cells in the male mouse spinal cord
inferred← citeshttps://doi.org/10.1007/s10528-025-11160-wopenalex-snapshot
Neuroprotective Role of THBS2 in Experimental Spinal Cord Injury Via its Anti-neuroinflammatory and Anti-apoptotic Properties
inferred← citeshttps://doi.org/10.1016/bs.irn.2024.04.005openalex-snapshot
The role of glial cells in amyotrophic lateral sclerosis
inferred← citeshttps://doi.org/10.1016/j.devcel.2023.01.003openalex-snapshot
An ependymal cell census identifies heterogeneous and ongoing cell maturation in the adult mouse spinal cord that changes dynamically on injury
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.149420openalex-snapshot
Differential therapeutic implications of the OSM-OSMR signaling pathway in cancer and inflammatory diseases
inferred← citeshttps://doi.org/10.1016/j.nbd.2024.106746openalex-snapshot
Ezrin, a novel marker of ependymal cells, can be used to demonstrate their proliferation regulation after spinal cord injury in mice
inferred← citeshttps://doi.org/10.1016/j.stemcr.2025.102574openalex-snapshot
Ependymal and neural stem cells are close relatives
inferred← citeshttps://doi.org/10.1038/s41593-025-02044-8openalex-snapshot
Augmenting AMPA receptor signaling after spinal cord injury increases ependymal-derived neural stem/progenitor cell migration and promotes functional recovery
inferred← citeshttps://doi.org/10.1101/2022.03.07.483249openalex-snapshot
Ependymal cell maturation is heterogeneous and ongoing in the mouse spinal cord and dynamically regulated in response to injury
inferred← citeshttps://doi.org/10.1101/2023.03.29.534787openalex-snapshot
In Rhesus monkeys, CSF-contacting neurons are the only neurons present in the medullo-spinal peri-ependymal zone
inferred← citeshttps://doi.org/10.1101/2024.01.30.578030openalex-snapshot
A spinal cord injury time and severity consensus transcriptomic reference suite in rat reveals translationally-relevant biomarker genes
inferred← citeshttps://doi.org/10.1101/2024.02.29.582659openalex-snapshot
Secondary microglia formation center in the human fetal brain
inferred← citeshttps://doi.org/10.1101/2025.10.01.677488openalex-snapshot
Hippo/YAP1 Signaling Regulates the Oligodendrocyte–Astrocyte Fate Switch and Ependymal Gene Expression in Adult Spinal Cord Stem Cells
inferred← citeshttps://doi.org/10.1111/jnc.16120openalex-snapshot
Ependymal cells undergo astrocyte‐like reactivity in response to neuroinflammation
inferred← citeshttps://doi.org/10.1186/s12915-024-02085-8openalex-snapshot
Accurate RNA velocity estimation based on multibatch network reveals complex lineage in batch scRNA-seq data
inferred← citeshttps://doi.org/10.1186/s12967-024-06009-6openalex-snapshot
A comprehensive transcriptional reference for severity and progression in spinal cord injury reveals novel translational biomarker genes
inferred← citeshttps://doi.org/10.1186/s12967-025-06915-3openalex-snapshot
Interplay of axon regeneration genes and immune infiltration in spinal cord injury
inferred← citeshttps://doi.org/10.1186/s12974-024-03240-2openalex-snapshot
Ependymal cells: roles in central nervous system infections and therapeutic application
inferred← citeshttps://doi.org/10.1186/s13059-024-03339-yopenalex-snapshot
aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
inferred← citeshttps://doi.org/10.1186/s13287-023-03395-4openalex-snapshot
The activation of dormant ependymal cells following spinal cord injury
inferred← citeshttps://doi.org/10.21203/rs.3.rs-4358401/v1openalex-snapshot
Meta-SCI app: a comprehensive transcriptional reference for understanding the severity and progression of spinal cord injury
inferred← citeshttps://doi.org/10.3390/biom13050754openalex-snapshot
Ependyma in Neurodegenerative Diseases, Radiation-Induced Brain Injury and as a Therapeutic Target for Neurotrophic Factors
inferred← citeshttps://doi.org/10.3390/cells11050846openalex-snapshot
Regulating Endogenous Neural Stem Cell Activation to Promote Spinal Cord Injury Repair
inferred← citeshttps://doi.org/10.3390/cells14141065openalex-snapshot
Temporal and Severity-Dependent Alterations in Plasma Extracellular Vesicle Profiles Following Spinal Cord Injury
inferred← citeshttps://doi.org/10.6084/m9.figshare.26461839openalex-snapshot
Additional file 1 of aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
inferred← citeshttps://doi.org/10.6084/m9.figshare.26461890openalex-snapshot
Additional file 2 of aKNNO: single-cell and spatial transcriptomics clustering with an optimized adaptive k-nearest neighbor graph
inferred← citeshttps://doi.org/10.7150/thno.70929openalex-snapshot
Grafted human ESC-derived astroglia repair spinal cord injury via activation of host anti-inflammatory microglia in the lesion area
inferred← citeshttps://doi.org/10.7150/thno.84133openalex-snapshot
Recent advances in endogenous neural stem/progenitor cell manipulation for spinal cord injury repair
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