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Cerebral Organoids as an Experimental Platform for Human Neurogenomics

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Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis

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Self-Organization of Polarized Cerebellar Tissue in 3D Culture of Human Pluripotent Stem Cells

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Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain

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Self-Organized Cerebral Organoids with Human-Specific Features Predict Effective Drugs to Combat Zika Virus Infection

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CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories

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Mechanisms of brain evolution: Regulation of neural progenitor cell diversity and cell cycle length

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Satb2 Is a Postmitotic Determinant for Upper-Layer Neuron Specification in the Neocortex

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Microglia Sculpt Postnatal Neural Circuits in an Activity and Complement-Dependent Manner

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Pyramidal Neurons Derived from Human Pluripotent Stem Cells Integrate Efficiently into Mouse Brain Circuits In Vivo

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Precursor Diversity and Complexity of Lineage Relationships in the Outer Subventricular Zone of the Primate

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Clonally Related Forebrain Interneurons Disperse Broadly across Both Functional Areas and Structural Boundaries

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Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci

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Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse

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Transformation of the Radial Glia Scaffold Demarcates Two Stages of Human Cerebral Cortex Development

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Human Astrocyte Maturation Captured in 3D Cerebral Cortical Spheroids Derived from Pluripotent Stem Cells

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A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation

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Development and Arealization of the Cerebral Cortex

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CRISPR Interference-Based Platform for Multimodal Genetic Screens in Human iPSC-Derived Neurons

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Xenotransplanted Human Cortical Neurons Reveal Species-Specific Development and Functional Integration into Mouse Visual Circuits

inferredcites →https://doi.org/10.1016/j.neuron.2021.01.002openalex-snapshot

Parallel in vivo analysis of large-effect autism genes implicates cortical neurogenesis and estrogen in risk and resilience

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Self-Organized Formation of Polarized Cortical Tissues from ESCs and Its Active Manipulation by Extrinsic Signals

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2D and 3D Stem Cell Models of Primate Cortical Development Identify Species-Specific Differences in Progenitor Behavior Contributing to Brain Size

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Midbrain-like Organoids from Human Pluripotent Stem Cells Contain Functional Dopaminergic and Neuromelanin-Producing Neurons

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Human iPSC-Derived Cerebral Organoids Model Cellular Features of Lissencephaly and Reveal Prolonged Mitosis of Outer Radial Glia

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Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration

inferredcites →https://doi.org/10.1016/j.stem.2018.12.015openalex-snapshot

hESC-Derived Thalamic Organoids Form Reciprocal Projections When Fused with Cortical Organoids

inferredcites →https://doi.org/10.1016/j.stem.2019.08.002openalex-snapshot

Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development

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Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma

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Sliced Human Cortical Organoids for Modeling Distinct Cortical Layer Formation

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Are Organoids Ready for Prime Time?

inferredcites →https://doi.org/10.1016/j.stem.2021.02.015openalex-snapshot

Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases

inferredcites →https://doi.org/10.1016/j.stem.2021.08.015openalex-snapshot

Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids

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Down-syndrome-induced senescence disrupts the nuclear architecture of neural progenitors

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Loss of MECP2 Leads to Activation of P53 and Neuronal Senescence

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Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes

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Adult Human Glioblastomas Harbor Radial Glia-like Cells

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Axonal Extensions along Corticospinal Tracts from Transplanted Human Cerebral Organoids

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Somatic mutations alter the differentiation outcomes of iPSC-derived neurons

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Reduced Apoptosis and Cytochrome c–Mediated Caspase Activation in Mice Lacking Caspase 9

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Asymmetric Inheritance of Radial Glial Fibers by Cortical Neurons

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Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2

inferredcites →https://doi.org/10.1038/192766b0openalex-snapshot

Autoradiographic Study of Cell Migration during Histogenesis of Cerebral Cortex in the Mouse

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Establishment in culture of pluripotential cells from mouse embryos

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Inhibition of pluripotential embryonic stem cell differentiation by purified polypeptides

inferredcites →https://doi.org/10.1038/35055553openalex-snapshot

Neurons derived from radial glial cells establish radial units in neocortex

inferredcites →https://doi.org/10.1038/35102174openalex-snapshot

The development of neural stem cells

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Origin of GABAergic neurons in the human neocortex

inferredcites →https://doi.org/10.1038/nature05113openalex-snapshot

An RNA gene expressed during cortical development evolved rapidly in humans

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Reprogramming of human somatic cells to pluripotency with defined factors

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Neurogenic radial glia in the outer subventricular zone of human neocortex

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Spatio-temporal transcriptome of the human brain

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Self-formation of functional adenohypophysis in three-dimensional culture

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Cerebral organoids model human brain development and microcephaly

inferredcites →https://doi.org/10.1038/nature13800openalex-snapshot

A three-dimensional human neural cell culture model of Alzheimer’s disease

inferredcites →https://doi.org/10.1038/nature20123openalex-snapshot

Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma

inferredcites →https://doi.org/10.1038/nature22047openalex-snapshot

Cell diversity and network dynamics in photosensitive human brain organoids

inferredcites →https://doi.org/10.1038/nature22330openalex-snapshot

Assembly of functionally integrated human forebrain spheroids

inferredcites →https://doi.org/10.1038/nature25980openalex-snapshot

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Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling

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inferredcites →https://doi.org/10.1038/nbt.2967openalex-snapshot

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

inferredcites →https://doi.org/10.1038/nbt.4127openalex-snapshot

An in vivo model of functional and vascularized human brain organoids

inferredcites →https://doi.org/10.1038/ncomms10351openalex-snapshot

Functional anterior pituitary generated in self-organizing culture of human embryonic stem cells

inferredcites →https://doi.org/10.1038/ncomms14167openalex-snapshot

Dynamic behaviour of human neuroepithelial cells in the developing forebrain

inferredcites →https://doi.org/10.1038/ncomms2647openalex-snapshot

Mitotic spindle orientation predicts outer radial glial cell generation in human neocortex

inferredcites →https://doi.org/10.1038/ncomms9896openalex-snapshot

Generation of functional hippocampal neurons from self-organizing human embryonic stem cell-derived dorsomedial telencephalic tissue

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Using iPSC-derived neurons to uncover cellular phenotypes associated with Timothy syndrome

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Advancing the understanding of autism disease mechanisms through genetics

inferredcites →https://doi.org/10.1038/nmeth.3415openalex-snapshot

Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture

inferredcites →https://doi.org/10.1038/nmeth.3629openalex-snapshot

Fixed single-cell transcriptomic characterization of human radial glial diversity

inferredcites →https://doi.org/10.1038/nmeth.4304openalex-snapshot

Fused cerebral organoids model interactions between brain regions

inferredcites →https://doi.org/10.1038/nn.2553openalex-snapshot

OSVZ progenitors of human and ferret neocortex are epithelial-like and expand by integrin signaling

inferredcites →https://doi.org/10.1038/nn.3041openalex-snapshot

Human cerebral cortex development from pluripotent stem cells to functional excitatory synapses

inferredcites →https://doi.org/10.1038/nn.3536openalex-snapshot

Subcortical origins of human and monkey neocortical interneurons

inferredcites →https://doi.org/10.1038/nn.3541openalex-snapshot

Non-epithelial stem cells and cortical interneuron production in the human ganglionic eminences

inferredcites →https://doi.org/10.1038/nn1172openalex-snapshot

Cortical neurons arise in symmetric and asymmetric division zones and migrate through specific phases

inferredcites →https://doi.org/10.1038/nn1402openalex-snapshot

Directed differentiation of telencephalic precursors from embryonic stem cells

inferredcites →https://doi.org/10.1038/nn752openalex-snapshot

Mechanisms of cerebral cortical patterning in mice and humans

inferredcites →https://doi.org/10.1038/nrn2008openalex-snapshot

Patterns of neural stem and progenitor cell division may underlie evolutionary cortical expansion

inferredcites →https://doi.org/10.1038/nrn2151openalex-snapshot

Neuronal subtype specification in the cerebral cortex

inferredcites →https://doi.org/10.1038/nrn2719openalex-snapshot

Evolution of the neocortex: a perspective from developmental biology

inferredcites →https://doi.org/10.1038/nrn3586openalex-snapshot

Molecular logic of neocortical projection neuron specification, development and diversity

inferredcites →https://doi.org/10.1038/s41380-018-0229-8openalex-snapshot

Modeling amyloid beta and tau pathology in human cerebral organoids

inferredcites →https://doi.org/10.1038/s41380-019-0468-3openalex-snapshot

Modeling Alzheimer’s disease with iPSC-derived brain cells

inferredcites →https://doi.org/10.1038/s41380-020-0806-5openalex-snapshot

Patient-specific Alzheimer-like pathology in trisomy 21 cerebral organoids reveals BACE2 as a gene dose-sensitive AD suppressor in human brain

inferredcites →https://doi.org/10.1038/s41380-021-01206-xopenalex-snapshot

Correction: Patient-specific Alzheimer-like pathology in trisomy 21 cerebral organoids reveals BACE2 as a gene dose-sensitive AD suppressor in human brain

inferredcites →https://doi.org/10.1038/s41380-021-01243-6openalex-snapshot

Cortical organoids model early brain development disrupted by 16p11.2 copy number variants in autism

inferredcites →https://doi.org/10.1038/s41398-019-0643-yopenalex-snapshot

Mitochondrial deficits in human iPSC-derived neurons from patients with 22q11.2 deletion syndrome and schizophrenia

inferredcites →https://doi.org/10.1038/s41467-017-01105-2openalex-snapshot

Self-patterning of rostral-caudal neuroectoderm requires dual role of Fgf signaling for localized Wnt antagonism

inferredcites →https://doi.org/10.1038/s41467-020-18526-1openalex-snapshot

Integrative genomics identifies a convergent molecular subtype that links epigenomic with transcriptomic differences in autism

inferredcites →https://doi.org/10.1038/s41467-021-27464-5openalex-snapshot

Single-cell transcriptomics captures features of human midbrain development and dopamine neuron diversity in brain organoids

inferredcites →https://doi.org/10.1038/s41467-022-28043-yopenalex-snapshot

Expression of the transcription factor PU.1 induces the generation of microglia-like cells in human cortical organoids

inferredcites →https://doi.org/10.1038/s41467-022-30968-3openalex-snapshot

Orgo-Seq integrates single-cell and bulk transcriptomic data to identify cell type specific-driver genes associated with autism spectrum disorder

inferredcites →https://doi.org/10.1038/s41467-022-32115-4openalex-snapshot

Functional neuronal circuitry and oscillatory dynamics in human brain organoids

inferredcites →https://doi.org/10.1038/s41556-024-01393-zopenalex-snapshot

A cell fate decision map reveals abundant direct neurogenesis bypassing intermediate progenitors in the human developing neocortex

inferredcites →https://doi.org/10.1038/s41567-018-0046-7openalex-snapshot

Human brain organoids on a chip reveal the physics of folding

inferredcites →https://doi.org/10.1038/s41576-019-0100-zopenalex-snapshot

Induced pluripotent stem cells in disease modelling and drug discovery

inferredcites →https://doi.org/10.1038/s41576-020-0223-2openalex-snapshot

Lineage tracing meets single-cell omics: opportunities and challenges

inferredcites →https://doi.org/10.1038/s41583-022-00576-7openalex-snapshot

Genomics, convergent neuroscience and progress in understanding autism spectrum disorder

inferredcites →https://doi.org/10.1038/s41586-018-0414-6openalex-snapshot

RNA velocity of single cells

inferredcites →https://doi.org/10.1038/s41586-019-1289-xopenalex-snapshot

Individual brain organoids reproducibly form cell diversity of the human cerebral cortex

inferredcites →https://doi.org/10.1038/s41586-019-1654-9openalex-snapshot

Organoid single-cell genomic atlas uncovers human-specific features of brain development

inferredcites →https://doi.org/10.1038/s41586-020-1962-0openalex-snapshot

Cell stress in cortical organoids impairs molecular subtype specification

inferredcites →https://doi.org/10.1038/s41586-021-03209-8openalex-snapshot

Single-cell epigenomics reveals mechanisms of human cortical development

inferredcites →https://doi.org/10.1038/s41586-021-03343-3openalex-snapshot

Primate cell fusion disentangles gene regulatory divergence in neurodevelopment

inferredcites →https://doi.org/10.1038/s41586-021-03910-8openalex-snapshot

An atlas of cortical arealization identifies dynamic molecular signatures

inferredcites →https://doi.org/10.1038/s41586-021-03953-xopenalex-snapshot

Regulation of prefrontal patterning and connectivity by retinoic acid

inferredcites →https://doi.org/10.1038/s41586-021-04230-7openalex-snapshot

Individual human cortical progenitors can produce excitatory and inhibitory neurons

inferredcites →https://doi.org/10.1038/s41586-021-04237-0openalex-snapshot

Single-cell delineation of lineage and genetic identity in the mouse brain

inferredcites →https://doi.org/10.1038/s41586-021-04358-6openalex-snapshot

Autism genes converge on asynchronous development of shared neuron classes

inferredcites →https://doi.org/10.1038/s41586-021-04369-3openalex-snapshot

A human brain vascular atlas reveals diverse mediators of Alzheimer’s risk

inferredcites →https://doi.org/10.1038/s41586-022-04510-wopenalex-snapshot

The development and evolution of inhibitory neurons in primate cerebrum

inferredcites →https://doi.org/10.1038/s41586-023-06984-8openalex-snapshot

An epigenetic barrier sets the timing of human neuronal maturation

inferredcites →https://doi.org/10.1038/s41587-019-0085-3openalex-snapshot

Specification of positional identity in forebrain organoids

inferredcites →https://doi.org/10.1038/s41587-020-00763-wopenalex-snapshot

Generation of human striatal organoids and cortico-striatal assembloids from human pluripotent stem cells

inferredcites →https://doi.org/10.1038/s41587-023-02031-zopenalex-snapshot

Combined small-molecule treatment accelerates maturation of human pluripotent stem cell-derived neurons

inferredcites →https://doi.org/10.1038/s41591-018-0139-yopenalex-snapshot

Genetically engineered human cortical spheroid models of tuberous sclerosis

inferredcites →https://doi.org/10.1038/s41591-019-0371-0openalex-snapshot

Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopia

inferredcites →https://doi.org/10.1038/s41591-020-1043-9openalex-snapshot

Neuronal defects in a human cellular model of 22q11.2 deletion syndrome

inferredcites →https://doi.org/10.1038/s41592-018-0255-0openalex-snapshot

Reliability of human cortical organoid generation

inferredcites →https://doi.org/10.1038/s41592-019-0586-5openalex-snapshot

Engineering of human brain organoids with a functional vascular-like system

inferredcites →https://doi.org/10.1038/s41592-021-01344-8openalex-snapshot

Lineage recording in human cerebral organoids

inferredcites →https://doi.org/10.1038/s41593-018-0316-9openalex-snapshot

Differentiation and maturation of oligodendrocytes in human three-dimensional neural cultures

inferredcites →https://doi.org/10.1038/s41593-019-0350-2openalex-snapshot

Cerebral organoids at the air–liquid interface generate diverse nerve tracts with functional output

inferredcites →https://doi.org/10.1038/s41593-020-0602-1openalex-snapshot

Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map

inferredcites →https://doi.org/10.1038/s41593-021-00802-yopenalex-snapshot

Long-term maturation of human cortical organoids matches key early postnatal transitions

inferredcites →https://doi.org/10.1038/s41593-021-00862-0openalex-snapshot

Genome-wide CRISPRi/a screens in human neurons link lysosomal failure to ferroptosis

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Identification of neural oscillations and epileptiform changes in human brain organoids

inferredcites →https://doi.org/10.1038/s41593-022-01011-xopenalex-snapshot

Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics

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A CRISPRi/a platform in human iPSC-derived microglia uncovers regulators of disease states

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Generation and long-term culture of advanced cerebral organoids for studying later stages of neural development

inferredcites →https://doi.org/10.1038/s41598-017-15793-9openalex-snapshot

Developmental excitatory-to-inhibitory GABA-polarity switch is disrupted in 22q11.2 deletion syndrome: a potential target for clinical therapeutics

inferredcites →https://doi.org/10.1038/sdata.2016.18openalex-snapshot

The FAIR Guiding Principles for scientific data management and stewardship

inferredcites →https://doi.org/10.1038/tp.2016.206openalex-snapshot

Analysis of induced pluripotent stem cells carrying 22q11.2 deletion

inferredcites →https://doi.org/10.1056/nejmoa075974openalex-snapshot

Association between Microdeletion and Microduplication at 16p11.2 and Autism

inferredcites →https://doi.org/10.1073/pnas.0308600100openalex-snapshot

Neurons arise in the basal neuroepithelium of the early mammalian telencephalon: A major site of neurogenesis

inferredcites →https://doi.org/10.1073/pnas.0812394106openalex-snapshot

Partial reversal of Rett Syndrome-like symptoms in MeCP2 mutant mice

inferredcites →https://doi.org/10.1073/pnas.101122598openalex-snapshot

Targeted mutagenesis of Lis1 disrupts cortical development and LIS1 homodimerization

inferredcites →https://doi.org/10.1073/pnas.1315710110openalex-snapshot

Self-organization of axial polarity, inside-out layer pattern, and species-specific progenitor dynamics in human ES cell–derived neocortex

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Human cerebral organoids recapitulate gene expression programs of fetal neocortex development

inferredcites →https://doi.org/10.1073/pnas.1912175116openalex-snapshot

Human-specific tandem repeat expansion and differential gene expression during primate evolution

inferredcites →https://doi.org/10.1073/pnas.2019415118openalex-snapshot

Human intermediate progenitor diversity during cortical development

inferredcites →https://doi.org/10.1073/pnas.202476899openalex-snapshot

Tuberous sclerosis complex-1 and -2 gene products function together to inhibit mammalian target of rapamycin (mTOR)-mediated downstream signaling

inferredcites →https://doi.org/10.1073/pnas.2024795118openalex-snapshot

Transcriptional network orchestrating regional patterning of cortical progenitors

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Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders

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Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells.

inferredcites →https://doi.org/10.1083/jcb.94.2.253openalex-snapshot

Retinoic acid induces embryonal carcinoma cells to differentiate into neurons and glial cells.

inferredcites →https://doi.org/10.1088/1741-2552/ac310aopenalex-snapshot

Light-weight electrophysiology hardware and software platform for cloud-based neural recording experiments

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Roles of Ipsc in Advancing Treatments for Neurological Disorders

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Role of brain organoids in Rett syndrome

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Spatiotemporal expression of thyroid hormone transporter MCT8 and THRA mRNA in human cerebral organoids recapitulating first trimester cortex development

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Spatiotemporal expression of thyroid hormone transporter MCT8 and THRA mRNA in human cerebral organoids recapitulating first trimester cortex development

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Rare coding mutations identify 36 large-effect risk genes in obsessive-compulsive disorder and chronic tic disorders

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Longitudinal course is an essential dimension in psychiatric classification

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Artificial Intelligence: Fundamentals and Breakthrough Applications in Epilepsy

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Ciliary biology intersects autism and congenital heart disease

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Understanding the neurological implications of acute and long COVID using brain organoids

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Internet-Connected Cortical Organoids for Project-Based Stem Cell and Neuroscience Education

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Organoids as translational models in neuroregeneration after central nervous system injury

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Boosting Neurogenesis in the Adult Hippocampus Using Antidepressants and Mesenchymal Stem Cells

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AI-Guided Systems Neurogenomics in Neurodevelopmental Disorders

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Human Brain Organoids in Migraine Research: Pathogenesis and Drug Development

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Use of Brain-Derived Stem/Progenitor Cells and Derived Extracellular Vesicles to Repair Damaged Neural Tissues: Lessons Learned from Connective Tissue Repair Regarding Variables Limiting Progress and Approaches to Overcome Limitations

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Proteome dynamics reveal Leiomodin 1 as a key regulator of myogenic differentiation

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Rubella virus tropism and single-cell responses in human primary tissue and microglia-containing organoids

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Rubella virus tropism and single cell responses in human primary tissue and microglia-containing organoids

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Rubella virus tropism and single-cell responses in human primary tissue and microglia-containing organoids

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