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An Overview of DNA-Based Applications for the Assessment of Benthic Macroinvertebrates Biodiversity in Mediterranean Aquatic Ecosystems
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Macroinvertebrate diversity and conservation status of Mediterranean ponds in Italy: water permanence and mesohabitat influence
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A comparative analysis of metabarcoding and morphology‐based identification of benthic communities across different regional seas
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Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution
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Improved freshwater macroinvertebrate detection from environmental DNA through minimized nontarget amplification
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The tiny mayfly in the room: implications of size-dependent invertebrate taxonomic identification for biomonitoring data properties
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Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects
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Assessing the ecological status of small Mediterranean rivers using benthic macroinvertebrates and macrophytes as indicators
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Taxonomic Resolution and Quantification of Freshwater Macroinvertebrate Samples from an Australian Dryland River: The Benefits and Costs of Using Species Abundance Data
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Towards a multimetric index for ecological assessment of Mediterranean flatland ponds: the use of macroinvertebrates as bioindicators
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Significant taxon sampling gaps in DNA databases limit the operational use of marine macrofauna metabarcoding
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Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity
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Optimal detection and control strategies for invasive species management
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The usefulness of large body-size macroinvertebrates in the rapid ecological assessment of Mediterranean lagoons
inferredcites →https://doi.org/10.1016/j.ecolind.2014.05.030openalex-snapshot
Macroinvertebrate indicators of ecological status in Mediterranean temporary stream types of the Balearic Islands
inferredcites →https://doi.org/10.1016/j.ecolind.2014.06.005openalex-snapshot
Structure, functional organization and biological traits of macroinvertebrate assemblages from leaf-bags and benthic samples in a third-order stream of Central Apennines (Italy)
inferredcites →https://doi.org/10.1016/j.marenvres.2018.12.009openalex-snapshot
Multi-marker eDNA metabarcoding survey to assess the environmental impact of three offshore gas platforms in the North Adriatic Sea (Italy)
inferredcites →https://doi.org/10.1016/j.rsma.2020.101307openalex-snapshot
Gap-analysis and annotated reference library for supporting macroinvertebrate metabarcoding in Atlantic Iberia
inferredcites →https://doi.org/10.1016/j.scitotenv.2018.05.002openalex-snapshot
The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems
inferredcites →https://doi.org/10.1016/j.scitotenv.2019.04.247openalex-snapshot
DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work
inferredcites →https://doi.org/10.1016/j.scitotenv.2020.141729openalex-snapshot
Status and prospects of marine NIS detection and monitoring through (e)DNA metabarcoding
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Marine Biodiversity of the Mediterranean Sea: Situation, Problems and Prospects for Future Research
inferredcites →https://doi.org/10.1017/s1464793105006950openalex-snapshot
Freshwater biodiversity: importance, threats, status and conservation challenges
inferredcites →https://doi.org/10.1021/acs.est.9b01855openalex-snapshot
Environmental DNA Metabarcoding: A Promising Tool for Ballast Water Monitoring
inferredcites →https://doi.org/10.1021/es404734popenalex-snapshot
Environmental Conditions Influence eDNA Persistence in Aquatic Systems
inferredcites →https://doi.org/10.1038/35002501openalex-snapshot
Biodiversity hotspots for conservation priorities
inferredcites →https://doi.org/10.1038/nature11148openalex-snapshot
Biodiversity loss and its impact on humanity
inferredcites →https://doi.org/10.1038/s41598-017-05223-1openalex-snapshot
Controls on eDNA movement in streams: Transport, Retention, and Resuspension
inferredcites →https://doi.org/10.1038/s41598-018-34447-yopenalex-snapshot
DNA barcodes of Antipode marine invertebrates in Bay of Biscay and Gulf of Lion ports suggest new biofouling challenges
inferredcites →https://doi.org/10.1038/s41598-019-48984-7openalex-snapshot
Environmental DNA size sorting and degradation experiment indicates the state of Daphnia magna mitochondrial and nuclear eDNA is subcellular
inferredcites →https://doi.org/10.1038/s41598-019-50571-9openalex-snapshot
Combining ddPCR and environmental DNA to improve detection capabilities of a critically endangered freshwater invertebrate
inferredcites →https://doi.org/10.1038/s42003-017-0005-3openalex-snapshot
Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms
inferredcites →https://doi.org/10.1086/678128openalex-snapshot
Utility of environmental DNA for monitoring rare and indicator macroinvertebrate species
inferredcites →https://doi.org/10.1093/bib/bbv001openalex-snapshot
Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses
inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot
Biological identifications through DNA barcodes
inferredcites →https://doi.org/10.1098/rspb.2019.1409openalex-snapshot
Predicting the fate of eDNA in the environment and implications for studying biodiversity
inferredcites →https://doi.org/10.1111/1365-2664.12306openalex-snapshot
REVIEW: The detection of aquatic animal species using environmental DNA – a review of eDNA as a survey tool in ecology
inferredcites →https://doi.org/10.1111/1755-0998.13235openalex-snapshot
Italian odonates in the Pandora's box: A comprehensive DNA barcoding inventory shows taxonomic warnings at the Holarctic scale
inferredcites →https://doi.org/10.1111/2041-210x.12687openalex-snapshot
PrimerMiner : an r package for development and in silico validation of DNA metabarcoding primers
inferredcites →https://doi.org/10.1111/2041-210x.12789openalex-snapshot
Assessing strengths and weaknesses of DNA metabarcoding‐based macroinvertebrate identification for routine stream monitoring
inferredcites →https://doi.org/10.1111/ddi.12913openalex-snapshot
Distribution trends of European dragonflies under climate change
inferredcites →https://doi.org/10.1111/j.1365-2427.2006.01610.xopenalex-snapshot
Assessment of European streams with diatoms, macrophytes, macroinvertebrates and fish: a comparative metric‐based analysis of organism response to stress
inferredcites →https://doi.org/10.1111/j.1365-2664.2006.01227.xopenalex-snapshot
Beyond control: wider implications for the management of biological invasions
inferredcites →https://doi.org/10.1111/j.1365-2664.2012.02171.xopenalex-snapshot
Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrog Lithobates catesbeianus
inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01678.xopenalex-snapshot
bold : The Barcode of Life Data System (http://www.barcodinglife.org)
inferredcites →https://doi.org/10.1111/mec.13428openalex-snapshot
Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
inferredcites →https://doi.org/10.1111/mec.14350openalex-snapshot
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
inferredcites →https://doi.org/10.1111/mec.14478openalex-snapshot
Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
inferredcites →https://doi.org/10.1111/mec.15641openalex-snapshot
Marine biomonitoring with eDNA: Can metabarcoding of water samples cut it as a tool for surveying benthic communities?
inferredcites →https://doi.org/10.1111/mec.15698openalex-snapshot
Benthic monitoring of oil and gas offshore platforms in the North Sea using environmental DNA metabarcoding
inferredcites →https://doi.org/10.1126/science.1187512openalex-snapshot
Global Biodiversity: Indicators of Recent Declines
inferredcites →https://doi.org/10.1146/annurev-marine-120308-080950openalex-snapshot
DNA Barcoding of Marine Metazoa
inferredcites →https://doi.org/10.1186/1742-9994-10-34openalex-snapshot
A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
inferredcites →https://doi.org/10.1186/1742-9994-10-45openalex-snapshot
Environmental monitoring using next generation sequencing: rapid identification of macroinvertebrate bioindicator species
inferredcites →https://doi.org/10.1191/0309133306pp472raopenalex-snapshot
Mediterranean ecosystems: problems and tools for conservation
inferredcites →https://doi.org/10.12681/mms.21987openalex-snapshot
New Alien Mediterranean Biodiversity Records 2020
inferredcites →https://doi.org/10.1371/journal.pone.0011842openalex-snapshot
The Biodiversity of the Mediterranean Sea: Estimates, Patterns, and Threats
inferredcites →https://doi.org/10.1371/journal.pone.0023398openalex-snapshot
Persistence of Environmental DNA in Freshwater Ecosystems
inferredcites →https://doi.org/10.1371/journal.pone.0130324openalex-snapshot
Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
inferredcites →https://doi.org/10.1371/journal.pone.0183347openalex-snapshot
DNA in a bottle—Rapid metabarcoding survey for early alerts of invasive species in ports
inferredcites →https://doi.org/10.1371/journal.pone.0217084openalex-snapshot
Assessment of BOLD and GenBank – Their accuracy and reliability for the identification of biological materials
inferredcites →https://doi.org/10.1525/bio.2010.60.1.7openalex-snapshot
Biodiversity Losses and Ecosystem Function in Freshwaters: Emerging Conclusions and Research Directions
inferredcites →https://doi.org/10.1890/1540-9295(2007)5[33:fbwmie]2.0.co;2openalex-snapshot
Freshwater biomonitoring with macroinvertebrates in East Asia
inferredcites →https://doi.org/10.1899/0887-3593(2006)25[271:cffic]2.0.co;2openalex-snapshot
Challenges for freshwater invertebrate conservation
inferredcites →https://doi.org/10.3389/fenvs.2017.00011openalex-snapshot
Validation and Development of COI Metabarcoding Primers for Freshwater Macroinvertebrate Bioassessment
inferredcites →https://doi.org/10.3389/fmars.2016.00096openalex-snapshot
Benchmarking DNA Metabarcoding for Biodiversity-Based Monitoring and Assessment
inferredcites →https://doi.org/10.3390/jmse8070538openalex-snapshot
Gap Analysis for DNA Barcode Reference Libraries for Aquatic Macroinvertebrate Species in the Apulia Region (Southeast of Italy)
inferredcites →https://doi.org/10.3897/mbmg.1.14625openalex-snapshot
Short COI markers for freshwater macroinvertebrate metabarcoding
inferredcites →https://doi.org/10.3897/rio.2.e11321openalex-snapshot
DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe
inferredcites →https://doi.org/10.5281/zenodo.15145663openalex-snapshot
Table 1 in A new Gammarus species from Xinjiang Uygur Autonomous Region (China) with a key to Xinjiang freshwater gammarids (Crustacea, Amphipoda, Gammaridae)
inferredcites →https://doi.org/10.5860/choice.30-6159openalex-snapshot
Freshwater biomonitoring and benthic macroinvertebrates
inferredcites →https://doi.org/10.7287/peerj.preprints.1023openalex-snapshot
Can DNA-based ecosystem assessments quantify species abundance? Testing primer bias and biomass - sequence relationships with an innovative metabarcoding protocol
inferredcites →https://doi.org/10.7287/peerj.preprints.2044v5openalex-snapshot
Validation and development of COI metabarcoding primers for freshwater macroinvertebrate bioassessment
inferredcites →https://doi.org/10.7287/peerj.preprints.3037v1openalex-snapshot
Short COI markers for freshwater macroinvertebrate metabarcoding
inferredcites →https://doi.org/10.7717/peerj.4705openalex-snapshot
DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Evaluating the potential of DNA metabarcoding for ecological status assessment under the Water Framework Directive: A case study on benthic invertebrates from Western Carpathian streams
inferred← citeshttps://doi.org/10.1002/ece3.74462openalex-snapshot
Targeted eDNA Survey Enables Consistent Detection of the Invasive Blue Crab in Trans‐Border Adriatic Coastal‐Marine Ecosystems
inferred← citeshttps://doi.org/10.1007/s00027-026-01365-5openalex-snapshot
eDNA insights and macroinvertebrate biomonitoring: a review of current practices and future directions for freshwater ecosystem assessment
inferred← citeshttps://doi.org/10.1016/b978-0-12-824112-7.00005-4openalex-snapshot
Possible solutions for the conservation of benthic habitats and organisms
inferred← citeshttps://doi.org/10.1016/j.algal.2023.103340openalex-snapshot
Harnessing the power of eDNA technology for macroalgal ecological studies: Recent advances, challenges, and future perspectives
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2021.113005openalex-snapshot
Relationships between size and abundance in beach plastics: A power-law approach
inferred← citeshttps://doi.org/10.1038/s41598-024-69043-wopenalex-snapshot
Assessing benthic macroinvertebrate communities’ spatial heterogeneity in Mediterranean transitional waters through eDNA metabarcoding
inferred← citeshttps://doi.org/10.1111/zsc.12613openalex-snapshot
Revealing cryptic diversity and population divergence in subtropical aphids through DNA barcoding
inferred← citeshttps://doi.org/10.11614/ksl.2021.54.3.221openalex-snapshot
Evaluation of Benthic Macroinvertebrate Diversity in a Stream of Abandoned Mine Land Based on Environmental DNA (eDNA) Approach
inferred← citeshttps://doi.org/10.3389/fenvs.2026.1843967openalex-snapshot
First application of the conservation and human use index (CHUI) for the evaluation of coastal social-ecological conditions across ten european case studies
inferred← citeshttps://doi.org/10.3389/fmars.2025.1688716openalex-snapshot
eDNA metabarcoding for qualitative and semi-quantitative assessment of phytoplankton towards eco-sustainable mariculture in the Mediterranean Sea
inferred← citeshttps://doi.org/10.3390/biology12070923openalex-snapshot
Current Status of Omics in Biological Quality Elements for Freshwater Biomonitoring
inferred← citeshttps://doi.org/10.3390/biology14040410openalex-snapshot
A Study on the Community and Ecological Characteristics of Benthic Invertebrates in the Ulungu River, Xinjiang, via eDNA Metabarcoding and Morphological Methods
inferred← citeshttps://doi.org/10.3390/d14110991openalex-snapshot
Exploring the Biodiversity of a European NATURA 2000 Mediterranean Lagoon through eDNA Metabarcoding
inferred← citeshttps://doi.org/10.3390/w14213407openalex-snapshot
Seasonal Dynamics and Heavy Rain Effects on the Diversity of Microeukaryome in the Nakdonggang River
inferred← citeshttps://doi.org/10.3390/w15020308openalex-snapshot
eDNA Biomonitoring of Macroinvertebrate Communities for the Bioassessment of a River’s Ecological Status
inferred← citeshttps://doi.org/10.3897/bdj.9.e67169openalex-snapshot
Building a transnational biodiversity geo-database of the protected areas in the Adriatic-Ionian Macro-Region: approaches and results from the IMPRECO Project
inferred← citeshttps://doi.org/10.3897/neobiota.70.71862openalex-snapshot
Current limitations and future prospects of detection and biomonitoring of NIS in the Mediterranean Sea through environmental DNA
inferred← citeshttps://doi.org/10.7717/peerj.14321openalex-snapshot
Benthic invertebrates in Svalbard fjords—when metabarcoding does not outperform traditional biodiversity assessment
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