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eDNA Biomonitoring of Macroinvertebrate Communities for the Bioassessment of a River’s Ecological Status

https://doi.org/10.3390/w15020308

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Conservation of freshwater macroinvertebrate biodiversity in tropical regions

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The role of macroinvertebrates for conservation of freshwater systems

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Improved freshwater macroinvertebrate detection from environmental DNA through minimized nontarget amplification

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Development of an index based on fish, macroinvertebrates, phytoplankton, and physicochemical properties to assess urban aquatic ecosystems in Jinan, China

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Effects of elevated water temperature on fish and macroinvertebrate communities below small dams

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Macroinvertebrate instream flow studies after 20 years: a role in stream management and restoration

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Freshwater Macroinvertebrates of the Mid-Atlantic Region

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The role of zoobenthos in energy flow in two shallow lakes

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Sources and Properties of Natural Organic Matter (NOM) in Water Along the Dongjiang River (the Source of Hong Kong’s Drinking Water) and Toxicological Assay of Its Chlorination By-Products

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Influence of salinity and prey presence on the survival of aquatic macroinvertebrates of a freshwater marsh

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Which group is best? Attributes of different biological assemblages used in freshwater biomonitoring programs

inferredcites →https://doi.org/10.1007/s10750-016-2856-xopenalex-snapshot

Macroinvertebrate community composition and diversity in ephemeral and perennial ponds on unregulated floodplain meadows in the UK

inferredcites →https://doi.org/10.1007/s10750-018-3750-5openalex-snapshot

Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds

inferredcites →https://doi.org/10.1007/s11356-021-12922-wopenalex-snapshot

Stream biodiversity and monitoring in North Central, Nigeria: the use of macroinvertebrate indicator species as surrogates

inferredcites →https://doi.org/10.1016/0043-1354(72)90170-4openalex-snapshot

An empirical biotic index of the quality of water in south African streams and rivers

inferredcites →https://doi.org/10.1016/0269-7491(95)00033-nopenalex-snapshot

Macroinvertebrate community as a biological indicator of ecological and toxicological factors in Lake Saint-François (Québec)

inferredcites →https://doi.org/10.1016/j.biocon.2014.11.019openalex-snapshot

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

inferredcites →https://doi.org/10.1016/j.dsr.2022.103806openalex-snapshot

Comparison of structure and diversity of benthic communities in the Okinawa Trough and Mariana Trench by environmental DNA metabarcoding

inferredcites →https://doi.org/10.1016/j.ecolind.2012.03.013openalex-snapshot

Assessing the effects of landscape pattern on river water quality at multiple scales: A case study of the Dongjiang River watershed, China

inferredcites →https://doi.org/10.1016/j.ecolind.2016.04.048openalex-snapshot

Distribution of heavy metals and benthic macroinvertebrates: Impacts from typical inflow river sediments in the Taihu Basin, China

inferredcites →https://doi.org/10.1016/j.envpol.2019.113660openalex-snapshot

Emission estimation and fate modelling of three typical pesticides in Dongjiang River basin, China

inferredcites →https://doi.org/10.1016/j.envpol.2021.117076openalex-snapshot

Identifying and classifying macroinvertebrate indicator signature traits and ecological preferences along urban pollution gradient in the Niger Delta

inferredcites →https://doi.org/10.1016/j.fishres.2022.106365openalex-snapshot

Comparison of fish communities using environmental DNA metabarcoding and capture methods in a freshwater lake: A new set of universal PCR primers

inferredcites →https://doi.org/10.1016/j.jglr.2011.12.009openalex-snapshot

Benthic macroinvertebrate community structure in Lake Taihu, China: Effects of trophic status, wind-induced disturbance and habitat complexity

inferredcites →https://doi.org/10.1016/j.marpolbul.2006.05.025openalex-snapshot

Using historical data, expert judgement and multivariate analysis in assessing reference conditions and benthic ecological status, according to the European Water Framework Directive

inferredcites →https://doi.org/10.1016/j.marpolbul.2007.12.002openalex-snapshot

BITS: A SMART indicator for soft-bottom, non-tidal lagoons

inferredcites →https://doi.org/10.1016/j.scitotenv.2016.01.162openalex-snapshot

Influences of the land use pattern on water quality in low-order streams of the Dongjiang River basin, China: A multi-scale analysis

inferredcites →https://doi.org/10.1016/j.scitotenv.2021.148346openalex-snapshot

Geo-climatic factors weaken the effectiveness of phytoplankton diversity as a water quality indicator in a large sediment-laden river

inferredcites →https://doi.org/10.1016/j.scitotenv.2021.151783openalex-snapshot

Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

inferredcites →https://doi.org/10.1016/j.scitotenv.2022.158958openalex-snapshot

Environmental DNA metabarcoding reveals the impact of different land use on multitrophic biodiversity in riverine systems

inferredcites →https://doi.org/10.1016/j.tree.2014.04.003openalex-snapshot

Environmental DNA for wildlife biology and biodiversity monitoring

inferredcites →https://doi.org/10.1016/s0025-326x(00)00061-8openalex-snapshot

A Marine Biotic Index to Establish the Ecological Quality of Soft-Bottom Benthos Within European Estuarine and Coastal Environments

inferredcites →https://doi.org/10.1016/s1146-609x(99)00125-3openalex-snapshot

Food supply for waders (Aves: Charadrii) in an estuarine area in the Bay of Cádiz (SW Iberian Peninsula)

inferredcites →https://doi.org/10.1021/acs.est.2c06919openalex-snapshot

Environmental DNA Biomonitoring Reveals the Interactive Effects of Dams and Nutrient Enrichment on Aquatic Multitrophic Communities

inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot

QIIME allows analysis of high-throughput community sequencing data

inferredcites →https://doi.org/10.1038/s41598-018-28624-2openalex-snapshot

Ecological influence of sediment bypass tunnels on macroinvertebrates in dam-fragmented rivers by DNA metabarcoding

inferredcites →https://doi.org/10.1038/s42003-022-03216-zopenalex-snapshot

Spatio-temporal patterns of multi-trophic biodiversity and food-web characteristics uncovered across a river catchment using environmental DNA

inferredcites →https://doi.org/10.1046/j.1466-822x.2003.00015.xopenalex-snapshot

A tribute to Claude Shannon (1916–2001) and a plea for more rigorous use of species richness, species diversity and the ‘Shannon–Wiener’ Index

inferredcites →https://doi.org/10.1051/limn/2010027openalex-snapshot

Effects of heavy metals on benthic macroinvertebrate communities in high mountain streams

inferredcites →https://doi.org/10.1073/pnas.1406468111openalex-snapshot

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

inferredcites →https://doi.org/10.1086/678128openalex-snapshot

Utility of environmental DNA for monitoring rare and indicator macroinvertebrate species

inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot

Search and clustering orders of magnitude faster than BLAST

inferredcites →https://doi.org/10.1111/1365-2664.12306openalex-snapshot

REVIEW: The detection of aquatic animal species using environmental DNA – a review of eDNA as a survey tool in ecology

inferredcites →https://doi.org/10.1111/1755-0998.12355openalex-snapshot

Universal and blocking primer mismatches limit the use of high‐throughput DNA sequencing for the quantitative metabarcoding of arthropods

inferredcites →https://doi.org/10.1111/fwb.13210openalex-snapshot

Using environmental DNA and occupancy modelling to identify drivers of eastern hellbender (Cryptobranchus alleganiensis alleganiensis) extirpation

inferredcites →https://doi.org/10.1111/fwb.13319openalex-snapshot

Riverine distribution of mussel environmental DNA reflects a balance among density, transport, and removal processes

inferredcites →https://doi.org/10.1111/j.1365-2427.2008.02041.xopenalex-snapshot

Macroinvertebrate diversity in headwater streams: a review

inferredcites →https://doi.org/10.1111/j.1442-9993.1995.tb00525.xopenalex-snapshot

Design and implementation of rapid assessment approaches for water resource monitoring using benthic macroinvertebrates

inferredcites →https://doi.org/10.1111/j.1755-263x.2010.00158.xopenalex-snapshot

“Sight‐unseen” detection of rare aquatic species using environmental DNA

inferredcites →https://doi.org/10.1111/lre.12358openalex-snapshot

Seasonal water‐level fluctuations and changes in macro‐benthic community structure in tropical reservoirs: A Sri Lankan case study

inferredcites →https://doi.org/10.1111/mec.13428openalex-snapshot

Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

inferredcites →https://doi.org/10.1111/mec.16659openalex-snapshot

Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

inferredcites →https://doi.org/10.1899/09-160.1openalex-snapshot

Macroinvertebrate tolerance values and an assemblage tolerance index (ATI) for western USA streams and rivers

inferredcites →https://doi.org/10.3389/fmars.2017.00107openalex-snapshot

DNA Sequencing as a Tool to Monitor Marine Ecological Status

inferredcites →https://doi.org/10.3389/fmars.2021.684955openalex-snapshot

Combining Multiple Markers in Environmental DNA Metabarcoding to Assess Deep-Sea Benthic Biodiversity

inferredcites →https://doi.org/10.3390/d13030112openalex-snapshot

An Overview of DNA-Based Applications for the Assessment of Benthic Macroinvertebrates Biodiversity in Mediterranean Aquatic Ecosystems

inferredcites →https://doi.org/10.3390/fishes7050250openalex-snapshot

An Assessment of Seasonal Differences in Fish Populations in Laizhou Bay Using Environmental DNA and Conventional Resource Survey Techniques

inferredcites →https://doi.org/10.3390/ijerph191711087openalex-snapshot

Heavy Metal Pollution in Xinfengjiang River Sediment and the Response of Fish Species Abundance to Heavy Metal Concentrations

inferredcites →https://doi.org/10.3390/w13030331openalex-snapshot

Integration of DNA-Based Approaches in Aquatic Ecological Assessment Using Benthic Macroinvertebrates

inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot

VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4725873openalex-extracted

Assessing Environmental DNA for Estuarine Fish Habitat Modeling: A Comparison with a Traditional Approach

inferred← citeshttps://doi.org/10.1002/aqc.70328openalex-snapshot

Environmental DNA (eDNA) and Field Surveys as Complementary Tools for the Biomonitoring of Amphibian Communities

inferred← citeshttps://doi.org/10.1002/ece3.71854openalex-snapshot

Can eDNA Replace Trawl Surveys for Estuarine Species Distribution Modeling: Insights From Collichthys lucidus in the Yangtze River Estuary

inferred← citeshttps://doi.org/10.1007/s11356-026-38141-9openalex-snapshot

Macroinvertebrate diversity as the bioindicators of freshwater ecosystem health: deterioration in physicochemical water quality parameters

inferred← citeshttps://doi.org/10.1016/j.biocontrol.2026.106048openalex-snapshot

Metabarcoding stem residue as a novel environmental DNA (eDNA) tool to identify spread of Phragmites australis biological control agents

inferred← citeshttps://doi.org/10.1016/j.ecolind.2025.114254openalex-snapshot

The eDNA methods outperforming the traditional method in capturing the diversity of stream benthic macroinvertebrates

inferred← citeshttps://doi.org/10.1016/j.envpol.2023.122157openalex-snapshot

eDNA-based diversity and multitrophic network reveal the effects of land use and pollutants on the subtropical Dongjiang River systems

inferred← citeshttps://doi.org/10.1016/j.jenvman.2023.119972openalex-snapshot

Environmental DNA and remote sensing datasets reveal the spatial distribution of aquatic insects in a disturbed subtropical river system

inferred← citeshttps://doi.org/10.1016/j.wroa.2026.100550openalex-snapshot

Decoding benthic macroinvertebrate communities in freshwater ecosystems leveraging environmental DNA

inferred← citeshttps://doi.org/10.1080/0035919x.2026.2646856openalex-snapshot

Macroinvertebrate community responses to Pteridium aquilinum spread in an Afromontane river ecosystem: a case study of the Mulanje Mountain Forest Reserve in Malawi

inferred← citeshttps://doi.org/10.1080/02705060.2024.2358071openalex-snapshot

Study on the biodiversity of macroinvertebrate in the Dayang River Basin during summer based on environmental DNA and morphological analysis

inferred← citeshttps://doi.org/10.3390/toxics11110903openalex-snapshot

Insights in Pharmaceutical Pollution: The Prospective Role of eDNA Metabarcoding

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