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Assessing Anthocyanin Biosynthesis in Solanaceae as a Model Pathway for Secondary Metabolism

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Organization and differential activation of a gene family encoding the plant defense enzyme chalcone synthase in Phaseolus vulgaris

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The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector

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Methylation effect on chalcone synthase gene expression determines anthocyanin pigmentation in floral tissues of two Oncidium orchid cultivars

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Endogenous post-transcriptional gene silencing of flavone synthase resulting in high accumulation of anthocyanins in black dahlia cultivars

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Functional analysis of Antirrhinum kelloggii flavonoid 3′-hydroxylase and flavonoid 3′,5′-hydroxylase genes; critical role in flower color and evolution in the genus Antirrhinum

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Heterologous Expression of Two Gentian Cytochrome P450 Genes can Modulate the Intensity of Flower Pigmentation in Transgenic Tobacco Plants

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Cytochrome P450s in flavonoid metabolism

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Identification of key amino acids for the evolution of promoter target specificity of anthocyanin and proanthocyanidin regulating MYB factors

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Induction of differential flower pigmentation patterns by RNAi using promoters with distinct tissue-specific activity

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Deviations from michaelis-menten behaviour of plant glutamate dehydrogenase with ammonium as variable substrate

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Flavonoid components and flower color change in transgenic tobacco plants by suppression of chalcone isomerase gene

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Complete chloroplast genome sequencing of vetiver grass (Chrysopogon zizanioides) identifies markers that distinguish the non-fertile ‘Sunshine’ cultivar from other accessions

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Transcriptional control of flavonoid biosynthesis by MYB–bHLH–WDR complexes

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Divergent evolution of the thiolase superfamily and chalcone synthase family

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Expression of chimeric P450 genes encoding flavonoid‐3′,5′‐hydroxylase in transgenic tobacco and petunia plants1

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Regulation of anthocyanin biosynthesis in UV-A-irradiated cell cultures of carrot and in organs of intact carrot plants.

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Genomic organization of the genes encoding dihydroflavonol 4-reductase for flower pigmentation in the Japanese and common morning glories

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Biosynthesis of flavonoids and effects of stress

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Structures and Antioxidant Activity of Anthocyanins in Many Accessions of Eggplant and Its Related Species

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Molecular evolution of the chalcone synthase multigene family in the morning glory genome

inferredcites →https://doi.org/10.1023/a:1024018729349openalex-snapshot

Enhancing anthocyanin production by altering competition for substrate between flavonol synthase and dihydroflavonol 4-reductase

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A new petunia flower colour generated by transformation of a mutant with a maize gene

inferredcites →https://doi.org/10.1038/333866a0openalex-snapshot

An anti-sense chalcone synthase gene in transgenic plants inhibits flower pigmentation

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Genome sequence and analysis of the tuber crop potato

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The tomato genome sequence provides insights into fleshy fruit evolution

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The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution

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Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors

inferredcites →https://doi.org/10.1038/ncomms13295openalex-snapshot

Genome sequence and analysis of the Japanese morning glory Ipomoea nil

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Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce

inferredcites →https://doi.org/10.1038/ncomms4833openalex-snapshot

The tobacco genome sequence and its comparison with those of tomato and potato

inferredcites →https://doi.org/10.1038/ng.2877openalex-snapshot

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

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The genome of the stress-tolerant wild tomato species Solanum pennellii

inferredcites →https://doi.org/10.1038/ng.3565openalex-snapshot

A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution

inferredcites →https://doi.org/10.1038/nplants.2016.74openalex-snapshot

Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida

inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot

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inferredcites →https://doi.org/10.1038/s41438-017-0011-0openalex-snapshot

Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library

inferredcites →https://doi.org/10.1038/s41598-018-32472-5openalex-snapshot

Transcriptome Sequencing and Metabolism Analysis Reveals the role of Cyanidin Metabolism in Dark-red Onion (Allium cepa L.) Bulbs

inferredcites →https://doi.org/10.1038/srep19427openalex-snapshot

The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny

inferredcites →https://doi.org/10.1039/b909988nopenalex-snapshot

Structure and function of the chalcone synthase superfamily of plant type III polyketide synthases

inferredcites →https://doi.org/10.1046/j.1365-313x.1993.04061003.xopenalex-snapshot

Cloning and expression of flavonol synthase from Petunia hybrida

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Stilbene synthase gene expression causes changes in flower colour and male sterility in tobacco

inferredcites →https://doi.org/10.1046/j.1365-313x.1998.00029.xopenalex-snapshot

Production of yellow colour in flowers: redirection of flavonoid biosynthesis in Petunia

inferredcites →https://doi.org/10.1073/pnas.1319032110openalex-snapshot

Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing

inferredcites →https://doi.org/10.1073/pnas.1400975111openalex-snapshot

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

inferredcites →https://doi.org/10.1073/pnas.1700073114openalex-snapshot

Wild tobacco genomes reveal the evolution of nicotine biosynthesis

inferredcites →https://doi.org/10.1073/pnas.1708621114openalex-snapshot

Genome of wild olive and the evolution of oil biosynthesis

inferredcites →https://doi.org/10.1073/pnas.93.17.9033openalex-snapshot

Duplication and functional divergence in the chalcone synthase gene family of Asteraceae: evolution with substrate change and catalytic simplification.

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

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Draft Genome Sequence of Eggplant (Solanum melongena L.): the Representative Solanum Species Indigenous to the Old World

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Transcriptome sequencing and metabolite analysis reveals the role of delphinidin metabolism in flower colour in grape hyacinth

inferredcites →https://doi.org/10.1093/molbev/msr109openalex-snapshot

Gene Loss and Parallel Evolution Contribute to Species Difference in Flower Color

inferredcites →https://doi.org/10.1093/molbev/mss130openalex-snapshot

Loss of Two Introns from the Magnolia tripetala Mitochondrial cox2 Gene Implicates Horizontal Gene Transfer and Gene Conversion as a Novel Mechanism of Intron Loss

inferredcites →https://doi.org/10.1093/molbev/mss255openalex-snapshot

Functional Evolution of an Anthocyanin Pathway Enzyme during a Flower Color Transition

inferredcites →https://doi.org/10.1093/nar/14.13.5229openalex-snapshot

Floral tissue ofPetunia hybrida(V30) expresses only one member of the chalcone synthase multigene family

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003997openalex-snapshot

Duplication and Adaptive Evolution of the Chalcone Synthase Genes of Dendranthema (Asteraceae)

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

inferredcites →https://doi.org/10.1093/pcp/pcm131openalex-snapshot

Engineering of the Rose Flavonoid Biosynthetic Pathway Successfully Generated Blue-Hued Flowers Accumulating Delphinidin

inferredcites →https://doi.org/10.1094/mpmi-06-12-0148-taopenalex-snapshot

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

inferredcites →https://doi.org/10.1098/rstb.2012.0432openalex-snapshot

Flower colour and cytochromes P450

inferredcites →https://doi.org/10.1104/pp.112.202705openalex-snapshot

Structural, Functional, and Evolutionary Analysis of the Unusually Large Stilbene Synthase Gene Family in Grapevine

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Anthocyanin Pigment Composition of Red Radish Cultivars as Potential Food Colorants

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Anthocyanin Pigment Composition of Red‐fleshed Potatoes

inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03447.xopenalex-snapshot

Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids

inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04459.xopenalex-snapshot

Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

inferredcites →https://doi.org/10.1111/nph.14830openalex-snapshot

A novel R3 MYB transcriptional repressor associated with the loss of floral pigmentation in Iochroma

inferredcites →https://doi.org/10.1126/science.1255274openalex-snapshot

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

inferredcites →https://doi.org/10.1146/annurev.arplant.57.032905.105248openalex-snapshot

THE GENETICS AND BIOCHEMISTRY OF FLORAL PIGMENTS

inferredcites →https://doi.org/10.1186/1471-2148-13-214openalex-snapshot

A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

inferredcites →https://doi.org/10.1186/1471-2164-11-562openalex-snapshot

Expansion and subfunctionalisation of flavonoid 3',5'-hydroxylases in the grapevine lineage

inferredcites →https://doi.org/10.1186/gb-2013-14-6-r60openalex-snapshot

Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis

inferredcites →https://doi.org/10.1186/s12864-017-3791-6openalex-snapshot

A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency

inferredcites →https://doi.org/10.1186/s12870-014-0225-3openalex-snapshot

Deep resequencing reveals allelic variation in Sesamum indicum

inferredcites →https://doi.org/10.1186/s12870-014-0262-yopenalex-snapshot

Transcript profiling of structural genes involved in cyanidin-based anthocyanin biosynthesis between purple and non-purple carrot (Daucus carotaL.) cultivars reveals distinct patterns

inferredcites →https://doi.org/10.1186/s13742-016-0134-5openalex-snapshot

Genome sequence of the olive tree, Olea europaea

inferredcites →https://doi.org/10.1271/bbb.67.161openalex-snapshot

Selective Accumulation of Delphinidin Derivatives in Tobacco Using a Putative Flavonoid 3′,5′-Hydroxylase cDNA fromCampanula medium

inferredcites →https://doi.org/10.1371/journal.pone.0081173openalex-snapshot

The Genetic Basis of a Rare Flower Color Polymorphism in Mimulus lewisii Provides Insight into the Repeatability of Evolution

inferredcites →https://doi.org/10.1371/journal.pone.0190246openalex-snapshot

A wild ‘albino’ bilberry (Vaccinium myrtillus L.) from Slovenia shows three bottlenecks in the anthocyanin pathway and significant differences in the expression of several regulatory genes compared to the common blue berry type

inferredcites →https://doi.org/10.1385/1-59745-130-4:143openalex-snapshot

Nicotiana (Nicotiana tobaccum, Nicotiana benthamiana)

inferredcites →https://doi.org/10.17660/actahortic.2007.745.11openalex-snapshot

A SUMMARY OF MOLECULAR SYSTEMATIC RESEARCH IN SOLANACEAE: 1982-2006

inferredcites →https://doi.org/10.3389/fchem.2018.00052openalex-snapshot

Anthocyanin Biosynthesis and Degradation Mechanisms in Solanaceous Vegetables: A Review

inferredcites →https://doi.org/10.3389/fpls.2012.00222openalex-snapshot

Flavonoids: biosynthesis, biological functions, and biotechnological applications

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Transcriptomics and Metabolite Analysis Reveals the Molecular Mechanism of Anthocyanin Biosynthesis Branch Pathway in Different Senecio cruentus Cultivars

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Related allopolyploids display distinct floral pigment profiles and transgressive pigments

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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A field investigation into potential reproductive and resistance advantages of purple-petalled plants in polymorphic populations of horsenettle (Solanum carolinense)

inferred← citeshttps://doi.org/10.1016/j.cj.2022.10.004openalex-snapshot

Flavanone and flavonoid hydroxylase genes regulate fiber color formation in naturally colored cotton

inferred← citeshttps://doi.org/10.1016/j.heliyon.2021.e07907openalex-snapshot

Traditionally used edible Solanaceae plants of Mizoram, India have high antioxidant and antimicrobial potential for effective phytopharmaceutical and nutraceutical formulations

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Cold-induced anthocyanin regulation in horticultural crops: mechanistic basis, trade-offs, and decision-driven temperature management in plant factories

inferred← citeshttps://doi.org/10.1093/pcp/pcad108openalex-snapshot

CstPIF4 Integrates Temperature and Circadian Signals and Interacts with CstMYB16 to Repress Anthocyanins in Crocus

inferred← citeshttps://doi.org/10.1134/s1021443724604877openalex-snapshot

Overexpression of Aterf022 Gene Regulates Fruit Ripening and Nutritional Quality in Tomato Solanum lycopersicum

inferred← citeshttps://doi.org/10.1134/s1022795425700322openalex-snapshot

Effect of Cold Stress on Anthocyanin Content and Anthocyanin Biosynthesis Pathway Gene Expression in Potato Solanum tuberosum L. Leaves

inferred← citeshttps://doi.org/10.1371/journal.pone.0250861openalex-snapshot

Pathway-based analysis of anthocyanin diversity in diploid potato

inferred← citeshttps://doi.org/10.1371/journal.pone.0273982openalex-snapshot

Uncovering anthocyanin diversity in potato landraces (Solanum tuberosum L. Phureja) using RNA-seq

inferred← citeshttps://doi.org/10.32854/agrop.v15i2.2094openalex-snapshot

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inferred← citeshttps://doi.org/10.3389/fpls.2022.1085395openalex-snapshot

Physiological and transcriptome profiling revealed defense networks during Cladosporium fulvum and tomato interaction at the early stage

inferred← citeshttps://doi.org/10.3389/fpls.2022.830931openalex-snapshot

Modifying Anthocyanins Biosynthesis in Tomato Hairy Roots: A Test Bed for Plant Resistance to Ionizing Radiation and Antioxidant Properties in Space

inferred← citeshttps://doi.org/10.3390/agriculture13020420openalex-snapshot

Growth Inhibitory Activities and Feeding Deterrence of Solanaceae-Based Derivatives on Fall Armyworm

inferred← citeshttps://doi.org/10.3390/agronomy13092290openalex-snapshot

Integrated Transcriptomics and Metabolomics Analysis Reveal Anthocyanin Biosynthesis for Petal Color Formation in Catharanthus roseus

inferred← citeshttps://doi.org/10.3390/genes15081041openalex-snapshot

Integrated Analyses of Metabolome and RNA-seq Data Revealing Flower Color Variation in Ornamental Rhododendron simsii Planchon

inferred← citeshttps://doi.org/10.3390/horticulturae7080259openalex-snapshot

Fruit Colour and Novel Mechanisms of Genetic Regulation of Pigment Production in Tomato Fruits

inferred← citeshttps://doi.org/10.3390/ijms222011116openalex-snapshot

Light Induced Regulation Pathway of Anthocyanin Biosynthesis in Plants

inferred← citeshttps://doi.org/10.3390/ijms23158216openalex-snapshot

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Metabolome and Transcriptome Analysis Reveals Putative Genes Involved in Anthocyanin Accumulation and Coloration in White and Pink Tea (Camellia sinensis) Flower

inferred← citeshttps://doi.org/10.5204/thesis.eprints.230763openalex-snapshot

Unravelling genes responsible for successful anthocyanin production in Nicotiana benthamiana

inferred← citeshttps://doi.org/10.7717/peerj.16124openalex-snapshot

Genome-wide identification of putative dihydroflavonol 4-reductase (DFR) gene family in eight Solanaceae species and expression analysis in Solanum lycopersicum

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