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Comparative Analysis of Chloroplast Genome Between Widely Distributed and Locally Distributed Lysionotus (Gesneriaceae) Related Members

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
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Phytogeographic aspects of Lysionotus pauciflorus sensu lato (Gesneriaceae) in the China, Japan and Taiwan regions: phylogenetic and morphological relationships and taxonomic consequences
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Plant adaptability in karst regions
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Karst landscapes of China: patterns, ecosystem processes and services
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Gene arrangement, phylogeny and divergence time estimation of mitogenomes in Thrips
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The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
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Soil moisture responses under different vegetation types to winter rainfall events in a humid karst region
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Characterization of the complete chloroplast genome sequence of Lysionotus pauciflorus (Gesneriaceae)
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The Third Revolution in Sequencing Technology
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Old World Gesneriaceae. IV. Notes on Didymocarpus and Lysionotus
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Global diets link environmental sustainability and human health
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ModelFinder: fast model selection for accurate phylogenetic estimates
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Phylogenomics reveals widespread hybridization and polyploidization in Henckelia (Gesneriaceae)
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Gepard: a rapid and sensitive tool for creating dotplots on genome scale
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
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The Sequence Alignment/Map format and SAMtools
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Bandage: interactive visualization of de novo genome assemblies
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Structural and Content Diversity of Mitochondrial Genome in Beet: A Comparative Genomic Analysis
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ISOLATION BY DISTANCE
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Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection
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PAML 4: Phylogenetic Analysis by Maximum Likelihood
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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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GeSeq – versatile and accurate annotation of organelle genomes
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CPGAVAS2, an integrated plastome sequence annotator and analyzer
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Codon-Substitution Models for Detecting Molecular Adaptation at Individual Sites Along Specific Lineages
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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
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PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/jse.13156openalex-snapshot
Miocene climatic fluctuations likely explain the species diversification of Lysionotus (Gesneriaceae) in Pan‐Himalaya
inferredcites →https://doi.org/10.1111/mec.14149openalex-snapshot
Molecular adaptation in the world's deepest‐living animal: Insights from transcriptome sequencing of the hadal amphipod Hirondellea gigas
inferredcites →https://doi.org/10.1111/njb.02912openalex-snapshot
Lysionotus coccinus (Gesneriaceae), a new species from southwestern Yunnan, China
inferredcites →https://doi.org/10.1126/science.1102033openalex-snapshot
Very Low Gene Duplication Rate in the Yeast Genome
inferredcites →https://doi.org/10.1126/science.174.4008.468openalex-snapshot
Agricultural Origins: Centers and Noncenters
inferredcites →https://doi.org/10.1126/science.277.5329.1063openalex-snapshot
Seed Banks and Molecular Maps: Unlocking Genetic Potential from the Wild
inferredcites →https://doi.org/10.1146/annurev.arplant.57.032905.105350openalex-snapshot
STRUCTURE AND FUNCTION OF PHOTOSYSTEMS I AND II
inferredcites →https://doi.org/10.1186/1471-2148-14-23openalex-snapshot
From algae to angiosperms–inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes
inferredcites →https://doi.org/10.1186/gb-2003-4-3-209openalex-snapshot
Genomics and chloroplast evolution: what did cyanobacteria do for plants?
inferredcites →https://doi.org/10.1186/s12864-021-07484-7openalex-snapshot
The complete chloroplast genome of Stauntonia chinensis and compared analysis revealed adaptive evolution of subfamily Lardizabaloideae species in China
inferredcites →https://doi.org/10.1186/s12870-018-1351-0openalex-snapshot
Genetic diversity analysis of cultivated and wild grapevine (Vitis vinifera L.) accessions around the Mediterranean basin and Central Asia
inferredcites →https://doi.org/10.1186/s12870-020-02793-7openalex-snapshot
Comparative plastid genomics of four Pilea (Urticaceae) species: insight into interspecific plastid genome diversity in Pilea
inferredcites →https://doi.org/10.1186/s12870-020-02800-xopenalex-snapshot
Comparative genomic analysis of Polypodiaceae chloroplasts reveals fine structural features and dynamic insertion sequences
inferredcites →https://doi.org/10.1186/s12870-022-03465-4openalex-snapshot
The complete chloroplast genome of Onobrychis gaubae (Fabaceae-Papilionoideae): comparative analysis with related IR-lacking clade species
inferredcites →https://doi.org/10.1186/s12870-022-03529-5openalex-snapshot
Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences
inferredcites →https://doi.org/10.1186/s12870-022-03608-7openalex-snapshot
Fifteen complete chloroplast genomes of Trapa species (Trapaceae): insight into genome structure, comparative analysis and phylogenetic relationships
inferredcites →https://doi.org/10.1186/s12870-022-03722-6openalex-snapshot
Genetic basis of maturity time is independent from that of flowering time and contributes to ecotype differentiation in common buckwheat (Fagopyrum esculentum Moench)
inferredcites →https://doi.org/10.1186/s12870-022-04000-1openalex-snapshot
Comparative and phylogenetic analysis based on chloroplast genome of Heteroplexis (Compositae), a protected rare genus
inferredcites →https://doi.org/10.1186/s12870-023-04212-zopenalex-snapshot
Genetic diversity, population genetic structure and gene flow in the rare and endangered wild plant Cypripedium macranthos revealed by genotyping-by-sequencing
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Phylogeography of cultivated and wild ophiopogon japonicus based on chloroplast DNA: exploration of the origin and sustainable cultivation
inferredcites →https://doi.org/10.1186/s13059-020-02154-5openalex-snapshot
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
inferredcites →https://doi.org/10.1371/journal.pbio.1001883openalex-snapshot
Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding
inferredcites →https://doi.org/10.1371/journal.pone.0163962openalex-snapshot
SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation
inferredcites →https://doi.org/10.1371/journal.pone.0190801openalex-snapshot
Discovery of a diverse cave flora in China
inferredcites →https://doi.org/10.1525/bio.2011.61.7.10openalex-snapshot
Crop Wild Relatives—Undervalued, Underutilized and under Threat?
inferredcites →https://doi.org/10.3732/ajb.1100335openalex-snapshot
Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
inferredcites →https://doi.org/10.3732/ajb.92.1.142openalex-snapshot
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
inferredcites →https://doi.org/10.3897/phytokeys.162.52174openalex-snapshot
Two new species of Oreocharis (Gesneriaceae) from karst regions in Yunnan and notes on O. tetraptera and O. brachypoda from China
inferredcites →https://doi.org/10.5281/zenodo.15899908openalex-snapshot
A new genus of Gesneriaceae in China and the transfer of Briggsia species to other genera
inferredcites →https://doi.org/10.6165/tai.2022.67.455openalex-snapshot
Confirmation of the taxonomic status of Lysionotus pterocaulis (Gesneriaceae) supported by morphological and molecular evidence
inferredcites →https://doi.org/10.7717/peerj.15326openalex-snapshot
CPJSdraw: analysis and visualization of junction sites of chloroplast genomes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/phytokeys.272.165184zenodo-depositor-declared
An updated checklist of Lysionotus (Gesneriaceae) and two new species from southwestern China
inferred← citeshttps://doi.org/10.21203/rs.3.rs-10793726/v1openalex-snapshot
Chloroplast Genome-Based Characterization of Cytochrome b₆f Complex Encoding Genes in the Indonesian Strawberry (Fragaria × ananassa 'Mencir')
inferred← citeshttps://doi.org/10.3390/biology15040352openalex-snapshot
Comparative Chloroplast Genome and Phylogenetic Analyses of Anna and Lysionotus (Gesneriaceae) Along the Sino-Vietnamese Border
inferred← citeshttps://doi.org/10.3390/cimb48060562openalex-snapshot
Development of Chloroplast Microsatellite Markers and Assessment of Genetic Diversity and Population Structure of Sophora tonkinensis Gagnep. in Southwestern China
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