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Comparative Mitogenomic Analyses of Hydropsychidae Revealing the Novel Rearrangement of Protein-Coding Gene and tRNA (Trichoptera: Annulipalpia)

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Out of Africa: Biogeography and diversification of the pantropical pond skater genus Limnogonus Stål, 1868 (Hemiptera: Gerridae)

inferredcites →https://doi.org/10.1002/ece3.8957openalex-snapshot

Mitogenomes provide new insights of evolutionary history of Boreheptagyiini and Diamesini (Diptera: Chironomidae: Diamesinae)

inferredcites →https://doi.org/10.1007/978-1-4684-4988-4_2openalex-snapshot

The Mitochondrial Genome of Animals

inferredcites →https://doi.org/10.1016/j.gene.2014.07.052openalex-snapshot

Complete mitochondrial genomes of five skippers (Lepidoptera: Hesperiidae) and phylogenetic reconstruction of Lepidoptera

inferredcites →https://doi.org/10.1016/j.gene.2015.10.050openalex-snapshot

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Comparative mitogenomic analysis of species in the subfamily Amphinemurinae (Plecoptera: Nemouridae) reveal conserved mitochondrial genome organization

inferredcites →https://doi.org/10.1016/j.ijbiomac.2020.07.149openalex-snapshot

Evolution of tRNA gene rearrangement in the mitochondrial genome of ichneumonoid wasps (Hymenoptera: Ichneumonoidea)

inferredcites →https://doi.org/10.1016/j.ympev.2011.12.021openalex-snapshot

Phylogenetically informative rearrangements in mitochondrial genomes of Coleoptera, and monophyly of aquatic elateriform beetles (Dryopoidea)

inferredcites →https://doi.org/10.1016/j.ympev.2017.09.025openalex-snapshot

Compositional heterogeneity in true bug mitochondrial phylogenomics

inferredcites →https://doi.org/10.1016/s0169-5347(00)01967-4openalex-snapshot

Rare genomic changes as a tool for phylogenetics

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tRNA punctuation model of RNA processing in human mitochondria

inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot

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inferredcites →https://doi.org/10.1038/s41598-020-57705-4openalex-snapshot

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inferredcites →https://doi.org/10.1080/106351501753462812openalex-snapshot

Phylogeny of Trichoptera (Caddisflies): Characterization of Signal and Noise Within Multiple Datasets

inferredcites →https://doi.org/10.1080/23802359.2017.1372728openalex-snapshot

The complete mitochondrial genome of the North American caddisfly Anabolia bimaculata (Insecta: Trichoptera: Limnephilidae)

inferredcites →https://doi.org/10.1080/23802359.2017.1398619openalex-snapshot

The complete mitochondrial genome of the long-horned caddisfly Triaenodes tardus (Insecta: Trichoptera: Leptoceridae)

inferredcites →https://doi.org/10.1093/bioinformatics/btm468openalex-snapshot

CREx: inferring genomic rearrangements based on common intervals

inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

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IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msx248openalex-snapshot

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot

UFBoot2: Improving the Ultrafast Bootstrap Approximation

inferredcites →https://doi.org/10.1093/molbev/msy096openalex-snapshot

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

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Mitochondrial Genomics Reveals Shared Phylogeographic Patterns and Demographic History among Three Periodical Cicada Species Groups

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Animal mitochondrial genomes

inferredcites →https://doi.org/10.1093/nar/gkw955openalex-snapshot

NOVOPlasty: de novo assembly of organelle genomes from whole genome data

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MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization

inferredcites →https://doi.org/10.1093/nar/gkz239openalex-snapshot

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

inferredcites →https://doi.org/10.1093/nar/gkz833openalex-snapshot

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

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Complete mtDNA Sequences of Two Millipedes Suggest a New Model for Mitochondrial Gene Rearrangements: Duplication and Nonrandom Loss

inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot

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inferredcites →https://doi.org/10.1093/sysbio/syt022openalex-snapshot

PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment

inferredcites →https://doi.org/10.1093/sysbio/syx068openalex-snapshot

Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation

inferredcites →https://doi.org/10.1093/sysbio/syy062openalex-snapshot

Mitochondrial Genome Fragmentation Unites the Parasitic Lice of Eutherian Mammals

inferredcites →https://doi.org/10.1093/sysbio/syz051openalex-snapshot

GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments

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inferredcites →https://doi.org/10.1111/eva.12694openalex-snapshot

Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities

inferredcites →https://doi.org/10.1111/syen.12274openalex-snapshot

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inferredcites →https://doi.org/10.1111/syen.12290openalex-snapshot

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inferredcites →https://doi.org/10.1111/syen.12357openalex-snapshot

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inferredcites →https://doi.org/10.1111/syen.12422openalex-snapshot

A multigene phylogeny and timeline for Trichoptera (Insecta)

inferredcites →https://doi.org/10.1111/syen.12431openalex-snapshot

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inferredcites →https://doi.org/10.1111/syen.12504openalex-snapshot

Mitochondrial genomes within bark lice (Insecta: Psocodea: Psocomorpha) reveal novel gene rearrangements containing phylogenetic signal

inferredcites →https://doi.org/10.1111/syen.12550openalex-snapshot

Nuclear copies of mitochondrial DNA as a potential problem for phylogenetic and population genetic studies of Odonata

inferredcites →https://doi.org/10.1111/syen.12575openalex-snapshot

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inferredcites →https://doi.org/10.1146/annurev-ento-011613-162007openalex-snapshot

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inferredcites →https://doi.org/10.1146/annurev.es.18.110187.001413openalex-snapshot

EVOLUTION OF ANIMAL MITOCHONDRIAL DNA: RELEVANCE FOR POPULATION BIOLOGY AND SYSTEMATICS

inferredcites →https://doi.org/10.11646/zootaxa.4374.1.1openalex-snapshot

Descriptions of larvae of three species of Hydropsyche (Trichoptera, Hydropsychidae) from China

inferredcites →https://doi.org/10.11646/zootaxa.4858.3.3openalex-snapshot

Descriptions of larvae of three species of Hydropsyche Pictet 1834 (Trichoptera, Hydropsychidae) from China

inferredcites →https://doi.org/10.1186/1471-2105-15-294openalex-snapshot

AliGROOVE – visualization of heterogeneous sequence divergence within multiple sequence alignments and detection of inflated branch support

inferredcites →https://doi.org/10.1186/1471-2164-11-371openalex-snapshot

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inferredcites →https://doi.org/10.1186/s12864-017-4102-yopenalex-snapshot

Mitochondrial genomes of blister beetles (Coleoptera, Meloidae) and two large intergenic spacers in Hycleus genera

inferredcites →https://doi.org/10.1186/s12983-014-0081-xopenalex-snapshot

FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies

inferredcites →https://doi.org/10.1371/journal.pone.0029419openalex-snapshot

The Complete Mitochondrial Genome and Novel Gene Arrangement of the Unique-Headed Bug Stenopirates sp. (Hemiptera: Enicocephalidae)

inferredcites →https://doi.org/10.1371/journal.pone.0163962openalex-snapshot

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

inferredcites →https://doi.org/10.2307/1467812openalex-snapshot

Phylogenetic Relationships among Subfamily Groups in the Hydropsychidae (Trichoptera) with Diagnoses of the Smicrideinae, New Status, and the Hydropsychinae

inferredcites →https://doi.org/10.3109/19401736.2015.1110803openalex-snapshot

The mitogenome of Hydropsyche pellucidula (Hydropsychidae): first gene arrangement in the insect order Trichoptera

inferredcites →https://doi.org/10.3138/9781442623606openalex-snapshot

Larvae of the North American Caddisfly Genera (Trichoptera)

inferredcites →https://doi.org/10.3390/ijms17060951openalex-snapshot

Duplication and Remolding of tRNA Genes in the Mitochondrial Genome of Reduvius tenebrosus (Hemiptera: Reduviidae)

inferredcites →https://doi.org/10.3390/insects12020170openalex-snapshot

Comparative Mitogenomic Analysis of Heptageniid Mayflies (Insecta: Ephemeroptera): Conserved Intergenic Spacer and tRNA Gene Duplication

inferredcites →https://doi.org/10.3390/insects12111025openalex-snapshot

The Mitochondrial Genomes of 18 New Pleurosticti (Coleoptera: Scarabaeidae) Exhibit a Novel trnQ-NCR-trnI-trnM Gene Rearrangement and Clarify Phylogenetic Relationships of Subfamilies within Scarabaeidae

inferredcites →https://doi.org/10.3390/insects13070585openalex-snapshot

Positive Correlation of the Gene Rearrangements and Evolutionary Rates in the Mitochondrial Genomes of Thrips (Insecta: Thysanoptera)

inferredcites →https://doi.org/10.3897/zookeys.654.9516openalex-snapshot

Catalog of the Neotropical Trichoptera (Caddisflies)

inferredcites →https://doi.org/10.3934/genet.2018.1.1openalex-snapshot

Our love-hate relationship with DNA barcodes, the Y2K problem, and the search for next generation barcodes

inferredcites →https://doi.org/10.5281/zenodo.15145663openalex-snapshot

Table 1 in A new Gammarus species from Xinjiang Uygur Autonomous Region (China) with a key to Xinjiang freshwater gammarids (Crustacea, Amphipoda, Gammaridae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/bdj.13.e151321zenodo-depositor-declared

Descriptions of hitherto unknown larvae of the genus Hydropsyche Pictet, 1834 from China (Trichoptera, Hydropsychidae)

inferred← citeshttps://doi.org/10.3897/dez.73.192129zenodo-depositor-declared

Integrative taxonomy revealed four new species and four new records of the genus Hydropsyche from China (Trichoptera, Hydropsychidae)

inferred← citeshttps://doi.org/10.3897/zookeys.1247.144896zenodo-depositor-declared

First mitogenome of the family Putoidae (Hemiptera, Coccomorpha) and its phylogenetic implications

inferred← citeshttps://doi.org/10.1002/arch.22051openalex-snapshot

New data on mitogenomes of Thienemanniella Kieffer, 1911 (Diptera: Chironomidae, Orthocladiinae)

inferred← citeshttps://doi.org/10.1002/arch.22067openalex-snapshot

New mitogenomes from the genus Cricotopus (Diptera: Chironomidae, Orthocladiinae): Characterization and phylogenetic implications

inferred← citeshttps://doi.org/10.1002/ece3.72309openalex-snapshot

Exploring the Mitogenomes of Acroneuriinae: The First Report of Gene Rearrangements in Plecoptera Species and Phylogenetic Analyses of Perlidae

inferred← citeshttps://doi.org/10.1080/00305316.2024.2349890openalex-snapshot

First report of the complete mitogenome of Hylemya nigrimana (Meigen, 1826) from Oriental China (Diptera: Anthomyiidae)

inferred← citeshttps://doi.org/10.1080/23802359.2025.2482275openalex-snapshot

First report of the complete mitochondrial genome of Glyptotendipes pallens (Meigen, 1804) (Diptera: Chironomidae) from Hebei Province, China

inferred← citeshttps://doi.org/10.1186/s12864-025-12170-zopenalex-snapshot

The first complete mitochondrial genome sequences of an ancient orphan evolutionary lineage of Eumolpinae leaf beetles endemic to the South Pacific

inferred← citeshttps://doi.org/10.3389/fgene.2023.1132606openalex-snapshot

Comparative mitogenomes reveal diverse and novel gene rearrangements in the genus Meteorus (Hymenoptera: Braconidae)

inferred← citeshttps://doi.org/10.3390/ani15152234openalex-snapshot

Comparative Analyses Reveal Mitogenome Characteristics of Halictidae and Novel Rearrangement (Hymenoptera: Apoidea: Anthophila)

inferred← citeshttps://doi.org/10.3390/biology14091178openalex-snapshot

Mitogenomic Insights into Orthocladiinae (Diptera: Chironomidae): Structural Diversity and Phylogenetic Implications

inferred← citeshttps://doi.org/10.3390/d17020096openalex-snapshot

New Mitogenomes of the Harnischia Generic Complex (Diptera: Chironomidae) and Their Implication in Phylogenetics

inferred← citeshttps://doi.org/10.3390/genes15070842openalex-snapshot

The First Three Mitochondrial Genomes for the Characterization of the Genus Egeirotrioza (Hemiptera: Triozidae) and Phylogenetic Implications

inferred← citeshttps://doi.org/10.3390/genes15101281openalex-snapshot

Complete Mitochondrial Genome of Tanypus chinensis and Tanypus kraatzi (Diptera: Chironomidae): Characterization and Phylogenetic Implications

inferred← citeshttps://doi.org/10.3390/insects13121101openalex-snapshot

New Mitogenome Features of Philopotamidae (Insecta: Trichoptera) with Two New Species of Gunungiella

inferred← citeshttps://doi.org/10.3390/insects13121164openalex-snapshot

Comparative Analysis of Mitogenomes of Chironomus (Diptera: Chironomidae)

inferred← citeshttps://doi.org/10.3390/insects14030238openalex-snapshot

New Mitogenomes of the Polypedilum Generic Complex (Diptera: Chironomidae): Characterization and Phylogenetic Implications

inferred← citeshttps://doi.org/10.3390/insects15090642openalex-snapshot

Phylogenetic and Comparative Analysis of Cryptochironomus, Demicryptochironomus and Harnischia Inferred from Mitogenomes (Diptera: Chironomidae)

inferred← citeshttps://doi.org/10.3390/insects15090646openalex-snapshot

Characteristics and Comparative Analysis of Six Mitogenomes of Genus Kiefferulus Goetghebuer, 1922 (Diptera: Chironomidae)

inferred← citeshttps://doi.org/10.3390/insects15120973openalex-snapshot

Mitogenomics Provide New Phylogenetic Insights of the Family Apataniidae (Trichoptera: Integripalpia)

inferred← citeshttps://doi.org/10.3390/insects16020178openalex-snapshot

New Mitogenomes from the Genus Ablabesmyia (Diptera: Chironomidae, Tanypodiinae): Characterization and Phylogenetic Implications

inferred← citeshttps://doi.org/10.3390/insects16050536openalex-snapshot

Phylogenetic Analysis of the Family Lepidostomatidae (Trichoptera: Integripalpia) Using Whole Mitochondrial Genomes

inferred← citeshttps://doi.org/10.3390/insects17080857openalex-snapshot

A DNA Barcode Reference Library for Trichoptera of Jingpo Lake: Taxonomic Diversity and Molecular Identification Basics

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