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Comparative Analysis of the Mitochondrial Genome Sequences of Diaporthe longicolla (syn. Phomopsis longicolla) Isolates Causing Phomopsis Seed Decay in Soybean

https://doi.org/10.3390/jof10080570
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf02577833openalex-snapshot
Developing soybean varieties with genetic resistance toPhomopsis spp.
inferredcites →https://doi.org/10.1007/s00122-002-1031-0openalex-snapshot
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
inferredcites →https://doi.org/10.1007/s00253-018-9082-6openalex-snapshot
Comparative mitogenomics reveals large-scale gene rearrangements in the mitochondrial genome of two Pleurotus species
inferredcites →https://doi.org/10.1007/s00253-018-9350-5openalex-snapshot
Fungal mitochondrial genomes and genetic polymorphisms
inferredcites →https://doi.org/10.1007/s00294-002-0306-yopenalex-snapshot
Repetitive DNA elements in fungi (Mycota): impact on genomic architecture and evolution
inferredcites →https://doi.org/10.1016/j.ijbiomac.2019.12.056openalex-snapshot
The mitochondrial genome of Morchella importuna (272.2 kb) is the largest among fungi and contains numerous introns, mitochondrial non-conserved open reading frames and repetitive sequences
inferredcites →https://doi.org/10.1016/j.tig.2003.10.012openalex-snapshot
Mitochondrial genomes: anything goes
inferredcites →https://doi.org/10.1016/j.tig.2007.01.006openalex-snapshot
Mitochondrial introns: a critical view
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0168-9525(00)02024-2openalex-snapshot
EMBOSS: The European Molecular Biology Open Software Suite
inferredcites →https://doi.org/10.1038/s41598-020-73461-xopenalex-snapshot
The complete mitochondrial genome of medicinal fungus Taiwanofungus camphoratus reveals gene rearrangements and intron dynamics of Polyporales
inferredcites →https://doi.org/10.1038/srep13892openalex-snapshot
Complete mitochondrial genome of the medicinal fungus Ophiocordyceps sinensis
inferredcites →https://doi.org/10.1080/00275514.1985.12025139openalex-snapshot
A New Phomopsis Species from Soybean
inferredcites →https://doi.org/10.1080/23802359.2020.1844094openalex-snapshot
The complete mitogenome of Diaporthe nobilis
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/gbe/evu028openalex-snapshot
High Variability of Mitochondrial Gene Order among Fungi
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/molbev/msx248openalex-snapshot
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
Tandem repeats finder: a program to analyze DNA sequences
inferredcites →https://doi.org/10.1093/nar/29.22.4633openalex-snapshot
REPuter: the manifold applications of repeat analysis on a genomic scale
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1094/9780890544754openalex-snapshot
Compendium of Soybean Diseases and Pests, Fifth Edition
inferredcites →https://doi.org/10.1094/pd-77-0329openalex-snapshot
Phomopsis Seed Decay of Soybeans- A Prototype for Studying Seed Disease
inferredcites →https://doi.org/10.1094/pdis-02-17-0204-reopenalex-snapshot
Evaluation of Commercial Soybean Cultivars for Reaction to Phomopsis Seed Decay
inferredcites →https://doi.org/10.1094/pdis-04-14-0429-reopenalex-snapshot
Evaluation of Diverse Soybean Germplasm for Resistance to Phomopsis Seed Decay
inferredcites →https://doi.org/10.1094/pdis-94-8-1035openalex-snapshot
Aggressiveness of Phomopsis longicolla and Other Phomopsis spp. on Soybean
inferredcites →https://doi.org/10.1094/pdis.2001.85.9.1031aopenalex-snapshot
First Report of Phomopsis longicolla from Velvetleaf Causing Stem Lesions on Inoculated Soybean and Velvetleaf Plants
inferredcites →https://doi.org/10.1094/phyto-68-1684openalex-snapshot
Quality Losses in Phomopsis-Infected Soybean Seeds
inferredcites →https://doi.org/10.1094/phytofr-10-20-0027-aopenalex-snapshot
Mitochondrial Genome Resource of Phomopsis longicolla, a Fungus Causing Phomopsis Seed Decay in Soybean
inferredcites →https://doi.org/10.1096/fasebj.7.1.8422962openalex-snapshot
Group I and group II introns.
inferredcites →https://doi.org/10.1111/1574-6968.12387openalex-snapshot
Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogenRhizoctonia solaniAG-3
inferredcites →https://doi.org/10.1111/j.1567-1364.2005.00018.xopenalex-snapshot
The mitochondrial genome of the wine yeastHanseniaspora uvarum: a unique genome organization among yeast/fungal counterparts
inferredcites →https://doi.org/10.1146/annurev.es.18.110187.002421openalex-snapshot
INTRASPECIFIC PHYLOGEOGRAPHY: The Mitochondrial DNA Bridge Between Population Genetics and Systematics
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2164-13-698openalex-snapshot
Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability
inferredcites →https://doi.org/10.1186/s12864-017-4075-xopenalex-snapshot
Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean
inferredcites →https://doi.org/10.1186/s12864-017-4116-5openalex-snapshot
Mitochondrial genomes reveal recombination in the presumed asexual Fusarium oxysporum species complex
inferredcites →https://doi.org/10.1186/s12866-015-0341-8openalex-snapshot
Analysis of the complete mitochondrial genome of Pochonia chlamydosporia suggests a close relationship to the invertebrate-pathogenic fungi in Hypocreales
inferredcites →https://doi.org/10.1186/s13007-018-0348-xopenalex-snapshot
Development of a seedling inoculation technique for rapid evaluation of soybean for resistance to Phomopsis longicolla under controlled conditions
inferredcites →https://doi.org/10.1186/s40064-016-3459-8openalex-snapshot
Identification of SNPs in a nonmodel macrofungus (Lepista nuda, Basidiomycota) through RAD sequencing
inferredcites →https://doi.org/10.1371/journal.pgen.1006108openalex-snapshot
Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
inferredcites →https://doi.org/10.1371/journal.pone.0014048openalex-snapshot
The Agaricus bisporus cox1 Gene: The Longest Mitochondrial Gene and the Largest Reservoir of Mitochondrial Group I Introns
inferredcites →https://doi.org/10.1371/journal.pone.0097141openalex-snapshot
Mitochondrial Genome of Phlebia radiata Is the Second Largest (156 kbp) among Fungi and Features Signs of Genome Flexibility and Recent Recombination Events
inferredcites →https://doi.org/10.1371/journal.pone.0107536openalex-snapshot
The 203 kbp Mitochondrial Genome of the Phytopathogenic Fungus Sclerotinia borealis Reveals Multiple Invasions of Introns and Genomic Duplications
inferredcites →https://doi.org/10.1371/journal.pone.0148525openalex-snapshot
Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae
inferredcites →https://doi.org/10.1371/journal.pone.0166086openalex-snapshot
Characterization of SNP and Structural Variations in the Mitochondrial Genomes of Tilletia indica and Its Closely Related Species Formed Basis for a Simple Diagnostic Assay
inferredcites →https://doi.org/10.1371/journal.pone.0207062openalex-snapshot
Annotation and analysis of the mitochondrial genome of Coniothyrium glycines, causal agent of red leaf blotch of soybean, reveals an abundance of homing endonucleases
inferredcites →https://doi.org/10.1371/journal.pone.0286519openalex-snapshot
Evaluation of exotic soybean accessions and their use in developing improved soybean lines with resistance to Phomopsis seed decay
inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot
BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
inferredcites →https://doi.org/10.1534/g3.119.400220openalex-snapshot
Genetic Diversity and Phylogenetic Relationships of Annual and Perennial Glycine Species
inferredcites →https://doi.org/10.2135/cropsci1993.0011183x003300010017xopenalex-snapshot
Inheritance of Phomopsis Seed Decay Resistance in Soybean PI 417479
inferredcites →https://doi.org/10.2135/cropsci2004.0525openalex-snapshot
Inheritance of Resistance to Phomopsis Seed Decay in Soybean PI 80837 and MO/PSD‐0259 (PI 562694)
inferredcites →https://doi.org/10.3198/jpr2008.01.0002crgopenalex-snapshot
Registration of Soybean Germplasm SS93‐6012 and SS93‐6181 Resistant to Phomopsis Seed Decay
inferredcites →https://doi.org/10.3389/fmicb.2020.00706openalex-snapshot
Mitochondrial Genome Polymorphisms in the Human Pathogenic Fungus Cryptococcus neoformans
inferredcites →https://doi.org/10.3389/fmicb.2020.01002openalex-snapshot
Diversity of Mobile Genetic Elements in the Mitogenomes of Closely Related Fusarium culmorum and F. graminearum sensu stricto Strains and Its Implication for Diagnostic Purposes
inferredcites →https://doi.org/10.3389/fmicb.2021.714651openalex-snapshot
Uncovering Diagnostic Value of Mitogenome for Identification of Cryptic Species Fusarium graminearum Sensu Stricto
inferredcites →https://doi.org/10.3389/fmicb.2021.787283openalex-snapshot
Global Characterization of Fungal Mitogenomes: New Insights on Genomic Diversity and Dynamism of Coding Genes and Accessory Elements
inferredcites →https://doi.org/10.3390/ijms17071049openalex-snapshot
Analysis of the Mitochondrial Genome in Hypomyces aurantius Reveals a Novel Twintron Complex in Fungi
inferredcites →https://doi.org/10.3767/003158511x603719openalex-snapshot
Resolving the Diaporthe species occurring on soybean in Croatia
inferredcites →https://doi.org/10.3852/09-198openalex-snapshot
Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae
inferredcites →https://doi.org/10.4161/rna.6.4.9334openalex-snapshot
Group I introns: Moving in new directions
inferredcites →https://doi.org/10.5772/1953openalex-snapshot
Soybean - Molecular Aspects of Breeding
inferredcites →https://doi.org/10.6026/97320630081171openalex-snapshot
Microsatellite repeat dynamics in mitochondrial genomes of phytopathogenic fungi: frequency and distribution in the genic and intergenic regions

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/imafungus.16.140572zenodo-depositor-declared
The six whole mitochondrial genomes for the Diaporthe species: features, evolution and phylogeny
inferred← citeshttps://doi.org/10.1016/j.jfca.2026.109043openalex-snapshot
Rapid and non-destructive identification of resistance levels to Phomopsis seed decay in soybean via near-infrared spectroscopy and machine learning algorithms
inferred← citeshttps://doi.org/10.1016/j.measurement.2026.122290openalex-snapshot
A non-destructive measurement method for soybean resistance levels to Phomopsis seed decay using multimodal spectral fusion and feature decorrelation network
inferred← citeshttps://doi.org/10.1371/journal.pone.0354166openalex-snapshot
Multi-year evaluation and release of improved soybean lines for resistance to Phomopsis seed decay
inferred← citeshttps://doi.org/10.3390/biology14111548openalex-snapshot
Pan-Mitogenome Construction, Intraspecific Variation, and Adaptive Evolution of the Plant Pathogenic Fungus Claviceps purpurea
inferred← citeshttps://doi.org/10.3390/jof12030207openalex-snapshot
Phylogenetic Relationships of Five Phallales Species Based on Mitochondrial Genome Analysis
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