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Whole-Genome Comparison Reveals Divergent IR Borders and Mutation Hotspots in Chloroplast Genomes of Herbaceous Bamboos (Bambusoideae: Olyreae)

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Phylogenetic inference and SSR characterization of tropical woody bamboos tribe Bambuseae (Poaceae: Bambusoideae) based on complete plastid genome sequences
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The monophyly of Chimonocalamus and conflicting gene trees in Arundinarieae (Poaceae: Bambusoideae) inferred from four plastid and two nuclear markers
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Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae)
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Phylogenetic estimation and morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on plastome phylogenomic analysis
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Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus
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Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions
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Phylogenomics and Plastome Evolution of the Chloridoid Grasses (Chloridoideae: Poaceae)
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Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants
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Recent Acceleration of Plastid Sequence and Structural Evolution Coincides with Extreme Mitochondrial Divergence in the Angiosperm Genus Silene
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The Complete Chloroplast Genome Sequence of Pelargonium × hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants
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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
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Chloroplast Phylogenomic Analyses Resolve Deep-Level Relationships of an Intractable Bamboo Tribe Arundinarieae (Poaceae)
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Complete nucleotide sequence of Dendrocalamus latiflorus and Bambusa oldhamii chloroplast genomes
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Localized hypermutation and associated gene losses in legume chloroplast genomes
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Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus
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Identification of chloroplast genome loci suitable for high‐resolution phylogeographic studies of C olocasia esculenta ( L .) S chott ( A raceae) and closely related taxa
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Identification of putative orthologous genes for the phylogenetic reconstruction of temperate woody bamboos ( P oaceae: B ambusoideae)
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Independent allopolyploidization events preceded speciation in the temperate and tropical woody bamboos
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Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots
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Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates
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Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae
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Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella
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Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes
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Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus
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Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis
inferredcites →https://doi.org/10.1186/s12864-016-2707-1openalex-snapshot
The floral transcriptomes of four bamboo species (Bambusoideae; Poaceae): support for common ancestry among woody bamboos
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High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)
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De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)
inferredcites →https://doi.org/10.1371/journal.pone.0064642openalex-snapshot
Phylogenomic Analyses of Nuclear Genes Reveal the Evolutionary Relationships within the BEP Clade and the Evidence of Positive Selection in Poaceae
inferredcites →https://doi.org/10.1371/journal.pone.0073053openalex-snapshot
Comparative Chloroplast Genomes of Camellia Species
inferredcites →https://doi.org/10.1371/journal.pone.0077965openalex-snapshot
Complete Chloroplast Genome of Sedum sarmentosum and Chloroplast Genome Evolution in Saxifragales
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The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos
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Chloroplast Genome Evolution in Actinidiaceae: clpP Loss, Heterogenous Divergence and Phylogenomic Practice
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Phylogeny of the Temperate Bamboos (Poaceae: Bambusoideae: Bambuseae) with an Emphasis on Arundinaria and Allies
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A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions
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The Complete Chloroplast Genome Sequences of Five Epimedium Species: Lights into Phylogenetic and Taxonomic Analyses
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Whole-Genome Comparison Reveals Heterogeneous Divergence and Mutation Hotspots in Chloroplast Genome of Eucommia ulmoides Oliver
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Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
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Plastome sequences of two New World bamboos— Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)—extend phylogenomic understanding of Bambusoideae
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Biogeography and phylogenomics of New World Bambusoideae (Poaceae), revisited
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The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
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Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III
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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Comparative Analysis of the Complete Chloroplast Genomes of Eight Ficus Species and Insights into the Phylogenetic Relationships of Ficus
inferred← citeshttps://doi.org/10.3390/plants8040087openalex-snapshot
Sequencing and Structural Analysis of the Complete Chloroplast Genome of the Medicinal Plant Lycium chinense Mill
inferred← citeshttps://doi.org/10.3390/plants9060748openalex-snapshot
The Complete Chloroplast Genome Sequencing and Comparative Analysis of Reed Canary Grass (Phalaris arundinacea) and Hardinggrass (P. aquatica)
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396147openalex-snapshot
Additional file 10 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396150openalex-snapshot
Additional file 11 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396153openalex-snapshot
Additional file 12 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396156openalex-snapshot
Additional file 13 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396159openalex-snapshot
Additional file 14 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396165openalex-snapshot
Additional file 15 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396168openalex-snapshot
Additional file 16 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396171openalex-snapshot
Additional file 17 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396183openalex-snapshot
Additional file 1 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396207openalex-snapshot
Additional file 2 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396210openalex-snapshot
Additional file 3 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396213openalex-snapshot
Additional file 4 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396216openalex-snapshot
Additional file 5 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396219openalex-snapshot
Additional file 6 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396222openalex-snapshot
Additional file 7 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396225openalex-snapshot
Additional file 8 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.19396228openalex-snapshot
Additional file 9 of Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships
inferred← citeshttps://doi.org/10.6084/m9.figshare.26724404openalex-snapshot
Additional file 1 of Testing plastomes and nuclear ribosomal DNA sequences as the next-generation DNA barcodes for species identification and phylogenetic analysis in Acer
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