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Exploring the Limits for Reduction of Plastid Genomes: A Case Study of the Mycoheterotrophic Orchids Epipogium aphyllum and Epipogium roseum

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Complete Gene Map of the Plastid-like DNA of the Malaria ParasitePlasmodium falciparum

inferredcites →https://doi.org/10.1007/0-387-27733-1_5openalex-snapshot

Maximum Likelihood Methods for Detecting Adaptive Protein Evolution

inferredcites →https://doi.org/10.1007/978-1-4614-5209-6_8openalex-snapshot

The Physiological Ecology of Mycoheterotrophy

inferredcites →https://doi.org/10.1007/978-94-011-5210-5_3openalex-snapshot

Deleterious mutation accumulation in organelle genomes

inferredcites →https://doi.org/10.1007/bf00449820openalex-snapshot

Deleted forms of plastid DNA in albino plants from cereal anther culture

inferredcites →https://doi.org/10.1007/s00294-003-0408-1openalex-snapshot

Maize BMS cultured cell lines survive with massive plastid gene loss

inferredcites →https://doi.org/10.1007/s10265-010-0395-5openalex-snapshot

Rate accelerations in nuclear 18S rDNA of mycoheterotrophic and parasitic angiosperms

inferredcites →https://doi.org/10.1007/s10267-004-0218-4openalex-snapshot

Isolation and identification of mycorrhizal fungi associating with an achlorophyllous plant, Epipogium roseum (Orchidaceae)

inferredcites →https://doi.org/10.1016/0031-9422(80)85004-7openalex-snapshot

Deviations from michaelis-menten behaviour of plant glutamate dehydrogenase with ammonium as variable substrate

inferredcites →https://doi.org/10.1016/j.protis.2013.09.006openalex-snapshot

The Chloroplast Genome of a Symbiodinium sp. Clade C3 Isolate

inferredcites →https://doi.org/10.1016/j.tplants.2005.12.004openalex-snapshot

Why are plastid genomes retained in non-photosynthetic organisms?

inferredcites →https://doi.org/10.1016/j.tplants.2010.01.004openalex-snapshot

The evolution of parasitism in plants

inferredcites →https://doi.org/10.1016/j.tree.2006.06.015openalex-snapshot

The genomic rate of adaptive evolution

inferredcites →https://doi.org/10.1016/j.ympev.2003.10.010openalex-snapshot

Utility of plastid psaB gene sequences for investigating intrafamilial relationships within Orchidaceae

inferredcites →https://doi.org/10.1016/j.ympev.2010.03.003openalex-snapshot

Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1016/s0169-5347(00)02084-xopenalex-snapshot

Reducing the genome size of organelles favours gene transfer to the nucleus

inferredcites →https://doi.org/10.1023/a:1017022522486openalex-snapshot

Deleterious mutation accumulation in organelle genomes

inferredcites →https://doi.org/10.1023/a:1025472709537openalex-snapshot

Abundance of plastid DNA insertions in nuclear genomes of rice and Arabidopsis

inferredcites →https://doi.org/10.1038/22099openalex-snapshot

Single gene circles in dinoflagellate chloroplast genomes

inferredcites →https://doi.org/10.1038/352258a0openalex-snapshot

Anticodon and acceptor stem nucleotides in tRNAGln are major recognition elements for E. coli glutaminyl-tRNA synthetase

inferredcites →https://doi.org/10.1038/nature01435openalex-snapshot

Direct measurement of the transfer rate of chloroplast DNA into the nucleus

inferredcites →https://doi.org/10.1038/nature01909openalex-snapshot

The plastid clpP1 protease gene is essential for plant development

inferredcites →https://doi.org/10.1038/nrmicro2670openalex-snapshot

Extreme genome reduction in symbiotic bacteria

inferredcites →https://doi.org/10.1046/j.1365-313x.1998.00195.xopenalex-snapshot

Stable albinism induced without mutagenesis: a model for ribosome‐free plastid inheritance

inferredcites →https://doi.org/10.1073/pnas.250402997openalex-snapshot

A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus

inferredcites →https://doi.org/10.1073/pnas.89.22.10648openalex-snapshot

Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant.

inferredcites →https://doi.org/10.1073/pnas.94.7.3465openalex-snapshot

Multi-functional acetyl-CoA carboxylase from Brassica napus is encoded by a multi-gene family: Indication for plastidic localization of at least one isoform

inferredcites →https://doi.org/10.1089/cmb.2013.0084openalex-snapshot

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

inferredcites →https://doi.org/10.1093/aob/mcn269openalex-snapshot

Ectomycorrhizal Inocybe species associate with the mycoheterotrophic orchid Epipogium aphyllum but not its asexual propagules

inferredcites →https://doi.org/10.1093/aob/mcr213openalex-snapshot

Diversity, phylogeny, and evolution in the monocotyledons

inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot

Automatic annotation of organellar genomes with DOGMA

inferredcites →https://doi.org/10.1093/bioinformatics/btm598openalex-snapshot

GenomeVx: simple web-based creation of editable circular chromosome maps

inferredcites →https://doi.org/10.1093/bioinformatics/btt702openalex-snapshot

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/emboj/17.4.868openalex-snapshot

Identification of a functional respiratory complex in chloroplasts through analysis of tobacco mutants containing disrupted plastid ndh genes

inferredcites →https://doi.org/10.1093/gbe/evr001openalex-snapshot

Correlation between Nuclear Plastid DNA Abundance and Plastid Number Supports the Limited Transfer Window Hypothesis

inferredcites →https://doi.org/10.1093/gbe/evr102openalex-snapshot

Sequencing and Analysis of Plastid Genome in Mycoheterotrophic Orchid Neottia nidus-avis

inferredcites →https://doi.org/10.1093/gbe/evu001openalex-snapshot

The Plastid Genome of Mycoheterotrophic Monocot Petrosavia stellaris Exhibits Both Gene Losses and Multiple Rearrangements

inferredcites →https://doi.org/10.1093/molbev/msj029openalex-snapshot

The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msm267openalex-snapshot

Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis

inferredcites →https://doi.org/10.1093/molbev/msr028openalex-snapshot

Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes

inferredcites →https://doi.org/10.1093/molbev/msu051openalex-snapshot

Possible Loss of the Chloroplast Genome in the Parasitic Flowering Plant Rafflesia lagascae (Rafflesiaceae)

inferredcites →https://doi.org/10.1093/molbev/msu252openalex-snapshot

Investigating the Path of Plastid Genome Degradation in an Early-Transitional Clade of Heterotrophic Orchids, and Implications for Heterotrophic Angiosperms

inferredcites →https://doi.org/10.1093/mp/ssu022openalex-snapshot

The Translational Apparatus of Plastids and Its Role in Plant Development

inferredcites →https://doi.org/10.1093/nar/21.21.4909openalex-snapshot

Editing corrects mispairing in the acceptor stem of bean and potato mitochondrial phenylalanine transfer RNAs

inferredcites →https://doi.org/10.1093/nar/25.5.0955openalex-snapshot

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

inferredcites →https://doi.org/10.1093/nar/gkh458openalex-snapshot

VISTA: computational tools for comparative genomics

inferredcites →https://doi.org/10.1093/nar/gkq291openalex-snapshot

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

inferredcites →https://doi.org/10.1093/pcp/pcg003openalex-snapshot

The Plastid clpP Gene May Not be Essential for Plant Cell Viability

inferredcites →https://doi.org/10.1098/rspb.2008.1758openalex-snapshot

The causes of mutation accumulation in mitochondrial genomes

inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

inferredcites →https://doi.org/10.1104/pp.106.088096openalex-snapshot

Arabidopsis Orthologs of Maize Chloroplast Splicing Factors Promote Splicing of Orthologous and Species-Specific Group II Introns

inferredcites →https://doi.org/10.1104/pp.110.168120openalex-snapshot

Identification of Nuclear Genes Encoding Chloroplast-Localized Proteins Required for Embryo Development in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.113.214528openalex-snapshot

Potential Functional Replacement of the Plastidic Acetyl-CoA Carboxylase Subunit (accD) Gene by Recent Transfers to the Nucleus in Some Angiosperm Lineages

inferredcites →https://doi.org/10.1104/pp.113.233718openalex-snapshot

A Plastid without a Genome: Evidence from the Nonphotosynthetic Green Algal Genus Polytomella

inferredcites →https://doi.org/10.1104/pp.120.2.343openalex-snapshot

Gravitropism in Higher Plants1

inferredcites →https://doi.org/10.1105/tpc.111.088906openalex-snapshot

Nonessential Plastid-Encoded Ribosomal Proteins in Tobacco: A Developmental Role for Plastid Translation and Implications for Reductive Genome Evolution

inferredcites →https://doi.org/10.1105/tpc.113.113373openalex-snapshot

Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family

inferredcites →https://doi.org/10.1111/j.1438-8677.2010.00369.xopenalex-snapshot

Stable isotope signatures confirm carbon and nitrogen gain through ectomycorrhizas in the ghost orchid Epipogium aphyllum Swartz*

inferredcites →https://doi.org/10.1111/tpj.12000openalex-snapshot

Versatile roles of Arabidopsis plastid ribosomal proteins in plant growth and development

inferredcites →https://doi.org/10.1139/g2012-057openalex-snapshot

Multiple and different genomic rearrangements of therbcL gene are present in the parasitic orchidNeottia nidus-avis

inferredcites →https://doi.org/10.1146/annurev.arplant.51.1.111openalex-snapshot

N ONPHOTOSYNTHETIC M ETABOLISM IN P LASTIDS

inferredcites →https://doi.org/10.1146/annurev.ge.19.120185.001545openalex-snapshot

COMPARATIVE ORGANIZATION OF CHLOROPLAST GENOMES

inferredcites →https://doi.org/10.1186/1471-2105-13-48openalex-snapshot

Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer

inferredcites →https://doi.org/10.1186/1471-2148-13-126openalex-snapshot

Parasitic plants have increased rates of molecular evolution across all three genomes

inferredcites →https://doi.org/10.1186/1471-2148-14-82openalex-snapshot

Selecting optimal partitioning schemes for phylogenomic datasets

inferredcites →https://doi.org/10.1186/1471-2229-10-68openalex-snapshot

Complete chloroplast genome of Oncidium Gower Ramsey and evaluation of molecular markers for identification and breeding in Oncidiinae

inferredcites →https://doi.org/10.1186/1741-7007-4-12openalex-snapshot

The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured

inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

inferredcites →https://doi.org/10.1261/rna.041681.113openalex-snapshot

tRNA anticodon shifts in eukaryotic genomes

inferredcites →https://doi.org/10.1371/journal.pone.0037128openalex-snapshot

Analysis of Complete Nucleotide Sequences of 12 Gossypium Chloroplast Genomes: Origin and Evolution of Allotetraploids

inferredcites →https://doi.org/10.14601/phytopathol_mediterr-14998u1.29openalex-snapshot

BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT

inferredcites →https://doi.org/10.2307/2419496openalex-snapshot

Multiple Independent Losses of Two Genes and One Intron from Legume Chloroplast Genomes

inferredcites →https://doi.org/10.3732/ajb.1200256openalex-snapshot

The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation

inferredcites →https://doi.org/10.4161/psb.5.4.10791openalex-snapshot

Saprotrophic fungal symbionts in tropical achlorophyllous orchids

inferredcites →https://doi.org/10.5860/choice.31-2679openalex-snapshot

Phylogeny and classification of the orchid family

inferredcites →https://doi.org/10.5860/choice.38-1564openalex-snapshot

Monocots: systematics and evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1002/ajb2.16084openalex-snapshot

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inferred← citeshttps://doi.org/10.1002/ajb2.16141openalex-snapshot

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inferred← citeshttps://doi.org/10.1002/ece3.74449openalex-snapshot

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inferred← citeshttps://doi.org/10.1007/978-3-031-57446-7_7openalex-snapshot

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inferred← citeshttps://doi.org/10.1007/978-3-031-70098-9_6openalex-snapshot

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inferred← citeshttps://doi.org/10.1007/s00606-017-1472-1openalex-snapshot

Sequencing of the plastome in the leafless green mycoheterotroph Cymbidium macrorhizon helps us to understand an early stage of fully mycoheterotrophic plastome structure

inferred← citeshttps://doi.org/10.1007/s00606-020-01690-8openalex-snapshot

Complete plastomes of 17 species of maples (Sapindaceae: Acer): comparative analyses and phylogenomic implications

inferred← citeshttps://doi.org/10.1007/s10265-021-01364-7openalex-snapshot

Weak population spatial genetic structure and low infraspecific specificity for fungal partners in the rare mycoheterotrophic orchid Epipogium aphyllum

inferred← citeshttps://doi.org/10.1007/s10722-025-02414-yopenalex-snapshot

Complete chloroplast genome sequence and phylogenetic analysis of Lactuca sativa var. ramosa hort

inferred← citeshttps://doi.org/10.1007/s11676-020-01288-3openalex-snapshot

Comparative analysis of the complete chloroplast genomes of six white oaks with high ecological amplitude in China

inferred← citeshttps://doi.org/10.1007/s12224-019-09356-1openalex-snapshot

Complete plastome sequences of two Neottia species and comparative analysis with other Neottieae species (Orchidaceae)

inferred← citeshttps://doi.org/10.1007/s40415-019-00524-3openalex-snapshot

Complete chloroplast genome of Anathallis obovata (Orchidaceae: Pleurothallidinae)

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Lost in the Light: Plastid Genome Evolution in Nonphotosynthetic Algae

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The limits and potential of paleogenomic techniques for reconstructing grapevine domestication

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Plastid phylogenomic data yield new and robust insights into the phylogeny of Cleisostoma–Gastrochilus clades (Orchidaceae, Aeridinae)

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Implications of plastome evolution in the true lilies (monocot order Liliales)

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Plastid phylogenomics improves resolution of phylogenetic relationship in the Cheirostylis and Goodyera clades of Goodyerinae (Orchidoideae, Orchidaceae)

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Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy

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Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives

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Retention of an apparently functional plastome in an apparently mycoheterotrophic orchid, Dipodium roseum D.L.Jones & M.A.Clem. (Orchidaceae)

inferred← citeshttps://doi.org/10.1071/bt22075_coopenalex-snapshot

Corrigendum to : Retention of an apparently functional plastome in an apparently mycoheterotrophic orchid, Dipodium roseum D.L.Jones & M.A.Clem. (Orchidaceae)

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Evolution of Geosiris (Iridaceae): historical biogeography and plastid-genome evolution in a genus of non-photosynthetic tropical rainforest herbs disjunct across the Indian Ocean

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Miniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genes

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Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants

inferred← citeshttps://doi.org/10.1080/19420889.2017.1283080openalex-snapshot

The plastid genomes of nonphotosynthetic algae are not so small after all

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Mycoheterotrophic Epirixanthes (Polygalaceae) has a typical angiosperm mitogenome but unorthodox plastid genomes

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Ancient Mitochondrial Gene Transfer between Fungi and the Orchids

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Genomic reconfiguration in parasitic plants involves considerable gene losses alongside global genome size inflation and gene births

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An Integrated Model of Phenotypic Trait Changes and Site-Specific Sequence Evolution

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The Plastid Genome of Polytoma uvella Is the Largest Known among Colorless Algae and Plants and Reflects Contrasting Evolutionary Paths to Nonphotosynthetic Lifestyles

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MoChlo: A Versatile, Modular Cloning Toolbox for Chloroplast Biotechnology

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Application of Next-generation Sequencing Method for Elucidating Evolutionary History of Chloroplast Genome in Plant Kingdom

inferred← citeshttps://doi.org/10.1111/jipb.70315openalex-snapshot

Orchid genome evolution and trait innovation

inferred← citeshttps://doi.org/10.1111/nph.13784openalex-snapshot

Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae

inferred← citeshttps://doi.org/10.1111/nph.14092openalex-snapshot

The elusive predisposition to mycoheterotrophy in Ericaceae

inferred← citeshttps://doi.org/10.1111/nph.14681openalex-snapshot

On the brink: the highly reduced plastomes of nonphotosynthetic Ericaceae

inferred← citeshttps://doi.org/10.1111/nph.15072openalex-snapshot

Dense infraspecific sampling reveals rapid and independent trajectories of plastome degradation in a heterotrophic orchid complex

inferred← citeshttps://doi.org/10.1111/nph.15134openalex-snapshot

Plastid genomes hit the big time

inferred← citeshttps://doi.org/10.1111/ppl.12950openalex-snapshot

PPR proteins – orchestrators of organelle RNA metabolism

inferred← citeshttps://doi.org/10.1111/tpj.14687openalex-snapshot

Plastid‐targeted forms of restriction endonucleases enhance the plastid genome rearrangement rate and trigger the reorganization of its genomic architecture

inferred← citeshttps://doi.org/10.1134/s1022795418090132openalex-snapshot

High-Throughput Sequencing for the Authentication of Food Products: Problems and Perspectives

inferred← citeshttps://doi.org/10.1186/s12864-018-4968-3openalex-snapshot

RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

inferred← citeshttps://doi.org/10.1186/s12864-023-09422-1openalex-snapshot

Extreme plastomes in holoparasitic Balanophoraceae are not the norm

inferred← citeshttps://doi.org/10.1186/s12864-023-09847-8openalex-snapshot

Comparative and phylogenetic analysis of Chiloschista (Orchidaceae) species and DNA barcoding investigation based on plastid genomes

inferred← citeshttps://doi.org/10.1186/s12870-016-0929-7openalex-snapshot

The loss of photosynthetic pathways in the plastid and nuclear genomes of the non-photosynthetic mycoheterotrophic eudicot Monotropa hypopitys

inferred← citeshttps://doi.org/10.1186/s12870-022-03836-xopenalex-snapshot

The extremely reduced, diverged and reconfigured plastomes of the largest mycoheterotrophic orchid lineage

inferred← citeshttps://doi.org/10.1186/s12870-023-04302-yopenalex-snapshot

Habitat-related plastome evolution in the mycoheterotrophic Neottia listeroides complex (Orchidaceae, Neottieae)

inferred← citeshttps://doi.org/10.1186/s12870-025-06850-xopenalex-snapshot

Plastome and transcriptome analysis reveals a degenerated photosynthesis-related pathway in the mycoheterotrophic vanilloid orchid Cyrtosia lindleyana

inferred← citeshttps://doi.org/10.1186/s12870-026-08437-6openalex-snapshot

Mitogenome characterization and organellar genome evolution in achlorophyllous orchid Chamaegastrodia shikokiana Makino & F.Maek. (Orchidaceae)

inferred← citeshttps://doi.org/10.1186/s12870-026-08728-yopenalex-snapshot

Comparative plastome analyses reveal life-form-associated selection signatures in Orchidaceae

inferred← citeshttps://doi.org/10.1186/s12915-016-0299-5openalex-snapshot

Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants

inferred← citeshttps://doi.org/10.1371/journal.pone.0142215openalex-snapshot

Seven New Complete Plastome Sequences Reveal Rampant Independent Loss of the ndh Gene Family across Orchids and Associated Instability of the Inverted Repeat/Small Single-Copy Region Boundaries

inferred← citeshttps://doi.org/10.1371/journal.pone.0143792openalex-snapshot

The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos

inferred← citeshttps://doi.org/10.1371/journal.pone.0150718openalex-snapshot

Complete Plastid Genome of the Recent Holoparasite Lathraea squamaria Reveals Earliest Stages of Plastome Reduction in Orobanchaceae

inferred← citeshttps://doi.org/10.1371/journal.pone.0162324openalex-snapshot

Chloroplast Genome Evolution in Actinidiaceae: clpP Loss, Heterogenous Divergence and Phylogenomic Practice

inferred← citeshttps://doi.org/10.1371/journal.pone.0187318openalex-snapshot

Independent degradation in genes of the plastid ndh gene family in species of the orchid genus Cymbidium (Orchidaceae; Epidendroideae)

inferred← citeshttps://doi.org/10.1371/journal.pone.0190321openalex-snapshot

Comparative genomic analysis of Genlisea (corkscrew plants—Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes

inferred← citeshttps://doi.org/10.1371/journal.pone.0227991openalex-snapshot

Characterization of sequence variability hotspots in Cranichideae plastomes (Orchidaceae, Orchidoideae)

inferred← citeshttps://doi.org/10.17660/actahortic.2024.1414.8openalex-snapshot

Phylogenomics of Orchidaceae: concatenated and coalescent analyses of the plastomes provide different insights into orchid phylogeny

inferred← citeshttps://doi.org/10.20944/preprints202312.2150.v1openalex-snapshot

Chloroplast Genome Comparison and Evolution Analysis of Dendrobium (Orchidaceae) among Multiple Photosynthetic Pathways

inferred← citeshttps://doi.org/10.3389/fpls.2020.00022openalex-snapshot

Plastome Evolution and Phylogeny of Orchidaceae, With 24 New Sequences

inferred← citeshttps://doi.org/10.3389/fpls.2020.00729openalex-snapshot

Insights Into Chloroplast Genome Evolution Across Opuntioideae (Cactaceae) Reveals Robust Yet Sometimes Conflicting Phylogenetic Topologies

inferred← citeshttps://doi.org/10.3389/fpls.2020.00799openalex-snapshot

Comparative Plastid Genomics of Neotropical Bulbophyllum (Orchidaceae; Epidendroideae)

inferred← citeshttps://doi.org/10.3389/fpls.2021.602598openalex-snapshot

Comparative Analysis of Plastid Genomes in the Non-photosynthetic Genus Thismia Reveals Ongoing Gene Set Reduction

inferred← citeshttps://doi.org/10.3389/fpls.2021.632033openalex-snapshot

The Genomic Impact of Mycoheterotrophy in Orchids

inferred← citeshttps://doi.org/10.3389/fpls.2024.1241515openalex-snapshot

Evolution of Whirly1 in the angiosperms: sequence, splicing, and expression in a clade of early transitional mycoheterotrophic orchids

inferred← citeshttps://doi.org/10.3389/fpls.2024.1388537openalex-snapshot

Plastid phylogenomics reveals evolutionary relationships in the mycoheterotrophic orchid genus Dipodium and provides insights into plastid gene degeneration

inferred← citeshttps://doi.org/10.3389/fpls.2024.1393225openalex-snapshot

Phylogenetic position and plastid genome structure of Vietorchis, a mycoheterotrophic genus of Orchidaceae (subtribe Orchidinae) endemic to Vietnam

inferred← citeshttps://doi.org/10.3389/fpls.2026.1923915openalex-snapshot

Selective regime shifts and intracellular gene transfer in the organellar genomes of the mycoheterotrophic orchid Galeola nudifolia Lour. (Orchidaceae)

inferred← citeshttps://doi.org/10.3390/cimb46090582openalex-snapshot

Analysis of Codon Usage Bias in the Plastid Genome of Diplandrorchis sinica (Orchidaceae)

inferred← citeshttps://doi.org/10.3390/d18100617openalex-snapshot

Plastome Reduction, Gene Loss, and Phylogenetic Position of the Fully Mycoheterotrophic Orchid Neottia kiusiana (Orchidaceae)

inferred← citeshttps://doi.org/10.3390/ijms24043808openalex-snapshot

Evolutionary Patterns of the Chloroplast Genome in Vanilloid Orchids (Vanilloideae, Orchidaceae)

inferred← citeshttps://doi.org/10.3390/ijms241411448openalex-snapshot

Ancient Horizontal Gene Transfers from Plastome to Mitogenome of a Nonphotosynthetic Orchid, Gastrodia pubilabiata (Epidendroideae, Orchidaceae)

inferred← citeshttps://doi.org/10.3390/ijms241512473openalex-snapshot

Comparative Phylogenetic Analysis for Aerides (Aeridinae, Orchidaceae) Based on Six Complete Plastid Genomes

inferred← citeshttps://doi.org/10.3390/ijms241914544openalex-snapshot

Characteristics and Comparative Analysis of Seven Complete Plastomes of Trichoglottis s.l. (Aeridinae, Orchidaceae)

inferred← citeshttps://doi.org/10.3390/ijms25010184openalex-snapshot

Characterization of Angraecum (Angraecinae, Orchidaceae) Plastomes and Utility of Sequence Variability Hotspots

inferred← citeshttps://doi.org/10.3390/ijms25031578openalex-snapshot

Organelle Genomes of Epipogium roseum Provide Insight into the Evolution of Mycoheterotrophic Orchids

inferred← citeshttps://doi.org/10.3390/ijms25158500openalex-snapshot

Plastome Evolution, Phylogenomics, and DNA Barcoding Investigation of Gastrochilus (Aeridinae, Orchidaceae), with a Focus on the Systematic Position of Haraella retrocalla

inferred← citeshttps://doi.org/10.3390/ijms252111603openalex-snapshot

Pan-Chloroplast Genomes Reveal the Accession-Specific Marker for Gastrodia elata f. glauca

inferred← citeshttps://doi.org/10.3390/land14030579openalex-snapshot

Naturalness and Tree Composition Determine the Abundance of Rare and Threatened Orchids in Mature and Old-Growth Abies alba Forests in the Northern Apennines (Italy)

inferred← citeshttps://doi.org/10.3390/molecules23071537openalex-snapshot

Whole-Genome Comparison Reveals Divergent IR Borders and Mutation Hotspots in Chloroplast Genomes of Herbaceous Bamboos (Bambusoideae: Olyreae)

inferred← citeshttps://doi.org/10.3390/plants9030306openalex-snapshot

The First Plastid Genome of the Holoparasitic Genus Prosopanche (Hydnoraceae)

inferred← citeshttps://doi.org/10.3390/plants9040521openalex-snapshot

Severe Plastid Genome Size Reduction in a Mycoheterotrophic Orchid, Danxiaorchis singchiana, Reveals Heavy Gene Loss and Gene Relocations

inferred← citeshttps://doi.org/10.3732/ajb.1500184openalex-snapshot

Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat

inferred← citeshttps://doi.org/10.3732/ajb.1500412openalex-snapshot

A few‐gene plastid phylogenetic framework for mycoheterotrophic monocots

inferred← citeshttps://doi.org/10.3732/ajb.1600042openalex-snapshot

Drastic reduction of plastome size in the mycoheterotrophic Thismia tentaculata relative to that of its autotrophic relative Tacca chantrieri

inferred← citeshttps://doi.org/10.3732/ajb.1700135openalex-snapshot

Plastome sequences of an ancient fern lineage reveal remarkable changes in gene content and architecture

inferred← citeshttps://doi.org/10.5735/085.055.0122openalex-snapshot

Complete Plastome Sequencing Reveals an Extremely Diminished SSC Region in HemiparasiticPedicularis ishidoyana(Orobanchaceae)

inferred← citeshttps://doi.org/10.6084/m9.figshare.23250662openalex-snapshot

Additional file 1 of Habitat-related plastome evolution in the mycoheterotrophic Neottia listeroides complex (Orchidaceae, Neottieae)

inferred← citeshttps://doi.org/10.6084/m9.figshare.24761421openalex-snapshot

Additional file 1 of Comparative and phylogenetic analysis of Chiloschista (Orchidaceae) species and DNA barcoding investigation based on plastid genomes

inferred← citeshttps://doi.org/10.6084/m9.figshare.24761971openalex-snapshot

Additional file 2 of Comparative and phylogenetic analysis of Chiloschista (Orchidaceae) species and DNA barcoding investigation based on plastid genomes

inferred← citeshttps://doi.org/10.6084/m9.figshare.26597453openalex-snapshot

Additional file 1 of Extreme plastomes in holoparasitic Balanophoraceae are not the norm

inferred← citeshttps://doi.org/10.6084/m9.figshare.26597456openalex-snapshot

Additional file 2 of Extreme plastomes in holoparasitic Balanophoraceae are not the norm

inferred← citeshttps://doi.org/10.6084/m9.figshare.26597459openalex-snapshot

Additional file 3 of Extreme plastomes in holoparasitic Balanophoraceae are not the norm

inferred← citeshttps://doi.org/10.6084/m9.figshare.26597462openalex-snapshot

Additional file 4 of Extreme plastomes in holoparasitic Balanophoraceae are not the norm

inferred← citeshttps://doi.org/10.70675/e80da54ez4400z4af2z90ccza6b6fb5b6bc7openalex-snapshot

Origins and early evolution of photosynthetic eukaryotes

inferred← citeshttps://doi.org/10.7287/peerj.10051v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.10051v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.10051v0.1/reviews/3openalex-snapshot

Peer Review #3 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.10051v0.2/reviews/2openalex-snapshot

Peer Review #2 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.2)"

inferred← citeshttps://doi.org/10.7287/peerj.10051v0.2/reviews/3openalex-snapshot

Peer Review #3 of "Plastome structure and adaptive evolution of Calanthe s.l. species (v0.2)"

inferred← citeshttps://doi.org/10.7287/peerj.12106v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.12106v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.12106v0.2/reviews/3openalex-snapshot

Peer Review #3 of "Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives (v0.2)"

inferred← citeshttps://doi.org/10.7287/peerj.7500v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.7500v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.7500v0.1/reviews/3openalex-snapshot

Peer Review #3 of "Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.7500v0.2/reviews/3openalex-snapshot

Peer Review #3 of "Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known (v0.2)"

inferred← citeshttps://doi.org/10.7287/peerj.7787v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Plastome of mycoheterotrophic Burmannia itoana Mak. (Burmanniaceae) exhibits extensive degradation and distinct rearrangements (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.7787v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Plastome of mycoheterotrophic Burmannia itoana Mak. (Burmanniaceae) exhibits extensive degradation and distinct rearrangements (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.7787v0.1/reviews/3openalex-snapshot

Peer Review #3 of "Plastome of mycoheterotrophic Burmannia itoana Mak. (Burmanniaceae) exhibits extensive degradation and distinct rearrangements (v0.1)"

inferred← citeshttps://doi.org/10.7717/peerj.10051openalex-snapshot

Plastome structure and adaptive evolution of Calanthe s.l. species

inferred← citeshttps://doi.org/10.7717/peerj.12106openalex-snapshot

Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives

inferred← citeshttps://doi.org/10.7717/peerj.7500openalex-snapshot

Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known

inferred← citeshttps://doi.org/10.7717/peerj.7787openalex-snapshot

Plastome of mycoheterotrophic Burmannia itoana Mak. (Burmanniaceae) exhibits extensive degradation and distinct rearrangements

inferred← citeshttps://doi.org/10.7717/peerj.9157openalex-snapshot

Plastome of the mycoheterotrophic eudicotExacum paucisquama(Gentianaceae) exhibits extensive gene loss and a highly expanded inverted repeat region

inferred← citeshttps://doi.org/10.7717/peerj.9315openalex-snapshot

Plastid genomes of the North American Rhus integrifolia-ovata complex and phylogenomic implications of inverted repeat structural evolution in Rhus L.

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.