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Using Herbarium‐Derived DNAs to Assemble a Large‐Scale DNA Barcode Library for the Vascular Plants of Canada

https://doi.org/10.3732/apps.1700079
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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DNA Barcoding Methods for Land Plants
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Rapid identification of the botanical and entomological sources of honey using DNA metabarcoding
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Radiation and diversification within the Ligularia–Cremanthodium–Parasenecio complex (Asteraceae) triggered by uplift of the Qinghai-Tibetan Plateau
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First insights into fern matK phylogeny
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Basic Local Alignment Search Tool
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Characterization of polyphenol oxidase from aerial roots of an orchid, Aranda `Christine 130'
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Don't judge species on their origins
inferredcites →https://doi.org/10.1038/523016aopenalex-snapshot
Plant collections left in the cold by cuts
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An analysis of Echinacea chloroplast genomes: Implications for future botanical identification
inferredcites →https://doi.org/10.1038/srep40057openalex-snapshot
ITS non-concerted evolution and rampant hybridization in the legume genus Lespedeza (Fabaceae)
inferredcites →https://doi.org/10.1073/pnas.0905845106openalex-snapshot
A DNA barcode for land plants
inferredcites →https://doi.org/10.1073/pnas.0909820106openalex-snapshot
Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama
inferredcites →https://doi.org/10.1073/pnas.1104551108openalex-snapshot
Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants
inferredcites →https://doi.org/10.1073/pnas.1503283112openalex-snapshot
DNA metabarcoding illuminates dietary niche partitioning by African large herbivores
inferredcites →https://doi.org/10.1080/0266476042000214501openalex-snapshot
Beta Regression for Modelling Rates and Proportions
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2012 Best Practices for Repositories Collection, Storage, Retrieval, and Distribution of Biological Materials for Research International Society for Biological and Environmental Repositories
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inferredcites →https://doi.org/10.1093/aobpla/plv045openalex-snapshot
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/sysbio/sys037openalex-snapshot
The Effect of Geographical Scale of Sampling on DNA Barcoding
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Biological identifications through DNA barcodes
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Unparalleled rates of species diversification in Europe
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inferredcites →https://doi.org/10.1111/1755-0998.12020openalex-snapshot
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inferredcites →https://doi.org/10.1111/1755-0998.12277openalex-snapshot
Challenges to barcoding an entire flora
inferredcites →https://doi.org/10.1111/1755-0998.12288openalex-snapshot
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inferredcites →https://doi.org/10.1111/bij.12642openalex-snapshot
Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline
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A revised evolutionary history of Poales: origins and diversification
inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
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Broad-scale amplification of matK for DNA barcoding plants, a technical note
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bold : The Barcode of Life Data System (http://www.barcodinglife.org)
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02547.xopenalex-snapshot
DNA barcoding discriminates the noxious invasive plant species, floating pennywort (Hydrocotyle ranunculoides L.f.), from non‐invasive relatives
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02725.xopenalex-snapshot
A regional approach to plant DNA barcoding provides high species resolution of sedges (Carex and Kobresia, Cyperaceae) in the Canadian Arctic Archipelago
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00092.xopenalex-snapshot
Discriminating plant species in a local temperate flora using the rbcL + matK DNA barcode
inferredcites →https://doi.org/10.1111/mec.13549openalex-snapshot
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inferredcites →https://doi.org/10.1111/nph.13657openalex-snapshot
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inferredcites →https://doi.org/10.1111/nph.14398openalex-snapshot
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inferredcites →https://doi.org/10.1111/nph.14461openalex-snapshot
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inferredcites →https://doi.org/10.1111/nph.14681openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.1171243openalex-snapshot
Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees
inferredcites →https://doi.org/10.1139/b09-093openalex-snapshot
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inferredcites →https://doi.org/10.1186/1471-2105-6-156openalex-snapshot
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
inferredcites →https://doi.org/10.1186/1471-2229-7-57openalex-snapshot
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
inferredcites →https://doi.org/10.1186/1472-6785-12-25openalex-snapshot
Identification of the vascular plants of Churchill, Manitoba, using a DNA barcode library
inferredcites →https://doi.org/10.12705/641.24openalex-snapshot
Species delimitation and relationships: The dance of the seven veils
inferredcites →https://doi.org/10.12705/code.2018openalex-snapshot
International Code of Nomenclature for algae, fungi, and plants
inferredcites →https://doi.org/10.1371/journal.pone.0008613openalex-snapshot
Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species
inferredcites →https://doi.org/10.1371/journal.pone.0028448openalex-snapshot
DNA Damage in Plant Herbarium Tissue
inferredcites →https://doi.org/10.1371/journal.pone.0037945openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0043971openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0054921openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0069189openalex-snapshot
Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens
inferredcites →https://doi.org/10.1371/journal.pone.0077982openalex-snapshot
DNA Barcoding the Canadian Arctic Flora: Core Plastid Barcodes (rbcL + matK) for 490 Vascular Plant Species
inferredcites →https://doi.org/10.1371/journal.pone.0106135openalex-snapshot
DNA Barcoding for Species Assignment: The Case of Mediterranean Marine Fishes
inferredcites →https://doi.org/10.1371/journal.pone.0107679openalex-snapshot
Phylogeny and Divergence Times of Gymnosperms Inferred from Single-Copy Nuclear Genes
inferredcites →https://doi.org/10.1371/journal.pone.0156426openalex-snapshot
Authentication of Herbal Supplements Using Next-Generation Sequencing
inferredcites →https://doi.org/10.1371/journal.pone.0169515openalex-snapshot
Testing the Efficacy of DNA Barcodes for Identifying the Vascular Plants of Canada
inferredcites →https://doi.org/10.15517/lank.v0i0.11762openalex-snapshot
Extraction and amplification of DNA from orchid exsiccates conserved for more than half a century in a herbarium in Bogotá, Colombia
inferredcites →https://doi.org/10.2307/1221885openalex-snapshot
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inferredcites →https://doi.org/10.2307/1223481openalex-snapshot
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inferredcites →https://doi.org/10.2307/2445819openalex-snapshot
The matK gene: sequence variation and application in plant systematics
inferredcites →https://doi.org/10.2307/25065646openalex-snapshot
A classification for extant ferns
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Draba bruce-bennettii(Brassicaceae), a Remarkable New Species from Yukon Territory, Canada
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fgene.2014.00358openalex-snapshot
Comparative evolutionary diversity and phylogenetic structure across multiple forest dynamics plots: a mega-phylogeny approach
inferredcites →https://doi.org/10.3390/d6020188openalex-snapshot
Diversity of Pyrrolizidine Alkaloids in the Boraginaceae Structures, Distribution, and Biological Properties
inferredcites →https://doi.org/10.3732/ajb.1200256openalex-snapshot
The plastid genome of the mycoheterotrophic Corallorhiza striata (Orchidaceae) is in the relatively early stages of degradation
inferredcites →https://doi.org/10.3732/ajb.1500412openalex-snapshot
A few‐gene plastid phylogenetic framework for mycoheterotrophic monocots
inferredcites →https://doi.org/10.3732/apps.1400066openalex-snapshot
Application of ITS2 metabarcoding to determine the provenance of pollen collected by honey bees in an agroecosystem
inferredcites →https://doi.org/10.3732/apps.1600110openalex-snapshot
An rbcL reference library to aid in the identification of plant species mixtures by DNA metabarcoding
inferredcites →https://doi.org/10.3897/phytokeys.25.3100openalex-snapshot
Database of Vascular Plants of Canada (VASCAN): a community contributed taxonomic checklist of all vascular plants of Canada, Saint Pierre and Miquelon, and Greenland

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.3159/torrey-d-24-00025.1openalex-snapshot
CSI botany: DNA barcode fingerprints verify identities of aquatic plants in Van Cortlandt Park, New York
inferred← citeshttps://doi.org/10.31857/s0006813624010053openalex-snapshot
Genomic DNA polymorphism in Myrica gale (Myricaceae) in the Lebyazhiy state Nature Reserve (the southern coast of the gulf of Finland)
inferred← citeshttps://doi.org/10.32734/jsi.v4i01.5563openalex-snapshot
DNA Barcoding of Rattan (Arecaceae) From Gunung Walat Education Forest, Sukabumi-West Java
inferred← citeshttps://doi.org/10.32942/x24891openalex-snapshot
A universal DNA barcode for the Tree of Life
inferred← citeshttps://doi.org/10.3372/wi.56.13openalex-snapshot
Caryophyllaceae revisited: phylogenetic insights and updated genus checklist
inferred← citeshttps://doi.org/10.3389/fevo.2018.00134openalex-snapshot
Advancing DNA Barcoding and Metabarcoding Applications for Plants Requires Systematic Analysis of Herbarium Collections—An Australian Perspective
inferred← citeshttps://doi.org/10.3389/fpls.2018.01877openalex-snapshot
Hundred Fifty Years of Herbarium Collections Provide a Reliable Resource of Volatile Terpenoid Profiles Showing Strong Species Effect in Four Medicinal Species of Salvia Across the Mediterranean
inferred← citeshttps://doi.org/10.3389/fpls.2018.01929openalex-snapshot
The Promise of Molecular and Genomic Techniques for Biodiversity Research and DNA Barcoding of the Arabian Peninsula Flora
inferred← citeshttps://doi.org/10.3389/fpls.2019.01102openalex-snapshot
Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms
inferred← citeshttps://doi.org/10.3389/fpls.2020.01319openalex-snapshot
Editorial: Integrative and Translational Uses of Herbarium Collections Across Time, Space, and Species
inferred← citeshttps://doi.org/10.3389/fpls.2021.669064openalex-snapshot
The Effects of Herbarium Specimen Characteristics on Short-Read NGS Sequencing Success in Nearly 8000 Specimens: Old, Degraded Samples Have Lower DNA Yields but Consistent Sequencing Success
inferred← citeshttps://doi.org/10.3389/fpls.2022.1042517openalex-snapshot
Evolutionary history and patterns of geographical variation, fertility, and hybridization in Stuckenia (Potamogetonaceae)
inferred← citeshttps://doi.org/10.3389/fpls.2025.1605431openalex-snapshot
How new plant species have been discovered in China: collection gaps and preferences over the past century
inferred← citeshttps://doi.org/10.3390/applbiosci5030071openalex-snapshot
Plastome Super-Barcoding Readiness of the Flora of Poland: Coverage, Provenance, and the Resolution Gap
inferred← citeshttps://doi.org/10.3390/d14040236openalex-snapshot
Using DNA Metabarcoding to Identify Floral Visitation by Pollinators
inferred← citeshttps://doi.org/10.3390/plants10102120openalex-snapshot
DNA-Based Herbal Teas’ Authentication: An ITS2 and psbA-trnH Multi-Marker DNA Metabarcoding Approach
inferred← citeshttps://doi.org/10.3390/plants9040432openalex-snapshot
The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material
inferred← citeshttps://doi.org/10.3897/bdj.9.e61333openalex-snapshot
DNA barcoding of native Caucasus herbal plants: potentials and limitations in complex groups and implications for phylogeographic patterns
inferred← citeshttps://doi.org/10.3897/phytokeys.132.37009openalex-snapshot
Swertia hongquanii, a new species of Gentianaceae from Mt. Wuling, southern China
inferred← citeshttps://doi.org/10.3897/phytokeys.188.75739openalex-snapshot
Phylogenetic relationships in Coryphantha and implications on Pelecyphora and Escobaria (Cacteae, Cactoideae, Cactaceae)
inferred← citeshttps://doi.org/10.4236/ajps.2018.913200openalex-snapshot
DNA Barcoding and Identification of Medicinal Plants in the Kingdom of Bahrain
inferred← citeshttps://doi.org/10.55730/1300-008x.2753openalex-snapshot
Improvements in the phylogeny of Epilobium and Chamaenerion inferred from nrDNA and cpDNA data focusing on Türkiye
inferred← citeshttps://doi.org/10.6084/m9.figshare.16944360openalex-snapshot
Additional file 1 of Variability in ITS1 and ITS2 sequences of historic herbaria and extant (fresh) Phalaris species (Poaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.16944363openalex-snapshot
Additional file 2 of Variability in ITS1 and ITS2 sequences of historic herbaria and extant (fresh) Phalaris species (Poaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.16944366openalex-snapshot
Additional file 3 of Variability in ITS1 and ITS2 sequences of historic herbaria and extant (fresh) Phalaris species (Poaceae)
inferred← citeshttps://doi.org/10.6084/m9.figshare.16944369openalex-snapshot
Additional file 4 of Variability in ITS1 and ITS2 sequences of historic herbaria and extant (fresh) Phalaris species (Poaceae)
inferred← citeshttps://doi.org/10.7287/peerj.13884v0.1/reviews/1openalex-snapshot
Peer Review #1 of "A phylogenetic analysis of Bromus (Poaceae: Pooideae: Bromeae) based on nuclear ribosomal and plastid data, with a focus on Bromus sect. Bromus (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.13884v0.1/reviews/2openalex-snapshot
Peer Review #2 of "A phylogenetic analysis of Bromus (Poaceae: Pooideae: Bromeae) based on nuclear ribosomal and plastid data, with a focus on Bromus sect. Bromus (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.13884v0.2/reviews/1openalex-snapshot
Peer Review #1 of "A phylogenetic analysis of Bromus (Poaceae: Pooideae: Bromeae) based on nuclear ribosomal and plastid data, with a focus on Bromus sect. Bromus (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.13884v0.2/reviews/2openalex-snapshot
Peer Review #2 of "A phylogenetic analysis of Bromus (Poaceae: Pooideae: Bromeae) based on nuclear ribosomal and plastid data, with a focus on Bromus sect. Bromus (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.13884openalex-snapshot
A phylogenetic analysis of Bromus (Poaceae: Pooideae: Bromeae) based on nuclear ribosomal and plastid data, with a focus on Bromus sect. Bromus
inferred← citeshttps://doi.org/10.7868/s0042132418060017openalex-snapshot
ДНК-ШТРИХКОДЫ РАСТЕНИЙ, "Успехи современной биологии"
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.