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The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities?

https://doi.org/10.3897/mbmg.5.68938

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding

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Metabarcoding unsorted kick‐samples facilitates macroinvertebrate‐based biomonitoring with increased taxonomic resolution, while outperforming environmental DNA

inferredcites →https://doi.org/10.1002/edn3.40openalex-snapshot

How can eDNA contribute in riverine macroinvertebrate assessment? A metabarcoding approach in the Nalón River (Asturias, Northern Spain)

inferredcites →https://doi.org/10.1007/s00442-008-1078-yopenalex-snapshot

Temporally stable abundance–occupancy relationships and occupancy frequency patterns in stream insects

inferredcites →https://doi.org/10.1007/s10750-011-0778-1openalex-snapshot

Geographical and seasonal evidence of cryptic diversity in the Baetis rhodani complex (Ephemeroptera, Baetidae) revealed by means of DNA taxonomy

inferredcites →https://doi.org/10.1016/bs.aecr.2018.01.001openalex-snapshot

Why We Need Sustainable Networks Bridging Countries, Disciplines, Cultures and Generations for Aquatic Biomonitoring 2.0: A Perspective Derived From the DNAqua-Net COST Action

inferredcites →https://doi.org/10.1016/j.ecolind.2015.08.024openalex-snapshot

Multiple-stressor effects on stream invertebrates: DNA barcoding reveals contrasting responses of cryptic mayfly species

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Assessing mining impacts: The influence of background geochemical conditions on diatom and macroinvertebrate communities in subarctic streams

inferredcites →https://doi.org/10.1016/j.scitotenv.2018.05.002openalex-snapshot

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

inferredcites →https://doi.org/10.1016/j.scitotenv.2019.04.247openalex-snapshot

DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

inferredcites →https://doi.org/10.1016/j.watres.2018.03.003openalex-snapshot

Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive

inferredcites →https://doi.org/10.1016/j.ympev.2007.09.009openalex-snapshot

MtDNA COI barcodes reveal cryptic diversity in the Baetis vernus group (Ephemeroptera, Baetidae)

inferredcites →https://doi.org/10.1023/a:1017523115381openalex-snapshot

Bioassessment of Streams using Macroinvertebrates: Are the Chironomidae Necessary?

inferredcites →https://doi.org/10.1038/nmeth.2604openalex-snapshot

UPARSE: highly accurate OTU sequences from microbial amplicon reads

inferredcites →https://doi.org/10.1038/s41467-020-17337-8openalex-snapshot

Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems

inferredcites →https://doi.org/10.1038/s41598-017-11421-8openalex-snapshot

Multiple mining impacts induce widespread changes in ecosystem dynamics in a boreal lake

inferredcites →https://doi.org/10.1086/674782openalex-snapshot

Does DNA barcoding improve performance of traditional stream bioassessment metrics?

inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot

Search and clustering orders of magnitude faster than BLAST

inferredcites →https://doi.org/10.1093/bioinformatics/btv401openalex-snapshot

Error filtering, pair assembly and error correction for next-generation sequencing reads

inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot

Biological identifications through DNA barcodes

inferredcites →https://doi.org/10.1101/057844openalex-snapshot

Diversity of Sericostomatidae (Trichoptera) Caddisflies in the Montseny Mountain Range

inferredcites →https://doi.org/10.1111/1365-2664.13404openalex-snapshot

Monitoring a Norwegian freshwater crayfish tragedy: eDNA snapshots of invasion, infection and extinction

inferredcites →https://doi.org/10.1111/1755-0998.12355openalex-snapshot

Universal and blocking primer mismatches limit the use of high‐throughput DNA sequencing for the quantitative metabarcoding of arthropods

inferredcites →https://doi.org/10.1111/1755-0998.13008openalex-snapshot

Metabarcoding a diverse arthropod mock community

inferredcites →https://doi.org/10.1111/2041-210x.12789openalex-snapshot

Assessing strengths and weaknesses of DNA metabarcoding‐based macroinvertebrate identification for routine stream monitoring

inferredcites →https://doi.org/10.1111/fwb.12450openalex-snapshot

Evolution and island endemism of morphologically cryptic Baetis and Cloeon species (Ephemeroptera, Baetidae) on the Canary Islands and Madeira

inferredcites →https://doi.org/10.1111/fwb.13443openalex-snapshot

Towards routine DNA metabarcoding of macroinvertebrates using bulk samples for freshwater bioassessment: Effects of debris and storage conditions on the recovery of target taxa

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05519.xopenalex-snapshot

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next‐generation DNA sequencing

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Measuring the impact of sewage effluent on the macroinvertebrate community of an upland stream: The effect of different levels of taxonomic resolution and quantification

inferredcites →https://doi.org/10.1111/j.1442-9993.2001.01070.pp.xopenalex-snapshot

A new method for non‐parametric multivariate analysis of variance

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bold : The Barcode of Life Data System (http://www.barcodinglife.org)

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Distance‐Based Tests for Homogeneity of Multivariate Dispersions

inferredcites →https://doi.org/10.1111/j.2041-210x.2012.00198.xopenalex-snapshot

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

inferredcites →https://doi.org/10.1111/mec.15472openalex-snapshot

Ecosystems monitoring powered by environmental genomics: A review of current strategies with an implementation roadmap

inferredcites →https://doi.org/10.1371/journal.pone.0130324openalex-snapshot

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

inferredcites →https://doi.org/10.1371/journal.pone.0220953openalex-snapshot

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems

inferredcites →https://doi.org/10.1371/journal.pone.0226527openalex-snapshot

Increased performance of DNA metabarcoding of macroinvertebrates by taxonomic sorting

inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot

Cutadapt removes adapter sequences from high-throughput sequencing reads

inferredcites →https://doi.org/10.1899/09-183.1openalex-snapshot

First audit of macroinvertebrate samples from an EU Water Framework Directive monitoring program: human error greatly lowers precision of assessment results

inferredcites →https://doi.org/10.1899/10-016.1openalex-snapshot

Can DNA barcodes of stream macroinvertebrates improve descriptions of community structure and water quality?

inferredcites →https://doi.org/10.2307/1468323openalex-snapshot

Taxonomy and stream ecology—The benefits of genus- and species-level identifications

inferredcites →https://doi.org/10.3354/meps092205openalex-snapshot

A method of linking multivariate community structure to environmental variables

inferredcites →https://doi.org/10.3389/fenvs.2017.00011openalex-snapshot

Validation and Development of COI Metabarcoding Primers for Freshwater Macroinvertebrate Bioassessment

inferredcites →https://doi.org/10.3389/fevo.2019.00434openalex-snapshot

Studying Ecosystems With DNA Metabarcoding: Lessons From Biomonitoring of Aquatic Macroinvertebrates

inferredcites →https://doi.org/10.3897/asp.75.e31919openalex-snapshot

High cryptic diversity in aquatic insects: an integrative approach to study the enigmatic Leuctra inermis species group (Plecoptera)

inferredcites →https://doi.org/10.3897/zookeys.872.34278openalex-snapshot

When barcoding fails: development of diagnostic nuclear markers for the sibling caddisfly species Sericostoma personatum (Spence in Kirby & Spence, 1826) and Sericostoma flavicorne Schneider, 1845

inferredcites →https://doi.org/10.7287/peerj.preprints.3456v5openalex-snapshot

Scaling up DNA metabarcoding for freshwater macrozoobenthos monitoring

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← backgroundhttps://doi.org/10.3897/mbmg.5.68938.suppl1zenodo-depositor-declared

Supplementary material 1 from: Turunen J, Mykrä H, Elbrecht V, Steinke D, Braukmann T, Aroviita J (2021) The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities? Metabarcoding and Metagenomics 5: e68938.…

inferred← backgroundhttps://doi.org/10.3897/mbmg.5.68938.suppl2zenodo-depositor-declared

Supplementary material 2 from: Turunen J, Mykrä H, Elbrecht V, Steinke D, Braukmann T, Aroviita J (2021) The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities? Metabarcoding and Metagenomics 5: e68938.…

inferred← backgroundhttps://doi.org/10.3897/mbmg.5.68938.suppl3zenodo-depositor-declared

Supplementary material 3 from: Turunen J, Mykrä H, Elbrecht V, Steinke D, Braukmann T, Aroviita J (2021) The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities? Metabarcoding and Metagenomics 5: e68938.…

inferred← backgroundhttps://doi.org/10.3897/mbmg.5.68938.suppl4zenodo-depositor-declared

Supplementary material 4 from: Turunen J, Mykrä H, Elbrecht V, Steinke D, Braukmann T, Aroviita J (2021) The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities? Metabarcoding and Metagenomics 5: e68938.…

inferred← backgroundhttps://doi.org/10.3897/mbmg.5.68938.suppl5zenodo-depositor-declared

Supplementary material 5 from: Turunen J, Mykrä H, Elbrecht V, Steinke D, Braukmann T, Aroviita J (2021) The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities? Metabarcoding and Metagenomics 5: e68938.…

inferred← backgroundhttps://doi.org/10.3897/mbmg.5.68938.suppl6zenodo-depositor-declared

Supplementary material 6 from: Turunen J, Mykrä H, Elbrecht V, Steinke D, Braukmann T, Aroviita J (2021) The power of metabarcoding: Can we improve bioassessment and biodiversity surveys of stream macroinvertebrate communities? Metabarcoding and Metagenomics 5: e68938.…

inferred← citeshttps://doi.org/10.1002/edn3.376openalex-snapshot

12S gene metabarcoding with DNA standard quantifies marine bony fish environmental DNA , identifies threshold for reproducible detection, and overcomes distortion due to amplification of non‐fish DNA

inferred← citeshttps://doi.org/10.1002/edn3.596openalex-snapshot

eDNA Is a Useful Environmental Monitoring Tool for Assessing Stream Ecological Health

inferred← citeshttps://doi.org/10.1002/edn3.70004openalex-snapshot

Assessing the Potential of Environmental DNA for Monitoring Nature‐Like Bypasses: Erroneous Surveillance Owing to DNA Flow‐Through

inferred← citeshttps://doi.org/10.1002/edn3.70143openalex-snapshot

Drivers of Insect Diversity and Community Turnover in Protected Tropical Deciduous Forests of Mexico

inferred← citeshttps://doi.org/10.1007/s00027-024-01134-2openalex-snapshot

Influence of water source on alpine stream community structure: linking morphological and metabarcoding approaches

inferred← citeshttps://doi.org/10.1007/s11252-026-01901-zopenalex-snapshot

Establishing biotic baselines in urban catchments using eDNA

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.171413openalex-snapshot

From DNA to diagnostics: A case study using macroinvertebrate metabarcoding to assess the effectiveness of restoration measures in a Dutch stream

inferred← citeshttps://doi.org/10.1101/2022.07.29.502053openalex-snapshot

12S Gene Metabarcoding with DNA Standard Quantifies Marine Bony Fish Environmental DNA, Identifies Threshold for Reproducible Amplification, and Overcomes Distortion Due to Non-Fish Vertebrate DNA

inferred← citeshttps://doi.org/10.1101/2022.10.06.511093openalex-snapshot

Introducing an rbc L and trn L reference library to aid in the metabarcoding analysis of foraged plants from semi-arid eastern South African savannas

inferred← citeshttps://doi.org/10.1111/1755-0998.13771openalex-snapshot

A needle in a haystack: A new metabarcoding approach to survey diversity at the species level of Arcellinida (Amoebozoa: Tubulinea)

inferred← citeshttps://doi.org/10.1111/mec.70379openalex-snapshot

Metabarcoding Chironomid Pupal Exuviae Enables Scalable Biomonitoring With High Comparability to Morphotaxonomy

inferred← citeshttps://doi.org/10.1371/journal.pone.0286144openalex-snapshot

Introducing an rbcL and a trnL reference library to aid in the metabarcoding analysis of foraged plants from two semi-arid eastern South African savanna bioregions

inferred← citeshttps://doi.org/10.3389/fmars.2023.1118120openalex-snapshot

European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation

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Wild Bee Nutritional Ecology: Integrative Strategies to Assess Foraging Preferences and Nutritional Requirements

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