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Electronic Sorting of Immune Cell Subpopulations Based on Highly Plastic Genes

https://doi.org/10.4049/jimmunol.1502552

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/eji.200939684openalex-snapshot

Membrane protein GARP is a receptor for latent TGF‐β on the surface of activated human Treg

inferredcites →https://doi.org/10.1002/eji.201041095openalex-snapshot

Subsets of human CD4 + regulatory T cells express the peripheral homing receptor CXCR3

inferredcites →https://doi.org/10.1002/eji.201243005openalex-snapshot

Beta2‐adrenergic receptor signaling in CD 4 + F oxp3 + regulatory T cells enhances their suppressive function in a PKA ‐dependent manner

inferredcites →https://doi.org/10.1002/eji.201344392openalex-snapshot

Enhanced suppressor function of TIM‐3 + FoxP3 + regulatory T cells

inferredcites →https://doi.org/10.1016/j.clim.2011.08.011openalex-snapshot

Molecular and functional heterogeneity of T regulatory cells

inferredcites →https://doi.org/10.1016/j.coi.2009.03.010openalex-snapshot

How are TH1 and TH2 effector cells made?

inferredcites →https://doi.org/10.1016/j.coi.2010.10.007openalex-snapshot

Regulation of T follicular helper cell formation and function by antigen presenting cells

inferredcites →https://doi.org/10.1016/j.coi.2011.07.018openalex-snapshot

Regulation of interleukin-10 and interleukin-22 expression in T helper cells

inferredcites →https://doi.org/10.1016/j.coi.2012.01.014openalex-snapshot

Helper T cell diversity and plasticity

inferredcites →https://doi.org/10.1016/j.immuni.2009.04.010openalex-snapshot

Mechanisms of Foxp3+ T Regulatory Cell-Mediated Suppression

inferredcites →https://doi.org/10.1016/j.immuni.2011.09.007openalex-snapshot

Dendritic Cell and Macrophage Heterogeneity In Vivo

inferredcites →https://doi.org/10.1016/j.it.2012.05.004openalex-snapshot

Defining the human T helper 17 cell phenotype

inferredcites →https://doi.org/10.1016/j.jaci.2012.05.003openalex-snapshot

TH17 and TH22 cells: A confusion of antimicrobial response with tissue inflammation versus protection

inferredcites →https://doi.org/10.1016/j.jaci.2013.07.029openalex-snapshot

IL-13/IL-22–coproducing T cells, a novel subset, are increased in atopic dermatitis

inferredcites →https://doi.org/10.1016/s1074-7613(02)00317-5openalex-snapshot

Growth Factor Independent-1 Induced by IL-4 Regulates Th2 Cell Proliferation

inferredcites →https://doi.org/10.1038/ni.1760openalex-snapshot

Foxp3+ regulatory T cells: differentiation, specification, subphenotypes

inferredcites →https://doi.org/10.1038/ni.1899openalex-snapshot

Effector T cell plasticity: flexibility in the face of changing circumstances

inferredcites →https://doi.org/10.1038/ni.1993openalex-snapshot

Fate mapping of IL-17-producing T cells in inflammatory responses

inferredcites →https://doi.org/10.1038/ni.2109openalex-snapshot

Phenotypic and functional plasticity of cells of innate immunity: macrophages, mast cells and neutrophils

inferredcites →https://doi.org/10.1038/ni.2467openalex-snapshot

Re(de)fining the dendritic cell lineage

inferredcites →https://doi.org/10.1038/ni1497openalex-snapshot

Development, cytokine profile and function of human interleukin 17–producing helper T cells

inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

inferredcites →https://doi.org/10.1038/nri3405openalex-snapshot

Molecular mechanisms of T cell co-stimulation and co-inhibition

inferredcites →https://doi.org/10.1038/nri3855openalex-snapshot

Transcriptional regulation of innate lymphoid cell fate

inferredcites →https://doi.org/10.1038/nri3857openalex-snapshot

Antibody-independent functions of B cells: a focus on cytokines

inferredcites →https://doi.org/10.1038/srep00464openalex-snapshot

Gene Set Enrichment Analysis Identifies LIF as a Negative Regulator of Human Th2 Cell Differentiation

inferredcites →https://doi.org/10.1038/srep10370openalex-snapshot

ImmuSort, a database on gene plasticity and electronic sorting for immune cells

inferredcites →https://doi.org/10.1038/srep12781openalex-snapshot

Human IL-21+IFN-γ+CD4+ T cells in nasal polyps are regulated by IL-12

inferredcites →https://doi.org/10.1073/pnas.0608981103openalex-snapshot

Gfi-1 plays an important role in IL-2-mediated Th2 cell expansion

inferredcites →https://doi.org/10.1073/pnas.0901944106openalex-snapshot

GARP (LRRC32) is essential for the surface expression of latent TGF-β on platelets and activated FOXP3 + regulatory T cells

inferredcites →https://doi.org/10.1073/pnas.0901965106openalex-snapshot

Expression of GARP selectively identifies activated human FOXP3+ regulatory T cells

inferredcites →https://doi.org/10.1073/pnas.0907939106openalex-snapshot

Bioinformatics construction of the human cell surfaceome

inferredcites →https://doi.org/10.1074/jbc.m115.655340openalex-snapshot

Lysosomal-associated Transmembrane Protein 4B (LAPTM4B) Decreases Transforming Growth Factor β1 (TGF-β1) Production in Human Regulatory T Cells

inferredcites →https://doi.org/10.1084/jem.20020620openalex-snapshot

Interleukin 21 Is a T Helper (Th) Cell 2 Cytokine that Specifically Inhibits the Differentiation of Naive Th Cells into Interferon γ–producing Th1 Cells

inferredcites →https://doi.org/10.1084/jem.20090246openalex-snapshot

IL-9 as a mediator of Th17-driven inflammatory disease

inferredcites →https://doi.org/10.1084/jem.20101167openalex-snapshot

SOCS2 regulates T helper type 2 differentiation and the generation of type 2 allergic responses

inferredcites →https://doi.org/10.1093/nar/gkn923openalex-snapshot

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

inferredcites →https://doi.org/10.1093/nar/gks1050openalex-snapshot

Gene Ontology Annotations and Resources

inferredcites →https://doi.org/10.1093/nar/gks1193openalex-snapshot

NCBI GEO: archive for functional genomics data sets—update

inferredcites →https://doi.org/10.1093/nar/gks1245openalex-snapshot

H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery

inferredcites →https://doi.org/10.1093/nar/gkt1076openalex-snapshot

Data, information, knowledge and principle: back to metabolism in KEGG

inferredcites →https://doi.org/10.1093/nar/gku980openalex-snapshot

ImmuCo: a database of gene co-expression in immune cells

inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

inferredcites →https://doi.org/10.1111/imr.12163openalex-snapshot

The importance of regulatory T‐cell heterogeneity in maintaining self‐tolerance

inferredcites →https://doi.org/10.1111/j.1365-2567.2007.02694.xopenalex-snapshot

Increased interleukin‐10 production and Th2 skewing in the absence of 5‐lipoxygenase

inferredcites →https://doi.org/10.1182/blood-2004-07-2505openalex-snapshot

CCR6 expression defines regulatory effector/memory-like cells within the CD25+CD4+ T-cell subset

inferredcites →https://doi.org/10.1182/blood-2010-02-258558openalex-snapshot

Nomenclature of monocytes and dendritic cells in blood

inferredcites →https://doi.org/10.1182/blood-2011-08-372003openalex-snapshot

Phenotypic and functional heterogeneity of human NK cells developing after umbilical cord blood transplantation: a role for human cytomegalovirus?

inferredcites →https://doi.org/10.1371/journal.pbio.1001833openalex-snapshot

CD4CD8αα Lymphocytes, A Novel Human Regulatory T Cell Subset Induced by Colonic Bacteria and Deficient in Patients with Inflammatory Bowel Disease

inferredcites →https://doi.org/10.1371/journal.pone.0002705openalex-snapshot

Identification of a Regulatory T Cell Specific Cell Surface Molecule that Mediates Suppressive Signals and Induces Foxp3 Expression

inferredcites →https://doi.org/10.1371/journal.pone.0022859openalex-snapshot

Identification of Human Housekeeping Genes and Tissue-Selective Genes by Microarray Meta-Analysis

inferredcites →https://doi.org/10.4049/jimmunol.0803302openalex-snapshot

IFN Regulatory Factor 4 Regulates the Expression of a Subset of Th2 Cytokines

inferredcites →https://doi.org/10.4049/jimmunol.0901906openalex-snapshot

Th1, Th17, and Th9 Effector Cells Induce Experimental Autoimmune Encephalomyelitis with Different Pathological Phenotypes

inferredcites →https://doi.org/10.4049/jimmunol.0903879openalex-snapshot

LAG-3 Expression Defines a Subset of CD4+CD25highFoxp3+ Regulatory T Cells That Are Expanded at Tumor Sites

inferredcites →https://doi.org/10.4049/jimmunol.168.8.3825openalex-snapshot

The Potency of TCR Signaling Differentially Regulates NFATc/p Activity and Early IL-4 Transcription in Naive CD4+ T Cells

inferredcites →https://doi.org/10.4049/jimmunol.175.1.32openalex-snapshot

Cutting Edge: In Contrast to Effector T Cells, CD4+CD25+FoxP3+ Regulatory T Cells Are Highly Susceptible to CD95 Ligand- but Not to TCR-Mediated Cell Death

inferredcites →https://doi.org/10.4049/jimmunol.176.8.4622openalex-snapshot

MHC Class II Expression Identifies Functionally Distinct Human Regulatory T Cells

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4687146openalex-extracted

Upregulated Circulating CD4 KLRD1 T Cells Exhibit Characteristics of CD4 Cytotoxic T Lymphocytes in Systemic Lupus Erythematosus Patients

inferred← citeshttps://doi.org/10.1002/advs.202514347openalex-snapshot

Mutual Exclusion Analysis Shows that DUSP9 Negatively Regulates PD‐L1 Expression and Acts as a Target to Enhance Anti‐PD‐1 Efficacy

inferred← citeshttps://doi.org/10.1002/eji.70213openalex-snapshot

Identifying Negative Biomarkers of CD4 Cytotoxic T Lymphocytes via Granzyme B Exclusion Analysis

inferred← citeshttps://doi.org/10.1007/s12026-025-09703-9openalex-snapshot

Systematic correlation analysis of human CD molecules reveals upregulated co-expression of CD58, CD63, and CD147 in patients with primary Sjögren’s syndrome

inferred← citeshttps://doi.org/10.1007/s13238-017-0421-7openalex-snapshot

LRRC25 plays a key role in all-trans retinoic acid-induced granulocytic differentiation as a novel potential leukocyte differentiation antigen

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High RASD1 transcript levels at diagnosis predicted poor survival in adult B-cell acute lymphoblastic leukemia patients

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Identification of rat Vstm1 with conservative anti-inflammatory effect between rat and human homologs

inferred← citeshttps://doi.org/10.1038/nrgastro.2017.110openalex-snapshot

The IBD interactome: an integrated view of aetiology, pathogenesis and therapy

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Tripterygium glycoside ameliorates neuroinflammation in a mouse model of Aβ25-35-induced Alzheimer’s disease by inhibiting the phosphorylation of IκBα and p38

inferred← citeshttps://doi.org/10.1093/database/baac020openalex-snapshot

ImmuMethy, a database of DNA methylation plasticity at a single cytosine resolution in human blood and immune cells

inferred← citeshttps://doi.org/10.1093/ibd/izx111openalex-snapshot

Network Medicine: A Mandatory Next Step for Inflammatory Bowel Disease

inferred← citeshttps://doi.org/10.1111/febs.70089openalex-snapshot

Analysis of mutually exclusive expression in cancer cells identifies a previously unknown intergenic regulatory paradigm

inferred← citeshttps://doi.org/10.18632/oncotarget.16416openalex-snapshot

Cysteine and glycine-rich protein 2 (CSRP2) transcript levels correlate with leukemia relapse and leukemia-free survival in adults with B-cell acute lymphoblastic leukemia and normal cytogenetics

inferred← citeshttps://doi.org/10.19122/978587181459201701openalex-snapshot

Doença inflamatória intestinal casos clínicos - abordagem multidisciplinar

inferred← citeshttps://doi.org/10.3389/fimmu.2023.1128423openalex-snapshot

A theoretical framework of immune cell phenotypic classification and discovery

inferred← citeshttps://doi.org/10.3389/fmed.2022.788992openalex-snapshot

The Interplay Between Use of Biological Therapies, Psychological State, and the Microbiome in IBD

inferred← citeshttps://doi.org/10.4049/jimmunol.1700946openalex-snapshot

Virtual Sorting Has a Distinctive Advantage in Identification of Anticorrelated Genes and Further Negative Regulators of Immune Cell Subpopulations

inferred← citeshttps://doi.org/10.4049/jimmunol.2101048openalex-snapshot

G Protein–Coupled Receptor 56 Characterizes CTLs and Reflects the Progression of Lung Cancer Patients

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