On the public citation graph

An atlas of the C. elegans starvation response reveals that transcription is necessary to initiate transcriptional silencing in quiescent primordial germ cells

https://doi.org/10.64898/2026.09.04.749554

0 signed · 110 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ana.22435openalex-snapshot

Restless legs syndrome‐associated MEIS1 risk variant influences iron homeostasis

inferredcites →https://doi.org/10.1002/j.1460-2075.1995.tb00310.xopenalex-snapshot

Schizosaccharomyces pombe atf1+ encodes a transcription factor required for sexual development and entry into stationary phase.

inferredcites →https://doi.org/10.1002/mrd.22223openalex-snapshot

The biology of the germ line in echinoderms

inferredcites →https://doi.org/10.1016/0012-1606(77)90158-0openalex-snapshot

Post-embryonic cell lineages of the nematode, Caenorhabditis elegans

inferredcites →https://doi.org/10.1016/j.cell.2015.02.041openalex-snapshot

Nutrient-Sensing Mechanisms across Evolution

inferredcites →https://doi.org/10.1016/j.cell.2016.05.025openalex-snapshot

Enhancer Control of Transcriptional Bursting

inferredcites →https://doi.org/10.1016/j.cell.2021.06.023openalex-snapshot

Molecular topography of an entire nervous system

inferredcites →https://doi.org/10.1016/j.celrep.2014.01.008openalex-snapshot

Pol II Docking and Pausing at Growth and Stress Genes in C. elegans

inferredcites →https://doi.org/10.1016/j.celrep.2014.12.029openalex-snapshot

A Long Noncoding RNA on the Ribosome Is Required for Lifespan Extension

inferredcites →https://doi.org/10.1016/j.celrep.2017.06.068openalex-snapshot

Genome-wide RNAi Screen for Fat Regulatory Genes in C. elegans Identifies a Proteostasis-AMPK Axis Critical for Starvation Survival

inferredcites →https://doi.org/10.1016/j.celrep.2019.02.102openalex-snapshot

The Transcription Factors TFEB and TFE3 Link the FLCN-AMPK Signaling Axis to Innate Immune Response and Pathogen Resistance

inferredcites →https://doi.org/10.1016/j.celrep.2021.109187openalex-snapshot

Immunity-longevity tradeoff neurally controlled by GABAergic transcription factor PITX1/UNC-30

inferredcites →https://doi.org/10.1016/j.celrep.2021.109835openalex-snapshot

DREAM represses distinct targets by cooperating with different THAP domain proteins

inferredcites →https://doi.org/10.1016/j.celrep.2022.111473openalex-snapshot

Alternative somatic and germline gene-regulatory strategies during starvation-induced developmental arrest

inferredcites →https://doi.org/10.1016/j.cels.2019.03.003openalex-snapshot

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

inferredcites →https://doi.org/10.1016/j.cmet.2012.09.007openalex-snapshot

Mitochondrial SKN-1/Nrf Mediates a Conserved Starvation Response

inferredcites →https://doi.org/10.1016/j.cmet.2016.05.024openalex-snapshot

Reversible Age-Related Phenotypes Induced during Larval Quiescence in C. elegans

inferredcites →https://doi.org/10.1016/j.cub.2006.02.073openalex-snapshot

C. elegans DAF-18/PTEN Mediates Nutrient-Dependent Arrest of Cell Cycle and Growth in the Germline

inferredcites →https://doi.org/10.1016/j.cub.2006.03.021openalex-snapshot

DAF-16/FOXO Regulates Transcription of cki-1/Cip/Kip and Repression of lin-4 during C. elegans L1 Arrest

inferredcites →https://doi.org/10.1016/j.cub.2013.04.046openalex-snapshot

The Tumor Suppressor Rb Critically Regulates Starvation-Induced Stress Response in C. elegans

inferredcites →https://doi.org/10.1016/j.cub.2013.11.008openalex-snapshot

A Mummified Duck-Billed Dinosaur with a Soft-Tissue Cock’s Comb

inferredcites →https://doi.org/10.1016/j.cub.2014.03.034openalex-snapshot

ROS Function in Redox Signaling and Oxidative Stress

inferredcites →https://doi.org/10.1016/j.devcel.2015.04.019openalex-snapshot

Zygotic Genome Activation Triggers Chromosome Damage and Checkpoint Signaling in C. elegans Primordial Germ Cells

inferredcites →https://doi.org/10.1016/j.devcel.2018.07.002openalex-snapshot

Programmed DNA Breaks Activate the Germline Genome in Caenorhabditis elegans

inferredcites →https://doi.org/10.1016/j.devcel.2020.03.014openalex-snapshot

HLH-30/TFEB Is a Master Regulator of Reproductive Quiescence

inferredcites →https://doi.org/10.1016/j.isci.2018.06.001openalex-snapshot

Live-Cell Imaging of Chromatin Condensation Dynamics by CRISPR

inferredcites →https://doi.org/10.1016/j.molcel.2018.11.020openalex-snapshot

Condensin-Dependent Chromatin Compaction Represses Transcription Globally during Quiescence

inferredcites →https://doi.org/10.1016/j.molcel.2021.06.009openalex-snapshot

Transcription-mediated supercoiling regulates genome folding and loop formation

inferredcites →https://doi.org/10.1016/j.redox.2020.101448openalex-snapshot

Redox-mediated regulation of aging and healthspan by an evolutionarily conserved transcription factor HLH-2/Tcf3/E2A

inferredcites →https://doi.org/10.1016/j.xpro.2020.100276openalex-snapshot

Liquid-culture protocols for synchronous starvation, growth, dauer formation, and dietary restriction of Caenorhabditis elegans

inferredcites →https://doi.org/10.1016/j.xpro.2022.101729openalex-snapshot

Protocol for fast scRNA-seq raw data processing using scKB and non-arbitrary quality control with COPILOT

inferredcites →https://doi.org/10.1016/j.ydbio.2014.08.002openalex-snapshot

Ins-4 and daf-28 function redundantly to regulate C. elegans L1 arrest

inferredcites →https://doi.org/10.1016/s1097-2765(00)80303-2openalex-snapshot

The C. elegans PTEN Homolog, DAF-18, Acts in the Insulin Receptor-like Metabolic Signaling Pathway

inferredcites →https://doi.org/10.1038/366461a0openalex-snapshot

A C. elegans mutant that lives twice as long as wild type

inferredcites →https://doi.org/10.1038/382713a0openalex-snapshot

Repression of gene expression in the embryonic germ lineage of C. elegans

inferredcites →https://doi.org/10.1038/nature05837openalex-snapshot

PHA-4/Foxa mediates diet-restriction-induced longevity of C. elegans

inferredcites →https://doi.org/10.1038/nature05904openalex-snapshot

Two neurons mediate diet-restriction-induced longevity in C. elegans

inferredcites →https://doi.org/10.1038/nbt.4096openalex-snapshot

Integrating single-cell transcriptomic data across different conditions, technologies, and species

inferredcites →https://doi.org/10.1038/nbt.4314openalex-snapshot

Dimensionality reduction for visualizing single-cell data using UMAP

inferredcites →https://doi.org/10.1038/ncb2718openalex-snapshot

TFEB controls cellular lipid metabolism through a starvation-induced autoregulatory loop

inferredcites →https://doi.org/10.1038/ncb2741openalex-snapshot

MXL-3 and HLH-30 transcriptionally link lipolysis and autophagy to nutrient availability

inferredcites →https://doi.org/10.1038/ncomms3267openalex-snapshot

The TFEB orthologue HLH-30 regulates autophagy and modulates longevity in Caenorhabditis elegans

inferredcites →https://doi.org/10.1038/nmeth.2089openalex-snapshot

NIH Image to ImageJ: 25 years of image analysis

inferredcites →https://doi.org/10.1038/nmeth.f.349openalex-snapshot

Stellaris™ fluorescence in situ hybridization (FISH) probes: a powerful tool for mRNA detection

inferredcites →https://doi.org/10.1038/nrm3591openalex-snapshot

Molecular regulation of stem cell quiescence

inferredcites →https://doi.org/10.1038/s41467-018-03531-2openalex-snapshot

PHA-4/FoxA senses nucleolar stress to regulate lipid accumulation in Caenorhabditis elegans

inferredcites →https://doi.org/10.1038/s41467-021-27732-4openalex-snapshot

Grainyhead 1 acts as a drug-inducible conserved transcriptional regulator linked to insulin signaling and lifespan

inferredcites →https://doi.org/10.1038/s41467-025-56766-1openalex-snapshot

Eukaryotic Elongation Factor 2 Kinase EFK-1/eEF2K promotes starvation resistance by preventing oxidative damage in C. elegans

inferredcites →https://doi.org/10.1038/s41556-024-01512-wopenalex-snapshot

Fasting shapes chromatin architecture through an mTOR/RNA Pol I axis

inferredcites →https://doi.org/10.1038/s41594-023-00942-8openalex-snapshot

The DREAM complex functions as conserved master regulator of somatic DNA-repair capacities

inferredcites →https://doi.org/10.1042/bst20221431openalex-snapshot

The molecular mechanisms of diapause and diapause-like reversible arrest

inferredcites →https://doi.org/10.1046/j.1365-2443.1996.d01-247.xopenalex-snapshot

Schizosaccharomyces pombe gad7 + encodes a phosphoprotein with a bZIP domain, which is required for proper G1 arrest and gene expression under nitrogen starvation

inferredcites →https://doi.org/10.1073/pnas.1002575107openalex-snapshot

Insulin/IGF-1 signaling mutants reprogram ER stress response regulators to promote longevity

inferredcites →https://doi.org/10.1073/pnas.1218778110openalex-snapshot

The mitochondrial unfolded protein response activator ATFS-1 protects cells from inhibition of the mevalonate pathway

inferredcites →https://doi.org/10.1073/pnas.1523402113openalex-snapshot

Reevaluation of whether a soma–to–germ-line transformation extends lifespan in Caenorhabditis elegans

inferredcites →https://doi.org/10.1080/21624054.2015.1118607openalex-snapshot

GATA transcription factors as tissue-specific master regulators for induced responses

inferredcites →https://doi.org/10.1083/jcb.202009197openalex-snapshot

A global chromatin compaction pathway that represses germline gene expression during starvation

inferredcites →https://doi.org/10.1093/g3journal/jkaf309openalex-snapshot

Transcriptome- and phenotype-based epistasis analysis in Caenorhabditis elegans reveals daf-16/FoxO -dependent and independent effects of daf-2/InsR in L1 starvation and recovery

inferredcites →https://doi.org/10.1093/genetics/163.1.171openalex-snapshot

Positive Selection of Caenorhabditis elegans Mutants With Increased Stress Resistance and Longevity

inferredcites →https://doi.org/10.1093/genetics/iyae049openalex-snapshot

Updates to the Alliance of Genome Resources central infrastructure

inferredcites →https://doi.org/10.1093/genetics/iyae050openalex-snapshot

WormBase 2024: status and transitioning to Alliance infrastructure

inferredcites →https://doi.org/10.1093/genetics/iyae189openalex-snapshot

Cel Est: a unified gene regulatory network for estimating transcription factor activities in C. elegans

inferredcites →https://doi.org/10.1093/nar/gkae909openalex-snapshot

KEGG: biological systems database as a model of the real world

inferredcites →https://doi.org/10.1093/nar/gkag949openalex-snapshot

HLH-30/TFEB is necessary for chromatin reorganization and maintenance of cell quiescence during starvation in C. elegans

inferredcites →https://doi.org/10.1093/nar/gku1360openalex-snapshot

A modular system of DNA enhancer elements mediates tissue-specific activation of transcription by high dietary zinc in C. elegans

inferredcites →https://doi.org/10.1101/2024.08.28.609383openalex-snapshot

Autophagy-dependent proteome remodelling and ribosome decline balance starvation survival and recovery speed in C. elegans

inferredcites →https://doi.org/10.1101/gr.133587.111openalex-snapshot

Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans

inferredcites →https://doi.org/10.1111/acel.12509openalex-snapshot

Alzheimer‐related protein APL ‐1 modulates lifespan through heterochronic gene regulation in Caenorhabditis elegans

inferredcites →https://doi.org/10.1111/acel.12743openalex-snapshot

NHR ‐49/ HNF 4 integrates regulation of fatty acid metabolism with a protective transcriptional response to oxidative stress and fasting

inferredcites →https://doi.org/10.1111/acel.12982openalex-snapshot

Diet restriction‐induced healthy aging is mediated through the immune signaling component ZIP‐2 in Caenorhabditis elegans

inferredcites →https://doi.org/10.1111/j.1474-9726.2009.00482.xopenalex-snapshot

p53/CEP‐1 increases or decreases lifespan, depending on level of mitochondrial bioenergetic stress

inferredcites →https://doi.org/10.1126/sciadv.adg0506openalex-snapshot

Whole-body gene expression atlas of an adult metazoan

inferredcites →https://doi.org/10.1126/science.1065486openalex-snapshot

Caenorhabditis elegans p53: Role in Apoptosis, Meiosis, and Stress Resistance

inferredcites →https://doi.org/10.1126/science.1169628openalex-snapshot

RNA Pol II Accumulates at Promoters of Growth Genes During Developmental Arrest

inferredcites →https://doi.org/10.1126/science.274.5285.209openalex-snapshot

An αβ T Cell Receptor Structure at 2.5 Å and Its Orientation in the TCR-MHC Complex

inferredcites →https://doi.org/10.1126/science.aam8940openalex-snapshot

Comprehensive single-cell transcriptional profiling of a multicellular organism

inferredcites →https://doi.org/10.1126/science.aax1971openalex-snapshot

A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution

inferredcites →https://doi.org/10.1128/ec.00446-07openalex-snapshot

Key Function for the CCAAT-Binding Factor Php4 To Regulate Gene Expression in Response to Iron Deficiency in Fission Yeast

inferredcites →https://doi.org/10.1128/ec.01.1.22-32.2002openalex-snapshot

Gcn4p, a Master Regulator of Gene Expression, Is Controlled at Multiple Levels by Diverse Signals of Starvation and Stress

inferredcites →https://doi.org/10.1128/mcb.20.2.429-440.2000openalex-snapshot

Helix-Loop-Helix Proteins: Regulators of Transcription in Eucaryotic Organisms

inferredcites →https://doi.org/10.1158/2159-8290.cd-15-0507openalex-snapshot

MYC, Metabolism, and Cancer

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1242/bio.2012836openalex-snapshot

C. elegans AMPKs promote survival and arrest germline development during nutrient stress

inferredcites →https://doi.org/10.1242/dev.005611openalex-snapshot

Cellular dynamics associated with the genome-wide epigenetic reprogramming in migrating primordial germ cells in mice

inferredcites →https://doi.org/10.1242/dev.02232openalex-snapshot

Inhibition of germline proliferation during C. elegans dauer development requires PTEN, LKB1 and AMPK signalling

inferredcites →https://doi.org/10.1242/dev.058131openalex-snapshot

Ci-Pem-1 localizes to the nucleus and represses somatic gene transcription in the germline of Ciona intestinalis embryos

inferredcites →https://doi.org/10.1242/dev.059501openalex-snapshot

synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survival

inferredcites →https://doi.org/10.1242/dev.166876openalex-snapshot

C. elegans PTEN and AMPK block neuroblast divisions by inhibiting a BMP-insulin-PP2A-MAPK pathway

inferredcites →https://doi.org/10.1261/rna.079073.121openalex-snapshot

FISH-quant v2: a scalable and modular tool for smFISH image analysis

inferredcites →https://doi.org/10.1371/journal.pbio.0030053openalex-snapshot

Nuclear Hormone Receptor NHR-49 Controls Fat Consumption and Fatty Acid Composition in C. elegans

inferredcites →https://doi.org/10.1371/journal.pgen.1000486openalex-snapshot

HIF-1 Modulates Dietary Restriction-Mediated Lifespan Extension via IRE-1 in Caenorhabditis elegans

inferredcites →https://doi.org/10.1371/journal.pgen.1000848openalex-snapshot

Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response

inferredcites →https://doi.org/10.1371/journal.pgen.1002542openalex-snapshot

Repression of Germline RNAi Pathways in Somatic Cells by Retinoblastoma Pathway Chromatin Complexes

inferredcites →https://doi.org/10.1371/journal.pgen.1003739openalex-snapshot

Conserved Translatome Remodeling in Nematode Species Executing a Shared Developmental Transition

inferredcites →https://doi.org/10.1371/journal.pgen.1005265openalex-snapshot

The Developmental Intestinal Regulator ELT-2 Controls p38-Dependent Immune Responses in Adult C. elegans

inferredcites →https://doi.org/10.1371/journal.pgen.1005731openalex-snapshot

dbl-1/TGF-β and daf-12/NHR Signaling Mediate Cell-Nonautonomous Effects of daf-16/FOXO on Starvation-Induced Developmental Arrest

inferredcites →https://doi.org/10.1371/journal.pgen.1006738openalex-snapshot

DAF-18/PTEN signals through AAK-1/AMPK to inhibit MPK-1/MAPK in feedback control of germline stem cell proliferation

inferredcites →https://doi.org/10.1371/journal.pgen.1009573openalex-snapshot

Phosphatidylcholine mediates the crosstalk between LET-607 and DAF-16 stress response pathways

inferredcites →https://doi.org/10.1371/journal.pgen.1009650openalex-snapshot

DAF-18/PTEN inhibits germline zygotic gene activation during primordial germ cell quiescence

inferredcites →https://doi.org/10.1371/journal.pone.0048282openalex-snapshot

Prediction of C. elegans Longevity Genes by Human and Worm Longevity Networks

inferredcites →https://doi.org/10.1534/genetics.113.150847openalex-snapshot

To Grow or Not to Grow: Nutritional Control of Development DuringCaenorhabditis elegansL1 Arrest

inferredcites →https://doi.org/10.1534/genetics.115.178699openalex-snapshot

Transgenerational Effects of Early Life Starvation on Growth, Reproduction, and Stress Resistance inCaenorhabditis elegans

inferredcites →https://doi.org/10.1534/genetics.118.301250openalex-snapshot

Transgenerational Effects of Extended Dauer Diapause on Starvation Survival and Gene Expression Plasticity in Caenorhabditis elegans

inferredcites →https://doi.org/10.1534/genetics.120.303565openalex-snapshot

Starvation Responses Throughout theCaenorhabditis elegansLife Cycle

inferredcites →https://doi.org/10.18632/aging.100604openalex-snapshot

TAF-4 is required for the life extension of isp-1, clk-1 and tpk-1 Mit mutants

inferredcites →https://doi.org/10.21769/bioprotoc.2357openalex-snapshot

Single-molecule RNA Fluorescence in situ Hybridization (smFISH) in Caenorhabditis elegans

inferredcites →https://doi.org/10.26508/lsa.202403147openalex-snapshot

DAF-18/PTEN protects LIN-35/Rb from CLP-1/CAPN-mediated cleavage to promote starvation resistance

inferredcites →https://doi.org/10.3389/fnmol.2023.1112253openalex-snapshot

A stay of execution: ATF4 regulation and potential outcomes for the integrated stress response

inferredcites →https://doi.org/10.7554/elife.30057openalex-snapshot

daf-16/FoxO promotes gluconeogenesis and trehalose synthesis during starvation to support survival

inferredcites →https://doi.org/10.7554/elife.44425openalex-snapshot

Endoplasmic reticulum-associated SKN-1A/Nrf1 mediates a cytoplasmic unfolded protein response and promotes longevity

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.