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Phylogenomic and mitogenomic data can accelerate inventorying of tropical beetles during the current biodiversity crisis

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Defensive chemistry of lycid beetles and of mimetic cerambycid beetles that feed on them

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The impact of taxonomic change on conservation: Does it kill, can it save, or is it just irrelevant?

inferredcites →https://doi.org/10.1016/j.biocon.2019.108401openalex-snapshot

A comprehensive assessment of diversity loss in a well-documented tropical insect fauna: Almost half of Singapore's butterfly species extirpated in 160 years

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Power of the people: A review of citizen science programs for conservation

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Evolutionary History of the Hymenoptera

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DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics

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Southeast Asian biodiversity: an impending disaster

inferredcites →https://doi.org/10.1016/j.tree.2019.12.003openalex-snapshot

A Plea for Standardized Nuclear Markers in Metazoan DNA Taxonomy

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BaCoCa – A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions

inferredcites →https://doi.org/10.1016/j.ympev.2015.05.028openalex-snapshot

Molecular phylogeny and biogeography of the weevil subfamily Platypodinae reveals evolutionarily conserved range patterns

inferredcites →https://doi.org/10.1016/j.ympev.2019.02.022openalex-snapshot

Phylogenomics of the superfamily Dytiscoidea (Coleoptera: Adephaga) with an evaluation of phylogenetic conflict and systematic error

inferredcites →https://doi.org/10.1016/s0169-5347(02)00041-1openalex-snapshot

A plea for DNA taxonomy

inferredcites →https://doi.org/10.1038/35002501openalex-snapshot

Biodiversity hotspots for conservation priorities

inferredcites →https://doi.org/10.1038/495314eopenalex-snapshot

Outdated taxonomy blocks conservation

inferredcites →https://doi.org/10.1038/nature06784openalex-snapshot

The genome of the model beetle and pest Tribolium castaneum

inferredcites →https://doi.org/10.1038/nature14949openalex-snapshot

Evolution of endemism on a young tropical mountain

inferredcites →https://doi.org/10.1038/ncomms1659openalex-snapshot

Loss of flight promotes beetle diversification

inferredcites →https://doi.org/10.1038/ncomms5001openalex-snapshot

The towering orogeny of New Guinea as a trigger for arthropod megadiversity

inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot

ModelFinder: fast model selection for accurate phylogenetic estimates

inferredcites →https://doi.org/10.1038/s41598-018-22155-6openalex-snapshot

Phylogeny and evolution of Müllerian mimicry in aposematic Dilophotes: evidence for advergence and size-constraints in evolution of mimetic sexual dimorphism

inferredcites →https://doi.org/10.1038/s41598-018-35328-0openalex-snapshot

Genome sequences identify three families of Coleoptera as morphologically derived click beetles (Elateridae)

inferredcites →https://doi.org/10.1038/s41598-020-68027-wopenalex-snapshot

Interactions in multi-pattern Müllerian communities support origins of new patterns, false structures, imperfect resemblance and mimetic sexual dimorphism

inferredcites →https://doi.org/10.1038/s41598-021-85567-xopenalex-snapshot

Conspicuousness, phylogenetic structure, and origins of Müllerian mimicry in 4000 lycid beetles from all zoogeographic regions

inferredcites →https://doi.org/10.1046/j.1523-1739.2002.00530.xopenalex-snapshot

Habitat Loss and Extinction in the Hotspots of Biodiversity

inferredcites →https://doi.org/10.1073/pnas.1909655116openalex-snapshot

The evolution and genomic basis of beetle diversity

inferredcites →https://doi.org/10.1073/pnas.94.13.6815openalex-snapshot

Likelihood-mapping: A simple method to visualize phylogenetic content of a sequence alignment

inferredcites →https://doi.org/10.1080/00222930210125362openalex-snapshot

Review of the immature stages of the family Lycidae (Insecta: Coleoptera)

inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

inferredcites →https://doi.org/10.1093/bioinformatics/btg1029openalex-snapshot

APDB: a novel measure for benchmarking sequence alignment methods without reference alignments

inferredcites →https://doi.org/10.1093/bioinformatics/btg1080openalex-snapshot

Gene prediction with a hidden Markov model and a new intron submodel

inferredcites →https://doi.org/10.1093/bioinformatics/btl064openalex-snapshot

Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btq243openalex-snapshot

The Newick utilities: high-throughput phylogenetic tree processing in the U nix shell

inferredcites →https://doi.org/10.1093/bioinformatics/btq706openalex-snapshot

phangorn: phylogenetic analysis in R

inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot

CD-HIT: accelerated for clustering the next-generation sequencing data

inferredcites →https://doi.org/10.1093/bioinformatics/btu077openalex-snapshot

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot

fastp: an ultra-fast all-in-one FASTQ preprocessor

inferredcites →https://doi.org/10.1093/gbe/evt157openalex-snapshot

Phylotranscriptomics: Saturated Third Codon Positions Radically Influence the Estimation of Trees Based on Next-Gen Data

inferredcites →https://doi.org/10.1093/gbe/evz193openalex-snapshot

The Prevalence and Impact of Model Violations in Phylogenetic Analysis

inferredcites →https://doi.org/10.1093/gigascience/giz006openalex-snapshot

Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale

inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

inferredcites →https://doi.org/10.1093/molbev/msn067openalex-snapshot

An Improved General Amino Acid Replacement Matrix

inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/molbev/msw079openalex-snapshot

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

inferredcites →https://doi.org/10.1093/molbev/msw260openalex-snapshot

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot

UFBoot2: Improving the Ultrafast Bootstrap Approximation

inferredcites →https://doi.org/10.1093/molbev/msx319openalex-snapshot

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

inferredcites →https://doi.org/10.1093/nar/gkl315openalex-snapshot

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

inferredcites →https://doi.org/10.1093/nar/gku983openalex-snapshot

The i5k Workspace@NAL—enabling genomic data access, visualization and curation of arthropod genomes

inferredcites →https://doi.org/10.1093/nar/gkw1119openalex-snapshot

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

inferredcites →https://doi.org/10.1093/nargab/lqaa024openalex-snapshot

A minimum reporting standard for multiple sequence alignments

inferredcites →https://doi.org/10.1093/sysbio/syaa014openalex-snapshot

Longer is Not Always Better: Optimizing Barcode Length for Large-Scale Species Discovery and Identification

inferredcites →https://doi.org/10.1093/sysbio/syab038openalex-snapshot

DNA Barcodes Combined with Multilocus Data of Representative Taxa Can Generate Reliable Higher-Level Phylogenies

inferredcites →https://doi.org/10.1093/sysbio/syp027openalex-snapshot

Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation

inferredcites →https://doi.org/10.1093/sysbio/syu069openalex-snapshot

Declining Rates of Species Described per Taxonomist: Slowdown of Progress or a Side-effect of Improved Quality in Taxonomy?

inferredcites →https://doi.org/10.1093/sysbio/syw037openalex-snapshot

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

inferredcites →https://doi.org/10.1093/sysbio/syw041openalex-snapshot

Exploring Phylogenetic Relationships within Myriapoda and the Effects of Matrix Composition and Occupancy on Phylogenomic Reconstruction

inferredcites →https://doi.org/10.1093/sysbio/syw099openalex-snapshot

Construction of a Species-Level Tree of Life for the Insects and Utility in Taxonomic Profiling

inferredcites →https://doi.org/10.1093/zoolinnean/zly090openalex-snapshot

The origins and dispersal history of the trichaline net-winged beetles in Southeast Asia, Wallacea, New Guinea and Australia

inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot

Biological identifications through DNA barcodes

inferredcites →https://doi.org/10.1098/rspb.2008.0171openalex-snapshot

Mimetic butterflies support Wallace's model of sexual dimorphism

inferredcites →https://doi.org/10.1098/rspb.2008.0476openalex-snapshot

Multiple ancient origins of neoteny in Lycidae (Coleoptera): consequences for ecology and macroevolution

inferredcites →https://doi.org/10.1098/rspb.2009.0015openalex-snapshot

New Guinea highland origin of a widespread arthropod supertramp

inferredcites →https://doi.org/10.1098/rspb.2015.2350openalex-snapshot

The discovery of Iberobaeniidae (Coleoptera: Elateroidea): a new family of beetles from Spain, with immatures detected by environmental DNA sequencing

inferredcites →https://doi.org/10.1098/rstb.2003.1457openalex-snapshot

Introduction

inferredcites →https://doi.org/10.1098/rstb.2005.1725openalex-snapshot

Defining operational taxonomic units using DNA barcode data

inferredcites →https://doi.org/10.1111/1755-0998.12539openalex-snapshot

Lessons from genome skimming of arthropod‐preserving ethanol

inferredcites →https://doi.org/10.1111/1755-0998.13167openalex-snapshot

Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland

inferredcites →https://doi.org/10.1111/2041-210x.12557openalex-snapshot

Metabarcoding and mitochondrial metagenomics of endogean arthropods to unveil the mesofauna of the soil

inferredcites →https://doi.org/10.1111/ecog.05128openalex-snapshot

Transgressing Wallace's Line brings hyperdiverse weevils down to earth

inferredcites →https://doi.org/10.1111/een.12313openalex-snapshot

Why grow up? A perspective on insect strategies to avoid metamorphosis

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05642.xopenalex-snapshot

Multi‐locus species delimitation in closely related animals and fungi: one marker is not enough

inferredcites →https://doi.org/10.1111/j.1466-8238.2009.00490.xopenalex-snapshot

Partitioning the turnover and nestedness components of beta diversity

inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00549.xopenalex-snapshot

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00812.xopenalex-snapshot

EVOLUTION OF MIMICRY PATTERNS INMETRIORRHYNCHUS(COLEOPTERA: LYCIDAE): THE HISTORY OF DISPERSAL AND SPECIATION IN SOUTHEAST ASIA

inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot

phytools: an R package for phylogenetic comparative biology (and other things)

inferredcites →https://doi.org/10.1111/mec.13195openalex-snapshot

Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics

inferredcites →https://doi.org/10.1111/mec.14461openalex-snapshot

Long‐term in situ persistence of biodiversity in tropical sky islands revealed by landscape genomics

inferredcites →https://doi.org/10.1111/mec.15909openalex-snapshot

Opportunities and challenges for high‐quality biodiversity tissue archives in the age of long‐read sequencing

inferredcites →https://doi.org/10.1111/syen.12363openalex-snapshot

Phylogenomic analysis resolves the relationships among net‐winged beetles (Coleoptera: Lycidae) and reveals the parallel evolution of morphological traits

inferredcites →https://doi.org/10.1111/syen.12506openalex-snapshot

Integrative phylogenomics reveals a Permian origin of Adephaga beetles

inferredcites →https://doi.org/10.1126/sciadv.1400253openalex-snapshot

Accelerated modern human–induced species losses: Entering the sixth mass extinction

inferredcites →https://doi.org/10.1126/science.1129237openalex-snapshot

Why Are There So Many Species of Herbivorous Insects in Tropical Rainforests?

inferredcites →https://doi.org/10.1126/science.1228282openalex-snapshot

An Update of Wallace’s Zoogeographic Regions of the World

inferredcites →https://doi.org/10.1126/science.1257570openalex-snapshot

Phylogenomics resolves the timing and pattern of insect evolution

inferredcites →https://doi.org/10.1126/science.aat9844openalex-snapshot

When the cure kills—CBD limits biodiversity research

inferredcites →https://doi.org/10.1126/science.aaw7071openalex-snapshot

Toward a world that values insects

inferredcites →https://doi.org/10.1126/science.aax9931openalex-snapshot

Meta-analysis reveals declines in terrestrial but increases in freshwater insect abundances

inferredcites →https://doi.org/10.1144/sp355.5openalex-snapshot

Australia–SE Asia collision: plate tectonics and crustal flow

inferredcites →https://doi.org/10.11646/zootaxa.3955.1.6openalex-snapshot

Molecular phylogeny of Metanoeina net-winged beetles identifies Ochinoeus, a new genus from China and Laos (Coleoptera: Lycidae)

inferredcites →https://doi.org/10.11646/zootaxa.4320.3.6openalex-snapshot

Species delimitation of colour polymorphic Cladophorus (Coleoptera: Lycidae) from New Guinea

inferredcites →https://doi.org/10.11646/zootaxa.4979.1.3openalex-snapshot

Contributions of Zootaxa to biodiversity discovery: an overview of the first twenty years

inferredcites →https://doi.org/10.1186/1471-2105-14-348openalex-snapshot

Selecting informative subsets of sparse supermatrices increases the chance to find correct trees

inferredcites →https://doi.org/10.1186/1471-2105-6-156openalex-snapshot

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences

inferredcites →https://doi.org/10.1186/1742-9994-10-15openalex-snapshot

Integrative taxonomy on the fast track - towards more sustainability in biodiversity research

inferredcites →https://doi.org/10.1186/1742-9994-7-10openalex-snapshot

Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees

inferredcites →https://doi.org/10.1186/gb-2013-14-3-r27openalex-snapshot

Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest

inferredcites →https://doi.org/10.1186/s12859-017-1529-8openalex-snapshot

Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes

inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

inferredcites →https://doi.org/10.1186/s12864-015-1911-8openalex-snapshot

Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool

inferredcites →https://doi.org/10.1186/s12915-019-0706-9openalex-snapshot

Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing

inferredcites →https://doi.org/10.1186/s12983-014-0081-xopenalex-snapshot

FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies

inferredcites →https://doi.org/10.1186/s12983-019-0335-8openalex-snapshot

Persistence of multiple patterns and intraspecific polymorphism in multi-species Müllerian communities of net-winged beetles

inferredcites →https://doi.org/10.1186/s13059-016-1088-8openalex-snapshot

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle–plant interface

inferredcites →https://doi.org/10.1371/journal.pbio.1001127openalex-snapshot

How Many Species Are There on Earth and in the Ocean?

inferredcites →https://doi.org/10.1371/journal.pbio.2002985openalex-snapshot

A population genetic interpretation of GWAS findings for human quantitative traits

inferredcites →https://doi.org/10.1371/journal.pbio.2005075openalex-snapshot

Taxonomy based on science is necessary for global conservation

inferredcites →https://doi.org/10.1371/journal.pone.0067957openalex-snapshot

Phylogeography of Poorly Dispersing Net-Winged Beetles: A Role of Drifting India in the Origin of Afrotropical and Oriental Fauna

inferredcites →https://doi.org/10.1371/journal.pone.0185809openalex-snapshot

More than 75 percent decline over 27 years in total flying insect biomass in protected areas

inferredcites →https://doi.org/10.14411/eje.2002.043openalex-snapshot

Generic revision and phylogenetic analysis of the Metriorrhynchinae (Coleoptera: Lycidae)

inferredcites →https://doi.org/10.3390/insects11100710openalex-snapshot

Biodiversity Inventory and Distribution of Metriorrhynchina Net-Winged Beetles (Coleoptera: Lycidae), with the Identification of Generic Ranges

inferredcites →https://doi.org/10.3390/insects12040369openalex-snapshot

From Phenology and Habitat Preferences to Climate Change: Importance of Citizen Science in Studying Insect Ecology in the Continental Scale with American Red Flat Bark Beetle, Cucujus clavipes, as a Model Species

inferredcites →https://doi.org/10.3390/insects9040154openalex-snapshot

Molecular Phylogeny, Diversity and Zoogeography of Net-Winged Beetles (Coleoptera: Lycidae)

inferredcites →https://doi.org/10.3897/asp.72.e31785openalex-snapshot

Subtribal classification of Metriorrhynchini (Insecta: Coleoptera: Lycidae): an integrative approach using molecular phylogeny and morphology of adults and larvae

inferredcites →https://doi.org/10.3897/zookeys.1013.55600openalex-snapshot

Minimalist revision and description of 403 new species in 11 subfamilies of Costa Rican braconid parasitoid wasps, including host records for 219 species

inferredcites →https://doi.org/10.7554/elife.71895openalex-snapshot

Phylogenomic and mitogenomic data can accelerate inventorying of tropical beetles during the current biodiversity crisis

inferredcites →https://doi.org/10.7717/peerj.3963openalex-snapshot

The comparison of molecular and morphology-based phylogenies of trichaline net-winged beetles (Coleoptera: Lycidae: Metriorrhynchini) with description of a new subgenus

inferredcites →https://doi.org/10.7717/peerj.6511openalex-snapshot

The Malacca Strait separates distinct faunas of poorly-flyingCautiresnet-winged beetles

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.5154.5.6zenodo-depositor-declared

New genus of erotine net-winged beetles, Damzenium gen. nov. (Coleoptera: Lycidae), from Eocene Rovno amber

inferred← citeshttps://doi.org/10.11646/zootaxa.5849.2.8zenodo-depositor-declared

New species of the porrostomine genus Isuarhynchus (Coleoptera: Lycidae) from the Solomon Islands, with a taxonomic note

inferred← citeshttps://doi.org/10.5852/ejt.2023.888.2239zenodo-depositor-declared

European net-winged beetles of the Pyropterus clade, with the description of Gomezzuritus gen. nov. (Coleoptera: Lycidae)

inferred← citeshttps://doi.org/10.5852/ejt.2025.1022.3089zenodo-depositor-declared

A phylogenetic analysis based on morphology reveals the placement of Lycomesus Zaragoza-Cabalero & González-Ramírez, 2019 and Lyconotus Green, 1949 within Lycini (Coleoptera: Lycidae), with the description of a new genus from North America

inferred← citeshttps://doi.org/10.1016/j.cretres.2022.105336openalex-snapshot

Two new species of Lasiosyne from the Lower Cretaceous Yixian Formation (Coleoptera, Lasiosynidae)

inferred← citeshttps://doi.org/10.1016/j.isci.2023.106217openalex-snapshot

Eocene aposematic patterns persist in modern European Lycidae beetles despite the absence of co-mimics

inferred← citeshttps://doi.org/10.1093/isd/ixac023openalex-snapshot

How Do Genomic, Mitochondrial, and Morphological Data Contribute to the Linnean Classification of the Porrostomine Net-Winged Beetles (Coleoptera, Lycidae)?

inferred← citeshttps://doi.org/10.1093/zoolinnean/zlad067openalex-snapshot

Neogene climatic fluctuations and poor connectivity with the centres of diversity shaped the Western Palaearctic net-winged beetle fauna

inferred← citeshttps://doi.org/10.1101/2022.09.08.507108openalex-snapshot

Neogene climatic fluctuations and poor connectivity with the centres of diversity shaped the Western Palearctic net-winged beetle fauna

inferred← citeshttps://doi.org/10.1111/syen.70020openalex-snapshot

Deep‐soil sampling in Chile reveals a new elateroid beetle family, Badmaateridae fam. nov. ( Coleoptera )

inferred← citeshttps://doi.org/10.3390/insects13090817openalex-snapshot

Analysis of the Holarctic Dictyoptera aurora Complex (Coleoptera, Lycidae) Reveals Hidden Diversity and Geographic Structure in Müllerian Mimicry Ring

inferred← citeshttps://doi.org/10.5772/intechopen.1011817openalex-snapshot

Integrating Morphological, Molecular and Whole Genome (Mitogenomic) Approaches in Indian Lepidoptera

inferred← citeshttps://doi.org/10.7717/peerj.17783openalex-snapshot

New taxonomic insights for BrazilianSyrbatusReitter (Coleoptera: Staphylinidae: Pselaphinae), including three new species and their mitochondrial genomes

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