On the public citation graph

The efficacy of single mitochondrial genes at reconciling the complete mitogenome phylogeny—a case study on dwarf chameleons

https://doi.org/10.7717/peerj.17076
0 signed · 81 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1873-3468.14021openalex-snapshot
Mitochondrial DNA copy number in human disease: the more the better?
inferredcites →https://doi.org/10.1007/pl00006190openalex-snapshot
Evolutionary Shifts in Three Major Structural Features of the Mitochondrial Genome Among Iguanian Lizards
inferredcites →https://doi.org/10.1016/0022-5193(67)90079-3openalex-snapshot
On the origin of mitosing cells
inferredcites →https://doi.org/10.1016/j.atg.2016.03.003openalex-snapshot
Limited resources of genome sequencing in developing countries: Challenges and solutions
inferredcites →https://doi.org/10.1016/j.gene.2006.09.026openalex-snapshot
Mitochondrial genomes from major lizard families suggest their phylogenetic relationships and ancient radiations
inferredcites →https://doi.org/10.1016/j.gene.2016.09.017openalex-snapshot
Assessment of snake DNA barcodes based on mitochondrial COI and Cytb genes revealed multiple putative cryptic species in Thailand
inferredcites →https://doi.org/10.1016/j.jksus.2022.102300openalex-snapshot
Molecular phylogenetic investigation of toads based on sequencing of the mitochondrial 16S ribosomal RNA gene
inferredcites →https://doi.org/10.1016/j.tig.2007.02.001openalex-snapshot
DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics
inferredcites →https://doi.org/10.1016/j.ympev.2004.05.003openalex-snapshot
Phylogenetic relationships among amphisbaenian reptiles based on complete mitochondrial genomic sequences
inferredcites →https://doi.org/10.1016/j.ympev.2008.08.024openalex-snapshot
Socotra Island the forgotten fragment of Gondwana: Unmasking chameleon lizard history with complete mitochondrial genomic data
inferredcites →https://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot
MITOS: Improved de novo metazoan mitochondrial genome annotation
inferredcites →https://doi.org/10.1016/j.ympev.2022.107578openalex-snapshot
Out of southern Africa: Origins and cryptic speciation in Chamaeleo, the most widespread chameleon genus
inferredcites →https://doi.org/10.1016/s1055-7903(03)00211-2openalex-snapshot
Phylogenetics of the southern African dwarf chameleons, Bradypodion (Squamata: Chamaeleonidae)
inferredcites →https://doi.org/10.1038/507294aopenalex-snapshot
Technology: The $1,000 genome
inferredcites →https://doi.org/10.1038/ncomms10272openalex-snapshot
Ancient origin and maternal inheritance of blue cuckoo eggs
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/s41598-021-92125-yopenalex-snapshot
Mitochondrial DNA duplication, recombination, and introgression during interspecific hybridization
inferredcites →https://doi.org/10.1038/s41598-022-08885-8openalex-snapshot
Pronounced mito-nuclear discordance and various Wolbachia infections in the water ringlet Erebia pronoe have resulted in a complex phylogeographic structure
inferredcites →https://doi.org/10.1046/j.1420-9101.1994.7020247.xopenalex-snapshot
Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record
inferredcites →https://doi.org/10.1073/pnas.2115635118openalex-snapshot
The Earth BioGenome Project 2020: Starting the clock
inferredcites →https://doi.org/10.1080/15627020.2018.1446358openalex-snapshot
Cryptic diversity in the common flap-necked chameleonChamaeleo dilepisin South Africa
inferredcites →https://doi.org/10.1080/21564574.2021.1998236openalex-snapshot
Convergence and vicariance: speciation of chameleons in the Cape Fold Mountains, South Africa, and the description of three new species of Bradypodion Fitzinger, 1843
inferredcites →https://doi.org/10.1091/mbc.e16-07-0509openalex-snapshot
Lynn Margulis and the endosymbiont hypothesis: 50 years later
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/biolinnean/blw037openalex-snapshot
Mito-nuclear discordance helps to reveal the phylogeographic patterns of Melitaea ornata (Lepidoptera: Nymphalidae)
inferredcites →https://doi.org/10.1093/jmammal/gyab156openalex-snapshot
Mitochondrial capture and subsequent genetic divergence generates a novel haplogroup: evidence from ancient and ongoing hybridization in mule and white-tailed deer
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
inferredcites →https://doi.org/10.1093/molbev/msaa106openalex-snapshot
New Methods to Calculate Concordance Factors for Phylogenomic Datasets
inferredcites →https://doi.org/10.1093/molbev/msaa139openalex-snapshot
ASTRAL-Pro: Quartet-Based Species-Tree Inference despite Paralogy
inferredcites →https://doi.org/10.1093/molbev/msw260openalex-snapshot
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/molbev/msw279openalex-snapshot
RWTY (R We There Yet): An R package for examining convergence of Bayesian phylogenetic analyses
inferredcites →https://doi.org/10.1093/molbev/msx051openalex-snapshot
Mitochondrial Mutation Rate, Spectrum and Heteroplasmy in Caenorhabditis elegans Spontaneous Mutation Accumulation Lines of Differing Population Size
inferredcites →https://doi.org/10.1093/nar/gkw955openalex-snapshot
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026201openalex-snapshot
Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040270openalex-snapshot
Phylogenetic relationships of amphibian families inferred from DNA sequences of mitochondrial 12S and 16S ribosomal RNA genes.
inferredcites →https://doi.org/10.1093/sysbio/49.2.257openalex-snapshot
Evolution and Phylogenetic Information Content of Mitochondrial Genomic Structural Features Illustrated with Acrodont Lizards
inferredcites →https://doi.org/10.1093/sysbio/syac078openalex-snapshot
Phylogenomics Reveals that Mitochondrial Capture and Nuclear Introgression Characterize Skua Species Proposed to be of Hybrid Origin
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/syw037openalex-snapshot
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
inferredcites →https://doi.org/10.1098/rsbl.2010.0119openalex-snapshot
A spectacular new Philippine monitor lizard reveals a hidden biogeographic boundary and a novel flagship species for conservation
inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot
Biological identifications through DNA barcodes
inferredcites →https://doi.org/10.1098/rspb.2013.0184openalex-snapshot
Large-scale phylogeny of chameleons suggests African origins and Eocene diversification
inferredcites →https://doi.org/10.1111/1755-0998.12173openalex-snapshot
Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead
inferredcites →https://doi.org/10.1111/j.1095-8312.2004.00370.xopenalex-snapshot
Natural colonization or introduction? Phylogeographical relationships and morphological differentiation of house geckos (Hemidactylus) from Madagascar
inferredcites →https://doi.org/10.1111/j.1365-2699.2008.01889.xopenalex-snapshot
Speciation and radiations track climate transitions since the Miocene Climatic Optimum: a case study of southern African chameleons
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05664.xopenalex-snapshot
The biogeography of mitochondrial and nuclear discordance in animals
inferredcites →https://doi.org/10.1111/j.1439-0469.2004.00225.xopenalex-snapshot
Phylogenetic signal and the utility of 12S and 16S mtDNA in frog phylogeny
inferredcites →https://doi.org/10.1111/jbi.12786openalex-snapshot
A world of sequences: can we use georeferenced nucleotide databases for a robust automated phylogeography?
inferredcites →https://doi.org/10.1111/mec.15211openalex-snapshot
One, two or more species? Mitonuclear discordance and species delimitation
inferredcites →https://doi.org/10.1111/zsc.12514openalex-snapshot
Stable climate corridors promote gene flow in the Cape sand snake species complex (Psammophiidae)
inferredcites →https://doi.org/10.1146/annurev.es.18.110187.002421openalex-snapshot
INTRASPECIFIC PHYLOGEOGRAPHY: The Mitochondrial DNA Bridge Between Population Genetics and Systematics
inferredcites →https://doi.org/10.11646/zootaxa.2226.1.4openalex-snapshot
A new species of dwarf chameleon (Sauria; Chamaeleonidae, Bradypodion Fitzinger) from KwaZulu Natal South Africa with notes on recent climatic shifts and their influence on speciation in the genus
inferredcites →https://doi.org/10.11646/zootaxa.3750.5.3openalex-snapshot
A molecular phylogeny of the African plated lizards, genus Gerrhosaurus Wiegmann, 1828 (Squamata: Gerrhosauridae), with the description of two new genera
inferredcites →https://doi.org/10.1186/1471-2148-10-141openalex-snapshot
Mitochondrial genomes of acrodont lizards: timing of gene rearrangements and phylogenetic and biogeographic implications
inferredcites →https://doi.org/10.1186/1742-9994-2-5openalex-snapshot
Comparative performance of the 16S rRNA gene in DNA barcoding of amphibians
inferredcites →https://doi.org/10.1186/s12862-022-01994-yopenalex-snapshot
Widely used, short 16S rRNA mitochondrial gene fragments yield poor and erratic results in phylogenetic estimation and species delimitation of amphibians
inferredcites →https://doi.org/10.1186/s13059-016-0917-0openalex-snapshot
The real cost of sequencing: scaling computation to keep pace with data generation
inferredcites →https://doi.org/10.1371/journal.pbio.3000193openalex-snapshot
Publication reform to safeguard wildlife from researcher harm
inferredcites →https://doi.org/10.1371/journal.pone.0027138openalex-snapshot
Mitogenome Phylogenetics: The Impact of Using Single Regions and Partitioning Schemes on Topology, Substitution Rate and Divergence Time Estimation
inferredcites →https://doi.org/10.1371/journal.pone.0034506openalex-snapshot
First Large-Scale DNA Barcoding Assessment of Reptiles in the Biodiversity Hotspot of Madagascar, Based on Newly Designed COI Primers
inferredcites →https://doi.org/10.1371/journal.pone.0084080openalex-snapshot
Performance of Single and Concatenated Sets of Mitochondrial Genes at Inferring Metazoan Relationships Relative to Full Mitogenome Data
inferredcites →https://doi.org/10.1371/journal.pone.0166292openalex-snapshot
Ancient Mitochondrial Capture as Factor Promoting Mitonuclear Discordance in Freshwater Fishes: A Case Study in the Genus Squalius (Actinopterygii, Cyprinidae) in Greece
inferredcites →https://doi.org/10.1670/10-301openalex-snapshot
Got It Clipped? The Effect of Tail Clipping on Tail Gripping Performance in Chameleons
inferredcites →https://doi.org/10.3389/fevo.2019.00342openalex-snapshot
The Mitochondrial Genome–on Selective Constraints and Signatures at the Organism, Cell, and Single Mitochondrion Levels
inferredcites →https://doi.org/10.3389/fgene.2021.774846openalex-snapshot
Use ggbreak to Effectively Utilize Plotting Space to Deal With Large Datasets and Outliers
inferredcites →https://doi.org/10.3390/biology10070572openalex-snapshot
Mitochondrial Protein Abundance Gradients Require the Distribution of Separated Mitochondria
inferredcites →https://doi.org/10.3390/genes13122228openalex-snapshot
Characterising Mitochondrial Capture in an Iberian Shrew

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.21425/fob.19.195124zenodo-depositor-declared
Diversity, origin, and biogeography of a widely distributed genus of African tree snakes (Colubridae, Dipsadoboa)
inferred← citeshttps://doi.org/10.1002/ece3.73270openalex-snapshot
Mining for Mitochondria: 68 Mitogenomes for Wrasses and Parrotfishes (F: Labridae) From Off‐Target UCE Data
inferred← citeshttps://doi.org/10.1007/s00335-026-10269-6openalex-snapshot
Tracing the genetic legacy of Malabari goats through complete mitogenome sequencing: evidence of maritime exchange via the historic spice route
inferred← citeshttps://doi.org/10.1007/s10592-024-01658-yopenalex-snapshot
Mitochondrial genomes reveal low genetic diversity in snow leopards
inferred← citeshttps://doi.org/10.1007/s12686-026-01409-wopenalex-snapshot
Genetic evidence for the presence of Chamaeleo africanus in Greece outside the Pylos region
inferred← citeshttps://doi.org/10.1080/24750263.2026.2635810openalex-snapshot
Spiny bears: a new species of Ramazzottius (Eutardigrada: Ramazzotidae) from Mexico unveils a hidden clade within the genus
inferred← citeshttps://doi.org/10.1093/cz/zoae076openalex-snapshot
Comparing perch availability and perch use between African dwarf chameleon ( Bradypodion ) ecomorphs
inferred← citeshttps://doi.org/10.1093/gbe/evaf209openalex-snapshot
Mitochondrial Gene Phylogenetic Incongruencies Are Linked to Chromosomal Position and Function
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlaf112openalex-snapshot
Ancient polymorphism, secondary contact, taxonomic inflation or all of them together? Mito-nuclear discordance in the Angolan girdled lizard (Cordylidae: Cordylus ), with the description of a new species from the central highlands
inferred← citeshttps://doi.org/10.1139/cjfas-2025-0370openalex-snapshot
Genetic research to guide conservation and the understanding of freshwater eels of the genus Anguilla : a bibliographic analysis
inferred← citeshttps://doi.org/10.1155/jzs/3068066openalex-snapshot
Drawing the Vine Line: Integrative Analyses Reveal Seven Distinct Species of African Vine Snakes, Thelotornis (Colubridae: Colubrinae)
inferred← citeshttps://doi.org/10.3389/fbinf.2025.1704212openalex-snapshot
Assessment of phylogenetic informativeness in mitochondrial and nuclear genes for mammalian systematics using sparse learning
inferred← citeshttps://doi.org/10.7717/peerj.21610openalex-snapshot
Guardians of the canopy: two new turtle ant species (Hymenoptera: Formicidae: Cephalotes ), from Ecuador’s Chocó and Amazonia, revealed by morphology and DNA barcoding
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.