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Phylogenetic Networks: A Review of Methods to Display Evolutionary History

https://doi.org/10.9734/arrb/2014/8230

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Minimum Recombination Histories by Branch and Bound

inferredcites →https://doi.org/10.1007/978-1-4614-7780-8openalex-snapshot

Lateral Gene Transfer in Evolution

inferredcites →https://doi.org/10.1007/978-3-319-16999-6_1279-1openalex-snapshot

Philosophie Zoologique

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An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers

inferredcites →https://doi.org/10.1007/978-3-642-56181-8_37openalex-snapshot

A Comparison of Alternative Methods for Detecting Reticulation Events in Phylogenetic Analysis

inferredcites →https://doi.org/10.1007/bf01732759openalex-snapshot

The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations

inferredcites →https://doi.org/10.1007/bf01734483openalex-snapshot

A measure of the denseness of a phylogenetic network

inferredcites →https://doi.org/10.1007/bf02101759openalex-snapshot

A view of early cellular evolution

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Polyploidy, hybridization and reticulate evolution: lessons from the Brassicaceae

inferredcites →https://doi.org/10.1007/s10539-010-9216-4openalex-snapshot

The series, the network, and the tree: changing metaphors of order in nature

inferredcites →https://doi.org/10.1007/s10577-011-9188-5openalex-snapshot

Comparing chromosomal and mitochondrial phylogenies of the Indriidae (Primates, Lemuriformes)

inferredcites →https://doi.org/10.1016/0006-3002(53)90289-3openalex-snapshot

The comparative biochemistry of the carotenoids

inferredcites →https://doi.org/10.1016/b978-0-12-800049-6.00221-3openalex-snapshot

Phylogenetic Networks

inferredcites →https://doi.org/10.1016/j.ajhg.2011.09.005openalex-snapshot

Denisova Admixture and the First Modern Human Dispersals into Southeast Asia and Oceania

inferredcites →https://doi.org/10.1016/j.gene.2010.05.002openalex-snapshot

A phylogenetic approach to detecting reassortments in viruses with segmented genomes

inferredcites →https://doi.org/10.1016/j.tig.2013.05.007openalex-snapshot

Networks: expanding evolutionary thinking

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Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model

inferredcites →https://doi.org/10.1016/j.ympev.2012.03.012openalex-snapshot

Sorting through the chaff, nDNA gene trees for phylogenetic inference and hybrid identification of annual sunflowers (Helianthus sect. Helianthus)

inferredcites →https://doi.org/10.1016/j.ympev.2012.05.009openalex-snapshot

Reticulate evolution on a global scale: A nuclear phylogeny for New World Dryopteris (Dryopteridaceae)

inferredcites →https://doi.org/10.1016/s0065-308x(06)63001-7openalex-snapshot

Phylogenetic Analyses of Parasites in the New Millennium

inferredcites →https://doi.org/10.1016/s1055-7903(02)00301-9openalex-snapshot

Additive polymorphisms and reticulation in an ITS phylogeny of thrifts (Armeria, Plumbaginaceae)

inferredcites →https://doi.org/10.1017/cbo9780511974076.006openalex-snapshot

Introduction to phylogenetic networks

inferredcites →https://doi.org/10.1038/nature01743openalex-snapshot

Widespread horizontal transfer of mitochondrial genes in flowering plants

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The ring of life provides evidence for a genome fusion origin of eukaryotes

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Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

inferredcites →https://doi.org/10.1038/nature08365openalex-snapshot

Reconstructing Indian population history

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Reconstructing Native American population history

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The evolution of epidemic influenza

inferredcites →https://doi.org/10.1038/nrg2071openalex-snapshot

The origin of eukaryotes: a reappraisal

inferredcites →https://doi.org/10.1038/nrg2386openalex-snapshot

Horizontal gene transfer in eukaryotic evolution

inferredcites →https://doi.org/10.1043/0363-6445-28.1.179openalex-snapshot

nrDNA external transcribed spacer (ETS) sequence data, reticulate evolution, and the systematics of Machaeranthera (Asteraceae)

inferredcites →https://doi.org/10.1055/s-2000-9106openalex-snapshot

Detecting Nucleotide Additivity from Direct Sequences is a SNAP: An Example from Sidalcea (Malvaceae)

inferredcites →https://doi.org/10.1073/pnas.0504068102openalex-snapshot

Highways of gene sharing in prokaryotes

inferredcites →https://doi.org/10.1073/pnas.1016295107openalex-snapshot

Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion

inferredcites →https://doi.org/10.1073/pnas.1205856110openalex-snapshot

Widespread horizontal transfer of retrotransposons

inferredcites →https://doi.org/10.1073/pnas.76.12.6694openalex-snapshot

Mitochondrial DNA clones and matriarchal phylogeny within and among geographic populations of the pocket gopher, Geomys pinetis.

inferredcites →https://doi.org/10.1080/03014220909510561openalex-snapshot

A review of genetic analyses of hybridisation in New Zealand

inferredcites →https://doi.org/10.1080/106351501753462911openalex-snapshot

Difficulties in Detecting Hybridization

inferredcites →https://doi.org/10.1080/106351598260798openalex-snapshot

Generalizing Phylogenetic Parsimony from the Tree to the Forest

inferredcites →https://doi.org/10.1080/10635159950127321openalex-snapshot

Testing Hybridization Hypotheses Based on Incongruent Gene Trees

inferredcites →https://doi.org/10.1086/280356openalex-snapshot

Internal Factors Affecting Discontinuity between Species

inferredcites →https://doi.org/10.1086/383584openalex-snapshot

Inferring Phylogenies.

inferredcites →https://doi.org/10.1086/600082openalex-snapshot

A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting

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Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions

inferredcites →https://doi.org/10.1093/acprof:oso/9780199229031.001.0001openalex-snapshot

Evolution through Genetic Exchange

inferredcites →https://doi.org/10.1093/aob/mcq092openalex-snapshot

Reticulate evolution in diploid and tetraploid species of Polystachya (Orchidaceae) as shown by plastid DNA sequences and low-copy nuclear genes

inferredcites →https://doi.org/10.1093/aob/mcs202openalex-snapshot

Apomixis and reticulate evolution in the Asplenium monanthes fern complex

inferredcites →https://doi.org/10.1093/bib/bbr045openalex-snapshot

Models, algorithms and programs for phylogeny reconciliation

inferredcites →https://doi.org/10.1093/bioinformatics/bti1033openalex-snapshot

Efficient computation of close lower and upper bounds on the minimum number of recombinations in biological sequence evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btp133openalex-snapshot

PADRE: a package for analyzing and displaying reticulate evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btq198openalex-snapshot

Close lower and upper bounds for the minimum reticulate network of multiple phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/btq467openalex-snapshot

RDP3: a flexible and fast computer program for analyzing recombination

inferredcites →https://doi.org/10.1093/bioinformatics/bts225openalex-snapshot

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss

inferredcites →https://doi.org/10.1093/bioinformatics/bts386openalex-snapshot

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees

inferredcites →https://doi.org/10.1093/bioinformatics/bts548openalex-snapshot

DLRS: gene tree evolution in light of a species tree

inferredcites →https://doi.org/10.1093/gbe/evs018openalex-snapshot

An Evolutionary Network of Genes Present in the Eukaryote Common Ancestor Polls Genomes on Eukaryotic and Mitochondrial Origin

inferredcites →https://doi.org/10.1093/genetics/92.1.279openalex-snapshot

THE USE OF RESTRICTION ENDONUCLEASES TO MEASURE MITOCHONDRIAL DNA SEQUENCE RELATEDNESS IN NATURAL POPULATIONS. I. POPULATION STRUCTURE AND EVOLUTION IN THE GENUS PEROMYSCUS

inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot

Application of Phylogenetic Networks in Evolutionary Studies

inferredcites →https://doi.org/10.1093/molbev/msl045openalex-snapshot

Reconstructing the Evolutionary History of Polyploids from Multilabeled Trees

inferredcites →https://doi.org/10.1093/nar/gkp089openalex-snapshot

Darwinian evolution in the light of genomics

inferredcites →https://doi.org/10.1093/nar/gkq1232openalex-snapshot

GiRaF: robust, computational identification of influenza reassortments via graph mining

inferredcites →https://doi.org/10.1093/oso/9780195099744.001.0001openalex-snapshot

Natural Hybridization and Evolution

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025647openalex-snapshot

Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids

inferredcites →https://doi.org/10.1093/sysbio/44.2.152openalex-snapshot

Continuous Track Analysis: A New Phylogenetic and Biogeographic Method

inferredcites →https://doi.org/10.1093/sysbio/syp055openalex-snapshot

Identifying Hybridization Events in the Presence of Coalescence via Model Selection

inferredcites →https://doi.org/10.1093/sysbio/syp068openalex-snapshot

Reticulation, Data Combination, and Inferring Evolutionary History: An Example from Danthonioideae (Poaceae)

inferredcites →https://doi.org/10.1093/sysbio/syp076openalex-snapshot

Unifying Vertical and Nonvertical Evolution: A Stochastic ARG-based Framework

inferredcites →https://doi.org/10.1093/sysbio/syq084openalex-snapshot

Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1093/sysbio/syr054openalex-snapshot

Phylogenetic Networks: Concepts, Algorithms and Applications

inferredcites →https://doi.org/10.1093/sysbio/syr096openalex-snapshot

Inferring Species Networks from Gene Trees in High-Polyploid North American and Hawaiian Violets (Viola, Violaceae)

inferredcites →https://doi.org/10.1093/sysbio/syt012openalex-snapshot

Statistical Inference of Allopolyploid Species Networks in the Presence of Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1093/sysbio/syt037openalex-snapshot

Parsimonious Inference of Hybridization in the Presence of Incomplete Lineage Sorting

inferredcites →https://doi.org/10.1098/rspb.2009.1679openalex-snapshot

Horizontal gene transfer in evolution: facts and challenges

inferredcites →https://doi.org/10.1098/rstb.2009.0032openalex-snapshot

The practice of classification and the theory of evolution, and what the demise of Charles Darwin's tree of life hypothesis means for both of them

inferredcites →https://doi.org/10.1105/tpc.109.065805openalex-snapshot

Phylogenomic Analysis Demonstrates a Pattern of Rare and Ancient Horizontal Gene Transfer between Plants and Fungi

inferredcites →https://doi.org/10.1109/tcbb.2008.73openalex-snapshot

Reassortment Networks for Investigating the Evolution of Segmented Viruses

inferredcites →https://doi.org/10.1109/tcbb.2010.14openalex-snapshot

Simultaneous Identification of Duplications and Lateral Gene Transfers

inferredcites →https://doi.org/10.1109/tcbb.2011.95openalex-snapshot

Reassortment Networks and the Evolution of Pandemic H1N1 Swine-Origin Influenza

inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03464.xopenalex-snapshot

Recombination, balancing selection and adaptive evolution in the aflatoxin gene cluster of Aspergillus parasiticus

inferredcites →https://doi.org/10.1111/j.1558-5646.1953.tb00058.xopenalex-snapshot

THE ROLE OF HYBRIDIZATION IN THE EVOLUTION OF THE LEAFY-STEMMED GILIAS

inferredcites →https://doi.org/10.1111/j.1558-5646.2010.00983.xopenalex-snapshot

UNRAVELING CRYPTIC RETICULATE RELATIONSHIPS AND THE ORIGIN OF ORPHAN HYBRID DISJUNCT POPULATIONS INNARCISSUS

inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03065.xopenalex-snapshot

JML: testing hybridization from species trees

inferredcites →https://doi.org/10.1111/j.2164-0947.1949.tb00296.xopenalex-snapshot

SECTION OF ANTHROPOLOGY: THE TREE OF CULTURE

inferredcites →https://doi.org/10.1126/science.1094884openalex-snapshot

Ancient Invasions: From Endosymbionts to Organelles

inferredcites →https://doi.org/10.1139/gen-2012-0195openalex-snapshot

What does the 5S rRNA multigene family tell us about the origin of the annual Triticeae (Poaceae)?

inferredcites →https://doi.org/10.1142/9789814447362_0055openalex-snapshot

A TREE OBSCURED BY VINES: HORIZONTAL GENE TRANSFER AND THE MEDIAN TREE METHOD OF ESTIMATING SPECIES PHYLOGENY

inferredcites →https://doi.org/10.1145/974614.974656openalex-snapshot

Reconciliation problems for duplication, loss and horizontal gene transfer

inferredcites →https://doi.org/10.1145/974614.974660openalex-snapshot

Simultaneous identification of duplications and lateral transfers

inferredcites →https://doi.org/10.1146/annurev.biochem.77.061306.125255openalex-snapshot

Mechanism of Eukaryotic Homologous Recombination

inferredcites →https://doi.org/10.1146/annurev.ecolsys.28.1.359openalex-snapshot

Hybrid Origins of Plant Species

inferredcites →https://doi.org/10.1186/1471-2105-8-460openalex-snapshot

Dendroscope: An interactive viewer for large phylogenetic trees

inferredcites →https://doi.org/10.1186/1471-2148-10-42openalex-snapshot

SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees

inferredcites →https://doi.org/10.1186/1471-2148-12-104openalex-snapshot

Unraveling reticulate evolution in North American Dryopteris (Dryopteridaceae)

inferredcites →https://doi.org/10.1186/1471-2148-13-1openalex-snapshot

New approaches for unravelling reassortment pathways

inferredcites →https://doi.org/10.1186/1471-2148-3-2openalex-snapshot

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

inferredcites →https://doi.org/10.1186/1471-2148-6-27openalex-snapshot

Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes

inferredcites →https://doi.org/10.1186/1471-2148-7-45openalex-snapshot

The power of phylogenetic approaches to detect horizontally transferred genes

inferredcites →https://doi.org/10.1186/1471-2148-7-7openalex-snapshot

Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika – the result of repeated introgressive hybridization

inferredcites →https://doi.org/10.1186/1471-2148-9-239openalex-snapshot

Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): disentangling phylogenetic signal, reticulation, and noise

inferredcites →https://doi.org/10.1186/1471-2229-12-133openalex-snapshot

Evidence of cryptic introgression in tomato (Solanum lycopersicum L.) based on wild tomato species alleles

inferredcites →https://doi.org/10.1186/1745-6150-4-43openalex-snapshot

Trees and networks before and after Darwin

inferredcites →https://doi.org/10.1186/1745-6150-6-32openalex-snapshot

How stands the Tree of Life a century and a half after The Origin?

inferredcites →https://doi.org/10.12697/sss.2003.31.2.15openalex-snapshot

Ladder, tree, web: The ages of biological understanding

inferredcites →https://doi.org/10.1371/journal.pbio.0030316openalex-snapshot

The Cobweb of Life Revealed by Genome-Scale Estimates of Horizontal Gene Transfer

inferredcites →https://doi.org/10.1371/journal.pbio.1001096openalex-snapshot

Darwin's Theory of Descent with Modification, versus the Biblical Tree of Life

inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

inferredcites →https://doi.org/10.1371/journal.pone.0025509openalex-snapshot

ReCombine: A Suite of Programs for Detection and Analysis of Meiotic Recombination in Whole-Genome Datasets

inferredcites →https://doi.org/10.1371/journal.pone.0039089openalex-snapshot

Coalescent Simulations Reveal Hybridization and Incomplete Lineage Sorting in Mediterranean Linaria

inferredcites →https://doi.org/10.1371/journal.pone.0046947openalex-snapshot

Genealogy-Based Methods for Inference of Historical Recombination and Gene Flow and Their Application in Saccharomyces cerevisiae

inferredcites →https://doi.org/10.1371/journal.pone.0073682openalex-snapshot

mtDNA from the Early Bronze Age to the Roman Period Suggests a Genetic Link between the Indian Subcontinent and Mesopotamian Cradle of Civilization

inferredcites →https://doi.org/10.1371/journal.pone.0075230openalex-snapshot

Detection of Homologous Recombination Events in Bacterial Genomes

inferredcites →https://doi.org/10.1525/aa.1994.96.4.02a00110openalex-snapshot

Putting Anthropology Back Together Again: The Ethnogenetic Critique of Cladistic Theory

inferredcites →https://doi.org/10.1534/genetics.105.054502openalex-snapshot

Estimating the Contribution of Mutation, Recombination and Gene Conversion in the Generation of Haplotypic Diversity

inferredcites →https://doi.org/10.1534/genetics.112.145037openalex-snapshot

Ancient Admixture in Human History

inferredcites →https://doi.org/10.1600/036364407780360238openalex-snapshot

Hybrids and Phylogenetics Revisited: A Statistical Test of Hybridization Using Quartets

inferredcites →https://doi.org/10.2134/agronj1955.00021962004700070021xopenalex-snapshot

The Genus Nicotiana Origins Relationships and Evolution of its Species in the Light of Their Distribution, Morphology and Cytogenetics

inferredcites →https://doi.org/10.2307/1221161openalex-snapshot

METAPHORS AND TYPOLOGY IN THE DEVELOPMENT OF BOTANICAL SYSTEMATICS 1690–1960, OR THE ART OF PUTTING NEW WINE IN OLD BOTTLES

inferredcites →https://doi.org/10.2307/1547129openalex-snapshot

New Species of North American Cystopteris and Polypodium, with Comments on Their Reticulate Relationships

inferredcites →https://doi.org/10.2307/2419662openalex-snapshot

When Genes Tell Different Stories: The Diploid Genera of Triticeae (Gramineae)

inferredcites →https://doi.org/10.2307/2446155openalex-snapshot

Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)

inferredcites →https://doi.org/10.2307/2482834openalex-snapshot

The Genus Clarkia.

inferredcites →https://doi.org/10.2307/2485224openalex-snapshot

On the Origin of Species by Means of Natural Selection

inferredcites →https://doi.org/10.2307/2804889openalex-snapshot

Cyto-Taxonomy and Phylogeny of the Oleaceae

inferredcites →https://doi.org/10.2307/3669016openalex-snapshot

The Genus Nicotiana. Origins, Relationships and Evolution of Its Species in the Light of Their Distribution, Morphology and Cytogenetics

inferredcites →https://doi.org/10.3366/anh.2011.0001openalex-snapshot

The tree as evolutionary icon: TREE in the Natural History Museum, London (William T. Stearn Prize 2010)

inferredcites →https://doi.org/10.3732/ajb.91.10.1700openalex-snapshot

Reconstructing patterns of reticulate evolution in plants

inferredcites →https://doi.org/10.5860/choice.35-0883openalex-snapshot

Natural hybridization and evolution

inferredcites →https://doi.org/10.5860/choice.50-0269openalex-snapshot

Trees of life: a visual history of evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.288.1.5zenodo-depositor-declared

Delimitation of a novel member of genus Metarhizium (Clavicipitaceae) by phylogenetic and network analysis

inferred← citeshttps://doi.org/10.1002/9781119078845.ch22openalex-snapshot

Pattern Recognition in Phylogenetics: Trees and Networks

inferred← citeshttps://doi.org/10.1002/aps3.11580openalex-snapshot

A roadmap of phylogenomic methods for studying polyploid plant genera

inferred← citeshttps://doi.org/10.1007/s00338-021-02072-3openalex-snapshot

Application of phylogenomic tools to unravel anthozoan evolution

inferred← citeshttps://doi.org/10.1007/s00606-019-01596-0openalex-snapshot

The Scandinavian Syntrichia ruralis complex (Musci, Pottiaceae): a chaos of diversification

inferred← citeshttps://doi.org/10.1007/s11692-016-9376-5openalex-snapshot

Genealogies: Pedigrees and Phylogenies are Reticulating Networks Not Just Divergent Trees

inferred← citeshttps://doi.org/10.1007/s12038-015-9514-8openalex-snapshot

Evolutionary change and phylogenetic relationships in light of horizontal gene transfer

inferred← citeshttps://doi.org/10.1016/b978-0-12-799942-5.00008-1openalex-snapshot

Phylogenetic Analysis of Pathogens

inferred← citeshttps://doi.org/10.1016/j.ppees.2026.125939openalex-snapshot

Small mountaintop genera of Asteraceae (Eupatorieae) with a complex evolutionary history

inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107483openalex-snapshot

A road map for phylogenetic models of species trees

inferred← citeshttps://doi.org/10.1017/9781139047678openalex-snapshot

Cladistics

inferred← citeshttps://doi.org/10.1017/9781139047678.001openalex-snapshot

Preface

inferred← citeshttps://doi.org/10.1017/9781139047678.002openalex-snapshot

Introduction: Carving Nature at Its Joints, or Why Birds Are Not Dinosaurs and Men Are Not Apes

inferred← citeshttps://doi.org/10.1017/9781139047678.003openalex-snapshot

The Interrelationships of Organisms

inferred← citeshttps://doi.org/10.1017/9781139047678.004openalex-snapshot

What This Book Is About

inferred← citeshttps://doi.org/10.1017/9781139047678.005openalex-snapshot

Classification

inferred← citeshttps://doi.org/10.1017/9781139047678.006openalex-snapshot

Systematics: Exposing Myths

inferred← citeshttps://doi.org/10.1017/9781139047678.007openalex-snapshot

Relationship Diagrams

inferred← citeshttps://doi.org/10.1017/9781139047678.008openalex-snapshot

Essentialism and Typology

inferred← citeshttps://doi.org/10.1017/9781139047678.009openalex-snapshot

Monothetic and Polythetic Taxa

inferred← citeshttps://doi.org/10.1017/9781139047678.010openalex-snapshot

Non-taxa or the Absence of –Phyly: Paraphyly and Aphyly

inferred← citeshttps://doi.org/10.1017/9781139047678.011openalex-snapshot

The Cladistic Programme

inferred← citeshttps://doi.org/10.1017/9781139047678.012openalex-snapshot

Parameters of Classification:Ordo Ab Chao

inferred← citeshttps://doi.org/10.1017/9781139047678.013openalex-snapshot

How to Study Classification

inferred← citeshttps://doi.org/10.1017/9781139047678.014openalex-snapshot

Modern Artificial Methods and Raw Data

inferred← citeshttps://doi.org/10.1017/9781139047678.015openalex-snapshot

How to Study Classification: Consensus Techniques and General Classifications

inferred← citeshttps://doi.org/10.1017/9781139047678.016openalex-snapshot

How to Study Classification: ‘Total Evidence’ vs. ‘Consensus’, Character Congruence vs. Taxonomic Congruence, Simultaneous Analysis vs. Partitioned Data

inferred← citeshttps://doi.org/10.1017/9781139047678.017openalex-snapshot

How to Study Classification

inferred← citeshttps://doi.org/10.1017/9781139047678.018openalex-snapshot

How to Study Classification

inferred← citeshttps://doi.org/10.1017/9781139047678.019openalex-snapshot

Beyond Classification

inferred← citeshttps://doi.org/10.1017/9781139047678.020openalex-snapshot

Beyond Classification: How to Study Phylogeny

inferred← citeshttps://doi.org/10.1017/9781139047678.021openalex-snapshot

The Separation of Classification and Phylogenetics

inferred← citeshttps://doi.org/10.1017/9781139047678.022openalex-snapshot

Further Myths and More Misunderstandings

inferred← citeshttps://doi.org/10.1017/9781139047678.023openalex-snapshot

Afterword

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Index

inferred← citeshttps://doi.org/10.1017/9781139047678.025openalex-snapshot

Systematics Association Special Volumes

inferred← citeshttps://doi.org/10.1071/sb15038openalex-snapshot

Phylogenomics of the green ash eucalypts (Myrtaceae): a tale of reticulate evolution and misidentification

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CAMUS: scalable phylogenetic network estimation

inferred← citeshttps://doi.org/10.1109/cyberc.2016.12openalex-snapshot

Inferring Phylogenetic Networks of Malware Families from API Sequences

inferred← citeshttps://doi.org/10.1134/s2079086422030045openalex-snapshot

Approaches to the Detection of Hybridization Events and Genetic Introgression upon Phylogenetic Incongruence

inferred← citeshttps://doi.org/10.1139/cjb-2021-0145openalex-snapshot

Origin of Symphyotrichum anticostense (Asteraceae, Astereae), an endemic, high polyploid species of the Gulf of St. Lawrence region, based on morphological and nrDNA evidence

inferred← citeshttps://doi.org/10.1146/annurev-phyto-080516-035326openalex-snapshot

Network Analysis: A Systems Framework to Address Grand Challenges in Plant Pathology

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The Diagrammatics of ‘Race’

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Introduction

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Part I. Building a Diagrammatics of ‘Race’ in the Emerging Field of Anthropology

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1. Esthetics, Diagrammatics, and Metrics

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2. Samuel George Morton and His (Paper) Skulls

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3. Kinship Denied and Acknowledged

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4. Prichard's Third Edition of Researches (1846-47) and Nott's and Gliddon's Types of Mankind (1854)

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5. Codifying a Diagrammatics of 'Race'

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Part II. Maps, Scales, and Trees as (Intertwined) Diagrams of Human Genealogy and Evolution

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6. The First Tree of the Human ‘Races’

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7. Map, Scale, and Tree in Natural History

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8. Map, Scale, and Tree in Darwin, Haeckel and Co.

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9. Map, Scale, and Tree in Darwin, Haeckel and Co.

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10. About Treeing…

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Part III. Radicalizing versus Deconstructing the Family Tree of the Human ‘Races’

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11. Denying Even the Tree-Structured Human Kinship

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12. Meandering Rivers and Synthetic Networks against Polygenism

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13. The Reaffirmation of the Polygenist ‘Tree’

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14. Cable or Tangled Skein?

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15. Missing Links to the Eugenic Pedigrees

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Part IV. The Tree, the Map, the Mosaic, and the Network in Genetic Anthropology

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16. The History, Geography, and Politics of Human Genes

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17. Genetic Trees, Admixture, and Mosaics

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18. Gene Flow and Ancient DNA: Trees with Connecting Branches

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19. The (Diagrammatic) Narratives of Genetic Revolutions

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20. Deconstructing the Tree Diagram to a Mess – or at least a Net

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Postscript

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References

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A reconstruction problem for a class of phylogenetic networks with lateral gene transfers

inferred← citeshttps://doi.org/10.3390/plants11121529openalex-snapshot

Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil

inferred← citeshttps://doi.org/10.48550/arxiv.1610.01674openalex-snapshot

Who is Who in Phylogenetic Networks: Articles, Authors and Programs

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Alignment-free Phylogenetic Placement and its Applications

inferred← citeshttps://doi.org/10.9734/air/2014/8485openalex-snapshot

Rooted Phylogenetic Networks for Exploratory Data Analysis

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.