On the public citation graph

Lineage‐specific vs. universal: A comparison of the Compositae1061 and Angiosperms353 enrichment panels in the sunflower family

https://doi.org/10.1002/aps3.11422
0 signed · 95 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ajb2.1682openalex-snapshot
Joining forces in Ochnaceae phylogenomics: a tale of two targeted sequencing probe kits
inferredcites →https://doi.org/10.1002/aps3.1038openalex-snapshot
Practical considerations for plant phylogenomics
inferredcites →https://doi.org/10.1002/aps3.11268openalex-snapshot
Development and characterization of microsatellite markers for Antennaria corymbosa (Asteraceae) and close relatives
inferredcites →https://doi.org/10.1002/aps3.11295openalex-snapshot
An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae
inferredcites →https://doi.org/10.1002/aps3.11345openalex-snapshot
A two‐tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae
inferredcites →https://doi.org/10.1002/aps3.11419openalex-snapshot
On the potential of Angiosperms353 for population genomic studies
inferredcites →https://doi.org/10.1002/aps3.11420openalex-snapshot
New targets acquired: Improving locus recovery from the Angiosperms353 probe set
inferredcites →https://doi.org/10.1002/aps3.11422openalex-snapshot
Lineage‐specific vs. universal: A comparison of the Compositae1061 and Angiosperms353 enrichment panels in the sunflower family
inferredcites →https://doi.org/10.1002/aps3.11438openalex-snapshot
The best of both worlds: Combining lineage‐specific and universal bait sets in target‐enrichment hybridization reactions
inferredcites →https://doi.org/10.1002/aps3.11442openalex-snapshot
Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae
inferredcites →https://doi.org/10.1002/tax.12235openalex-snapshot
The classification of the Compositae: A tribute to Vicki Ann Funk (1947–2019)
inferredcites →https://doi.org/10.1007/s00606-013-0767-0openalex-snapshot
Flow cytometric and karyological analyses of Calendula species from Iberian Peninsula
inferredcites →https://doi.org/10.1007/s40415-019-00569-4openalex-snapshot
Using genomic data to develop SSR markers for species of Chresta (Vernonieae, Asteraceae) from the Caatinga
inferredcites →https://doi.org/10.1016/j.plantsci.2010.07.019openalex-snapshot
High throughput DNA sequencing: The new sequencing revolution
inferredcites →https://doi.org/10.1016/j.tplants.2019.07.011openalex-snapshot
Hyb-Seq for Flowering Plant Systematics
inferredcites →https://doi.org/10.1016/j.ympev.2016.03.007openalex-snapshot
Macroevolutionary dynamics in the early diversification of Asteraceae
inferredcites →https://doi.org/10.1016/j.ympev.2018.07.012openalex-snapshot
Exploring data processing strategies in NGS target enrichment to disentangle radiations in the tribe Cardueae (Compositae)
inferredcites →https://doi.org/10.1016/j.ympev.2019.05.001openalex-snapshot
Nuclear and plastid DNA phylogeny of tribe Cardueae (Compositae) with Hyb-Seq data: A new subtribal classification and a temporal diversification framework
inferredcites →https://doi.org/10.1016/j.ympev.2021.107068openalex-snapshot
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes
inferredcites →https://doi.org/10.1038/nrg.2017.26openalex-snapshot
The evolutionary significance of polyploidy
inferredcites →https://doi.org/10.1038/s41467-019-08822-wopenalex-snapshot
Model selection may not be a mandatory step for phylogeny reconstruction
inferredcites →https://doi.org/10.1038/s41586-019-1693-2openalex-snapshot
One thousand plant transcriptomes and the phylogenomics of green plants
inferredcites →https://doi.org/10.1073/pnas.1903871116openalex-snapshot
A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae
inferredcites →https://doi.org/10.1080/17550874.2012.745909openalex-snapshot
Making next-generation sequencing work for you: approaches and practical considerations for marker development and phylogenetics
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv646openalex-snapshot
PHYLUCE is a software package for the analysis of conserved genomic loci
inferredcites →https://doi.org/10.1093/bioinformatics/btx063openalex-snapshot
Phyx: phylogenetic tools for unix
inferredcites →https://doi.org/10.1093/gigascience/giaa004openalex-snapshot
Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
inferredcites →https://doi.org/10.1093/molbev/msn187openalex-snapshot
Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msw157openalex-snapshot
Multiple Polyploidization Events across Asteraceae with Two Nested Events in the Early History Revealed by Nuclear Phylogenomics
inferredcites →https://doi.org/10.1093/sysbio/syy086openalex-snapshot
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
inferredcites →https://doi.org/10.1093/sysbio/syz078openalex-snapshot
Phylogenetic Conflicts, Combinability, and Deep Phylogenomics in Plants
inferredcites →https://doi.org/10.1101/2021.01.07.425781openalex-snapshot
Is Palmer’s elm leaf goldenrod real? The Angiosperms353 kit provides within-species signal in Solidago ulmifolia s.l
inferredcites →https://doi.org/10.1111/jse.12167openalex-snapshot
Using phylogenomics to resolve mega‐families: An example from Compositae
inferredcites →https://doi.org/10.1111/jse.12265openalex-snapshot
The Compositae Tree of Life in the age of phylogenomics
inferredcites →https://doi.org/10.1111/jse.12698openalex-snapshot
Phylogenomics of the hyperdiverse daisy tribes: Anthemideae, Astereae, Calenduleae, Gnaphalieae, and Senecioneae
inferredcites →https://doi.org/10.1111/jse.12711openalex-snapshot
Phylogenomics of Perityleae (Compositae) provides new insights into morphological and chromosomal evolution of the rock daisies
inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot
Automated generation of heuristics for biological sequence comparison
inferredcites →https://doi.org/10.1186/1471-2164-12-370openalex-snapshot
Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata)
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1186/s12862-015-0423-0openalex-snapshot
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
inferredcites →https://doi.org/10.1600/036364420x15862837791221openalex-snapshot
Phylogenomics Resolves the Relationships within Antennaria (Asteraceae, Gnaphalieae) and Yields New Insights into its Morphological Character Evolution and Biogeography
inferredcites →https://doi.org/10.3389/fpls.2019.01102openalex-snapshot
Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms
inferredcites →https://doi.org/10.3389/fpls.2019.01161openalex-snapshot
Hidden Rice Diversity in the Guianas
inferredcites →https://doi.org/10.3389/fpls.2019.01224openalex-snapshot
Phylogenomics Yields New Insight Into Relationships Within Vernonieae (Asteraceae)
inferredcites →https://doi.org/10.3389/fpls.2019.01655openalex-snapshot
Tackling Rapid Radiations With Targeted Sequencing
inferredcites →https://doi.org/10.3389/fpls.2020.00258openalex-snapshot
Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics
inferredcites →https://doi.org/10.3732/ajb.1100335openalex-snapshot
Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
inferredcites →https://doi.org/10.3732/ajb.1500320openalex-snapshot
The wondrous cycles of polyploidy in plants
inferredcites →https://doi.org/10.3732/ajb.1600113openalex-snapshot
Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae
inferredcites →https://doi.org/10.3732/apps.1300085openalex-snapshot
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae
inferredcites →https://doi.org/10.3732/apps.1600016openalex-snapshot
HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
inferredcites →https://doi.org/10.7717/peerj.1660openalex-snapshot
AMAS: a fast tool for alignment manipulation and computing of summary statistics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4757412openalex-extracted
Phylogenomics of the Bupleurum in East Asia: Species Distribution Patterns and Diversification
inferred← citeshttps://doi.org/10.1002/ajb2.1678openalex-snapshot
Using target sequence capture to improve the phylogenetic resolution of a rapid radiation in New Zealand Veronica
inferred← citeshttps://doi.org/10.1002/ajb2.1703openalex-snapshot
Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants
inferred← citeshttps://doi.org/10.1002/aps3.11443openalex-snapshot
Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics
inferred← citeshttps://doi.org/10.1002/aps3.11537openalex-snapshot
Target capture and genome skimming for plant diversity studies
inferred← citeshttps://doi.org/10.1002/aps3.11554openalex-snapshot
A target enrichment probe set for resolving phylogenetic relationships in the coffee family, Rubiaceae
inferred← citeshttps://doi.org/10.1002/aps3.11557openalex-snapshot
Calceolariaceae809: A bait set for targeted sequencing of nuclear loci
inferred← citeshttps://doi.org/10.1002/aps3.11568openalex-snapshot
Compositae‐ParaLoss‐1272: A complementary sunflower‐specific probe set reduces paralogs in phylogenomic analyses of complex systems
inferred← citeshttps://doi.org/10.1002/aps3.11580openalex-snapshot
A roadmap of phylogenomic methods for studying polyploid plant genera
inferred← citeshttps://doi.org/10.1002/aps3.70024openalex-snapshot
Astragalean819: An Astragalean clade‐specific bait set to resolve phylogenetic relationships in Astragalus
inferred← citeshttps://doi.org/10.1007/s44281-023-00026-zopenalex-snapshot
Integrating genomic sequencing resources: an innovative perspective on recycling with universal Angiosperms353 probe sets
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108064openalex-snapshot
Phylogenomics and morphology of Celmisiinae (Asteraceae: Astereae): Taxonomic and evolutionary implications
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108285openalex-snapshot
A thorny tale: The origin and diversification of Cirsium (Compositae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108628openalex-snapshot
Phylogenomics of Melastomataceae: rooting out discordance across organellar and nuclear genomes
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108687openalex-snapshot
Integrating lineage-specific and universal genomic probes illuminates phylogenetic relationships and molecular evolution in Sauvagesieae (Ochnaceae)
inferred← citeshttps://doi.org/10.1071/sb24011openalex-snapshot
Navigating phylogenetic conflict and evolutionary inference in plants with target-capture data
inferred← citeshttps://doi.org/10.1093/aob/mcac046openalex-snapshot
Increased resolution in the face of conflict: phylogenomics of the Neotropical bellflowers (Campanulaceae: Lobelioideae), a rapid plant radiation
inferred← citeshttps://doi.org/10.1093/aob/mcad153openalex-snapshot
Unravelling phylogenetic relationships of the tribe Cereeae using target enrichment sequencing
inferred← citeshttps://doi.org/10.1093/aob/mcaf232openalex-snapshot
Evolutionary history of Australian samphires (Salicornieae, Amaranthaceae)
inferred← citeshttps://doi.org/10.1093/botlinnean/boac032openalex-snapshot
Asteraceae as a model system for evolutionary studies: from fossils to genomes
inferred← citeshttps://doi.org/10.1093/sysbio/syag041openalex-snapshot
Phylogenomic Challenges in Polyploid-Rich Lineages: Insights from Paralog Processing and Reticulation Methods Using the Complex Genus Packera (Asteraceae: Senecioneae)
inferred← citeshttps://doi.org/10.1111/1755-0998.13666openalex-snapshot
A target capture approach for phylogenomic analyses at multiple evolutionary timescales in rosewoods ( Dalbergia spp.) and the legume family (Fabaceae)
inferred← citeshttps://doi.org/10.1111/1755-0998.70173openalex-snapshot
Enrichment Probe Sets Combining Universal and Lineage‐Specific Targets Help Resolve Recalcitrant Lineages
inferred← citeshttps://doi.org/10.1111/eva.70315openalex-snapshot
Tracing Species Boundaries Through Genomic Baits: Diagnostic SNP Panels for Genotyping Orchid Pollinaria
inferred← citeshttps://doi.org/10.1111/jse.13118openalex-snapshot
A phylogenomic approach to disentangling the evolution of the large and diverse daisy tribe Anthemideae (Asteraceae)
inferred← citeshttps://doi.org/10.1111/jse.70074openalex-snapshot
Refining generic limits in Hyacinthinae (Asparagaceae, Scilloideae): Conflict and concordance between morphology and phylogenomics
inferred← citeshttps://doi.org/10.1600/036364425x17637402353510openalex-snapshot
A Phylogenomic Investigation of Species Diversity, Morphology, and Biogeography in Neptunia (Fabaceae: Caesalpinioideae: Mimoseae)
inferred← citeshttps://doi.org/10.3389/fpls.2021.765719openalex-snapshot
How to Tackle Phylogenetic Discordance in Recent and Rapidly Radiating Groups? Developing a Workflow Using Loricaria (Asteraceae) as an Example
inferred← citeshttps://doi.org/10.3389/fpls.2022.851716openalex-snapshot
New Insights Into the Relationships Within Subtribe Scorzonerinae (Cichorieae, Asteraceae) Using Hybrid Capture Phylogenomics (Hyb-Seq)
inferred← citeshttps://doi.org/10.3390/genes13020350openalex-snapshot
A New Approach Using Targeted Sequence Capture for Phylogenomic Studies across Cactaceae
inferred← citeshttps://doi.org/10.3390/genes13040707openalex-snapshot
A target Capture Probe Set Useful for Deep- and Shallow-Level Phylogenetic Studies in Cactaceae
inferred← citeshttps://doi.org/10.3390/ijms242115634openalex-snapshot
Chloroplast Genomes and Phylogenetic Analysis of Three Carthamus (Asteraceae) Species
inferred← citeshttps://doi.org/10.64898/2026.02.20.707031openalex-snapshot
SPrOUT: A computational and targeted sequencing approach for mixed plant DNA identification with Angiosperms353
inferred← citeshttps://doi.org/10.7287/peerj.12418v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Phylogeny of Crataegus (Rosaceae) based on 257 nuclear loci and chloroplast genomes: evaluating the impact of hybridization (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12418v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Phylogeny of Crataegus (Rosaceae) based on 257 nuclear loci and chloroplast genomes: evaluating the impact of hybridization (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12418v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Phylogeny of Crataegus (Rosaceae) based on 257 nuclear loci and chloroplast genomes: evaluating the impact of hybridization (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.12418openalex-snapshot
Phylogeny of Crataegus (Rosaceae) based on 257 nuclear loci and chloroplast genomes: evaluating the impact of hybridization
showing the first 37 of 38 · page through all 38
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.