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Unravelling phylogenetic relationships of the tribe Cereeae using target enrichment sequencing
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales
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Phylogenomics in Cactaceae: A case study using the chollas sensu lato (Cylindropuntieae, Opuntioideae) reveals a common pattern out of the Chihuahuan and Sonoran deserts
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Quaternary diversification of a columnar cactus in the driest place on earth
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Pleistocene aridification underlies the evolutionary history of the Caribbean endemic, insular, giant Consolea (Opuntioideae)
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Revisiting phylogeny, systematics, and biogeography of a Pleistocene radiation
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Target sequence capture in orchids: Developing a kit to sequence hundreds of single‐copy loci
inferredcites →https://doi.org/10.1002/aps3.11422openalex-snapshot
Lineage‐specific vs. universal: A comparison of the Compositae1061 and Angiosperms353 enrichment panels in the sunflower family
inferredcites →https://doi.org/10.1002/aps3.11442openalex-snapshot
Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae
inferredcites →https://doi.org/10.1002/tax.12451openalex-snapshot
Molecular phylogeny of the Mammilloid clade (Cactaceae) resolves the monophyly of Mammillaria
inferredcites →https://doi.org/10.1002/tax.12791openalex-snapshot
Phylogenomics of the Caribbean melocacti: Cryptic species and multiple invasions
inferredcites →https://doi.org/10.1007/s00425-021-03690-5openalex-snapshot
The genome of a thorny species: comparative genomic analysis among South and North American Cactaceae
inferredcites →https://doi.org/10.1007/s00606-016-1296-4openalex-snapshot
Molecular phylogenetic relationships of the Andean genus Aylostera Speg. (Cactaceae, Trichocereeae), a new classification and a morphological identification key
inferredcites →https://doi.org/10.1007/s006060200017openalex-snapshot
Deletions in the plastid trn T- trn L intergenic spacer define clades within Cactaceae subfamily Cactoideae
inferredcites →https://doi.org/10.1016/j.biocon.2022.109677openalex-snapshot
Spatial patterns of evolutionary diversity in Cactaceae show low ecological representation within protected areas
inferredcites →https://doi.org/10.1016/j.ympev.2019.106642openalex-snapshot
Maintaining genetic integrity with high promiscuity: Frequent hybridization with low introgression in multiple hybrid zones of Melocactus (Cactaceae)
inferredcites →https://doi.org/10.1016/j.ympev.2020.106896openalex-snapshot
The potential of genome-wide RAD sequences for resolving rapid radiations: a case study in Cactaceae
inferredcites →https://doi.org/10.1016/j.ympev.2021.107068openalex-snapshot
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes
inferredcites →https://doi.org/10.1016/j.ympev.2021.107123openalex-snapshot
New genetic markers for Sapotaceae phylogenomics: More than 600 nuclear genes applicable from family to population levels
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/nplants.2015.142openalex-snapshot
High proportion of cactus species threatened with extinction
inferredcites →https://doi.org/10.1038/s41477-022-01130-0openalex-snapshot
Elevated extinction risk of cacti under climate change
inferredcites →https://doi.org/10.1073/pnas.1100628108openalex-snapshot
Contemporaneous and recent radiations of the world's major succulent plant lineages
inferredcites →https://doi.org/10.1073/pnas.1706367114openalex-snapshot
Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti
inferredcites →https://doi.org/10.1093/aob/mcac046openalex-snapshot
Increased resolution in the face of conflict: phylogenomics of the Neotropical bellflowers (Campanulaceae: Lobelioideae), a rapid plant radiation
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btx063openalex-snapshot
Phyx: phylogenetic tools for unix
inferredcites →https://doi.org/10.1093/botlinnean/boab070openalex-snapshot
Hybridisation: A ‘double-edged sword’ for neotropical plant diversity
inferredcites →https://doi.org/10.1093/botlinnean/bow010openalex-snapshot
Plio-Pleistocene diversification of Cereus (Cactaceae, Cereeae) and closely allied genera
inferredcites →https://doi.org/10.1093/genetics/iyab173openalex-snapshot
Phylogenomic approaches to detecting and characterizing introgression
inferredcites →https://doi.org/10.1093/jhered/esy064openalex-snapshot
Phylogenetic Relationships and Evolutionary Trends in the Cactus Family
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
inferredcites →https://doi.org/10.1093/molbev/msab151openalex-snapshot
Phylogenomic Subsampling and the Search for Phylogenetically Reliable Loci
inferredcites →https://doi.org/10.1093/molbev/msac215openalex-snapshot
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msw079openalex-snapshot
Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot
UFBoot2: Improving the Ultrafast Bootstrap Approximation
inferredcites →https://doi.org/10.1093/molbev/msy200openalex-snapshot
Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments
inferredcites →https://doi.org/10.1093/sysbio/syaa066openalex-snapshot
Disentangling Sources of Gene Tree Discordance in Phylogenomic Data Sets: Testing Ancient Hybridizations in Amaranthaceae s.l
inferredcites →https://doi.org/10.1093/sysbio/syaa083openalex-snapshot
The Perfect Storm: Gene Tree Estimation Error, Incomplete Lineage Sorting, and Ancient Gene Flow Explain the Most Recalcitrant Ancient Angiosperm Clade, Malpighiales
inferredcites →https://doi.org/10.1093/sysbio/syab035openalex-snapshot
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1111/1755-0998.13523openalex-snapshot
Taxon‐specific or universal? Using target capture to study the evolutionary history of rapid radiations
inferredcites →https://doi.org/10.1111/2041-210x.13392openalex-snapshot
SuperCRUNCH: A bioinformatics toolkit for creating and manipulating supermatrices and other large phylogenetic datasets
inferredcites →https://doi.org/10.1111/j.1096-0031.2011.00350.xopenalex-snapshot
Molecular systematics of the Cactaceae
inferredcites →https://doi.org/10.1111/jbi.13107openalex-snapshot
The impact of early Quaternary climate change on the diversification and population dynamics of a South American cactus species
inferredcites →https://doi.org/10.1111/jbi.13481openalex-snapshot
Bayesian spatio‐temporal reconstruction reveals rapid diversification and Pleistocene range expansion in the widespread columnar cactus Pilosocereus
inferredcites →https://doi.org/10.1111/jbi.14265openalex-snapshot
Tracking the xeric biomes of South America: The spatiotemporal diversification of Mandacaru cactus
inferredcites →https://doi.org/10.1111/nph.12752openalex-snapshot
Beyond aridification: multiple explanations for the elevated diversification of cacti in the New World Succulent Biome
inferredcites →https://doi.org/10.1186/s12862-015-0423-0openalex-snapshot
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants
inferredcites →https://doi.org/10.1186/s13007-017-0234-yopenalex-snapshot
Improved method for genomic DNA extraction for Opuntia Mill. (Cactaceae)
inferredcites →https://doi.org/10.1186/s13104-016-1900-2openalex-snapshot
AdapterRemoval v2: rapid adapter trimming, identification, and read merging
inferredcites →https://doi.org/10.1371/journal.pgen.0020068openalex-snapshot
Discordance of Species Trees with Their Most Likely Gene Trees
inferredcites →https://doi.org/10.1371/journal.pone.0206085openalex-snapshot
Fast and inexpensive protocols for consistent extraction of high quality DNA and RNA from challenging plant and fungal samples for high-throughput SNP genotyping and sequencing applications
inferredcites →https://doi.org/10.1600/036364413x662105openalex-snapshot
Phylogeny, Biogeography, and Infrageneric Classification of Harrisia (Cactaceae)
inferredcites →https://doi.org/10.1600/036364421x16312068417020openalex-snapshot
A New Phylogenetic Hypothesis for Cereinae (Cactaceae) Points to a Monophyletic Subtribe
inferredcites →https://doi.org/10.2307/25065407openalex-snapshot
The Families and Genera of Vascular Plants
inferredcites →https://doi.org/10.25223/brad.n12.1994.a2openalex-snapshot
Spontaneous Bigeneric Hybrids in Cactaceae
inferredcites →https://doi.org/10.25223/brad.n26.2008.a1openalex-snapshot
What is the role of hybridization in the evolution of the Cactaceae?
inferredcites →https://doi.org/10.25223/brad.n38.2020.a22openalex-snapshot
Annotated checklist of Cactaceae in the Catimbau National Park, Pernambuco, Brazil*
inferredcites →https://doi.org/10.25223/brad.n7.1989.a2openalex-snapshot
An alternative view of generic delimitation and relationships in tribe Cereeae (Cactaceae)
inferredcites →https://doi.org/10.2985/026.027.0112openalex-snapshot
Examination of Reticulate Evolution Involving Haageocereus and Espostoa
inferredcites →https://doi.org/10.3372/wi.45.45301openalex-snapshot
A taxonomic backbone for the global synthesis of species diversity in the angiosperm order Caryophyllales
inferredcites →https://doi.org/10.3372/wi.51.51208openalex-snapshot
Cactaceae at Caryophyllales.org – a dynamic online species-level taxonomic backbone for the family
inferredcites →https://doi.org/10.3390/genes13020350openalex-snapshot
A New Approach Using Targeted Sequence Capture for Phylogenomic Studies across Cactaceae
inferredcites →https://doi.org/10.3390/genes13030452openalex-snapshot
Evolutionary Genetics of Cacti: Research Biases, Advances and Prospects
inferredcites →https://doi.org/10.3390/genes13040707openalex-snapshot
A target Capture Probe Set Useful for Deep- and Shallow-Level Phylogenetic Studies in Cactaceae
inferredcites →https://doi.org/10.3390/genes13050745openalex-snapshot
Pitaya Genome and Multiomics Database (PGMD): A Comprehensive and Integrative Resource of Selenicereus undatus
inferredcites →https://doi.org/10.3732/ajb.1000129openalex-snapshot
Phylogenetic relationships and evolution of growth form in Cactaceae (Caryophyllales, Eudicotyledoneae)
inferredcites →https://doi.org/10.3732/ajb.1100054openalex-snapshot
Molecular phylogeny of Gymnocalycium (Cactaceae): Assessment of alternative infrageneric systems, a new subgenus, and trends in the evolution of the genus
inferredcites →https://doi.org/10.3732/ajb.1100288openalex-snapshot
Molecular phylogenetics of Echinopsis (Cactaceae): Polyphyly at all levels and convergent evolution of pollination modes and growth forms
inferredcites →https://doi.org/10.3732/ajb.89.2.312openalex-snapshot
Phylogenetic relationships in the cactus family (Cactaceae) based on evidence from trn K / mat K and trn L‐trn F sequences
inferredcites →https://doi.org/10.3732/ajb.92.7.1177openalex-snapshot
Basal cactus phylogeny: implications of Pereskia (Cactaceae) paraphyly for the transition to the cactus life form
inferredcites →https://doi.org/10.3732/ajb.94.8.1321openalex-snapshot
The molecular phylogeny of Rebutia (Cactaceae) and its allies demonstrates the influence of paleogeography on the evolution of South American mountain cacti
inferredcites →https://doi.org/10.3732/apps.1600016openalex-snapshot
HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
inferredcites →https://doi.org/10.5167/uzh-43285openalex-snapshot
A farewell to dated ideas and concepts: molecular phylogenetics and a revised suprageneric classification of the family Cactaceae
inferredcites →https://doi.org/10.5167/uzh-93287openalex-snapshot
South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae)
inferredcites →https://doi.org/10.7717/peerj.1660openalex-snapshot
AMAS: a fast tool for alignment manipulation and computing of summary statistics
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/phytotaxa.684.1.8zenodo-depositor-declared
Arrojadoa bahiensis subsp. minutiflora (Cactaceae, Cactoideae), a new subspecies from the Brazilian flora
inferred← citeshttps://doi.org/10.1002/tax.13206openalex-snapshot
A microendemic and enigmatic new cactus species from the campo rupestre of Minas Gerais, Brazil: Uebelmannia nuda (Cactaceae, Cactoideae)
inferred← citeshttps://doi.org/10.1002/tax.13311openalex-snapshot
Systematic and taxonomic revision of the genus Austrocactus (Cactaceae) based on morphology and genome wide SNP ‐data
inferred← citeshttps://doi.org/10.1002/tax.70206openalex-snapshot
Museomic phylogenomics of Orthosiinae (Apocynaceae) integrating targeted sequencing and morphology
inferred← citeshttps://doi.org/10.1007/s00606-025-01948-zopenalex-snapshot
Phylogenomics and classification of Cactaceae based on hundreds of nuclear genes
inferred← citeshttps://doi.org/10.1007/s00709-026-02268-wopenalex-snapshot
Floral morphoanatomy in Gymnocalycium (Cactaceae): Phylogenetic insights from structural analysis
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108714openalex-snapshot
From Andes to the dry diagonal: phylogenomics and trait evolution elucidate the radiation of cacti in South American drylands
inferred← citeshttps://doi.org/10.1093/aob/mcag209openalex-snapshot
Phylogenomics and trait evolution illuminate the diversification and systematics of Discocactus (Cactaceae)
inferred← citeshttps://doi.org/10.1093/botlinnean/boaf047openalex-snapshot
Rediscovery and phylogenomic placement of Feliciadamia stenocarpa (Feliciadamieae: Melastomataceae): assessing gene tree discordance
inferred← citeshttps://doi.org/10.1111/jse.13151openalex-snapshot
Phylogenomics shed light on the complex evolutionary history of a gymnosperm genus showing East Asian–Tethyan disjunction
inferred← citeshttps://doi.org/10.1600/036364425x17466502618849openalex-snapshot
Phylogenomic and Ecological Systematics of Melocactus (Cactaceae)
inferred← citeshttps://doi.org/10.25223/brad.n42.2024.a11openalex-snapshot
Additions and corrections to Cacti of Eastern Brazil (4)
inferred← citeshttps://doi.org/10.25223/brad.n42.2024.a5openalex-snapshot
Arrojadoa luetzelburgioides, a new species allied to A. multiflora (Cactaceae) and a key to the recently expanded genus
inferred← citeshttps://doi.org/10.25223/brad.n43.2025.a7openalex-snapshot
The discovery of dioecious Leuenbergeria lychnidiflora (DC.) Lodé (Cactaceae) in Guatemala
inferred← citeshttps://doi.org/10.25223/brad.n44.2026.a12openalex-snapshot
The correct name for Siccobaccatus estevesii when transferred to Coleocephalocereus Backeb. (Cactaceae-Cereeae-Cereinae)
inferred← citeshttps://doi.org/10.25223/brad.n44.2026.a8openalex-snapshot
Cactaceae of Goiás and the Distrito Federal, Brazil
inferred← citeshttps://doi.org/10.3389/fpls.2025.1602041openalex-snapshot
Utilizing target capture sequencing to resolve the speciation history of Echinacea (Asteraceae)
inferred← citeshttps://doi.org/10.3390/ijms27167166openalex-snapshot
Nuclear Ribosomal ITS1–5.8S rDNA-ITS2 Region as a Phylogenetic Marker for Selenicereus grandiflorus and Related Species (Cactaceae: Cactoideae: Phyllocacteae)
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