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Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.4809openalex-snapshot

Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods

inferredcites →https://doi.org/10.1002/jcp.1041360316openalex-snapshot

Mitochondrial DNA molecules and virtual number of mitochondria per cell in mammalian cells

inferredcites →https://doi.org/10.1002/jcp.1041430122openalex-snapshot

Distinct genomic copy number in mitochondria of different mammalian organs

inferredcites →https://doi.org/10.1002/rra.3610openalex-snapshot

Reference databases, primer choice, and assay sensitivity for environmental metabarcoding: Lessons learnt from a re‐evaluation of an eDNA fish assessment in the Volga headwaters

inferredcites →https://doi.org/10.1007/s00227-017-3147-4openalex-snapshot

Seawater environmental DNA reflects seasonality of a coastal fish community

inferredcites →https://doi.org/10.1016/0379-0738(88)90118-1openalex-snapshot

Postmortem stability of DNA

inferredcites →https://doi.org/10.1016/j.bbagen.2005.03.001openalex-snapshot

Quantitative change in mitochondrial DNA content in various mouse tissues during aging

inferredcites →https://doi.org/10.1016/j.biocon.2014.11.019openalex-snapshot

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

inferredcites →https://doi.org/10.1016/j.scitotenv.2018.05.002openalex-snapshot

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

inferredcites →https://doi.org/10.1016/j.tree.2014.04.003openalex-snapshot

Environmental DNA for wildlife biology and biodiversity monitoring

inferredcites →https://doi.org/10.1071/sb18057openalex-snapshot

Genome skimming provides well resolved plastid and nuclear phylogenies, showing patterns of deep reticulate evolution in the tropical carnivorous plant genus Nepenthes (Caryophyllales)

inferredcites →https://doi.org/10.1073/pnas.1911714116openalex-snapshot

GenBank is a reliable resource for 21st century biodiversity research

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot

BEDTools: a flexible suite of utilities for comparing genomic features

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/gigascience/gix049openalex-snapshot

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

inferredcites →https://doi.org/10.1093/gigascience/gix053openalex-snapshot

An expanded mammal mitogenome dataset from Southeast Asia

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/nar/gkr771openalex-snapshot

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

inferredcites →https://doi.org/10.1093/nar/gkx1094openalex-snapshot

GenBank

inferredcites →https://doi.org/10.1093/nar/gkz173openalex-snapshot

MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization

inferredcites →https://doi.org/10.1098/rsbl.2003.0025openalex-snapshot

Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species

inferredcites →https://doi.org/10.1098/rsbl.2014.0562openalex-snapshot

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

inferredcites →https://doi.org/10.1098/rsos.150088openalex-snapshot

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

inferredcites →https://doi.org/10.1098/rspb.2012.1745openalex-snapshot

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

inferredcites →https://doi.org/10.1101/125724openalex-snapshot

Index switching causes “spreading-of-signal” among multiplexed samples in Illumina HiSeq 4000 DNA sequencing

inferredcites →https://doi.org/10.1111/1755-0998.12265openalex-snapshot

Environmental metabarcodes for insects: in silico PCR reveals potential for taxonomic bias

inferredcites →https://doi.org/10.1111/1755-0998.12960openalex-snapshot

Promises and pitfalls of using high‐throughput sequencing for diet analysis

inferredcites →https://doi.org/10.1111/2041-210x.12871openalex-snapshot

Single‐tube library preparation for degraded DNA

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05418.xopenalex-snapshot

Monitoring endangered freshwater biodiversity using environmental DNA

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05470.xopenalex-snapshot

Towards next‐generation biodiversity assessment using DNA metabarcoding

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05542.xopenalex-snapshot

Environmental DNA

inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01678.xopenalex-snapshot

bold : The Barcode of Life Data System (http://www.barcodinglife.org)

inferredcites →https://doi.org/10.1111/jse.12533openalex-snapshot

Exploring the potential of nuclear and mitochondrial sequencing data generated through genome‐skimming for plant phylogenetics: A case study from a clade of neotropical lianas

inferredcites →https://doi.org/10.1111/mec.13549openalex-snapshot

From barcodes to genomes: extending the concept of DNA barcoding

inferredcites →https://doi.org/10.1186/s13007-019-0534-5openalex-snapshot

Large scale genome skimming from herbarium material for accurate plant identification and phylogenomics

inferredcites →https://doi.org/10.1186/s13059-019-1632-4openalex-snapshot

Skmer: assembly-free and alignment-free sample identification using genome skims

inferredcites →https://doi.org/10.1371/journal.pone.0041781openalex-snapshot

Investigating the Potential Use of Environmental DNA (eDNA) for Genetic Monitoring of Marine Mammals

inferredcites →https://doi.org/10.1371/journal.pone.0072853openalex-snapshot

Control Control Control: A Reassessment and Comparison of GenBank and Chromatogram mtDNA Sequence Variation in Baltic Grey Seals (Halichoerus grypus)

inferredcites →https://doi.org/10.1371/journal.pone.0126935openalex-snapshot

Differential Nuclear and Mitochondrial DNA Preservation in Post-Mortem Teeth with Implications for Forensic and Ancient DNA Studies

inferredcites →https://doi.org/10.1371/journal.pone.0179261openalex-snapshot

Monitoring of noble, signal and narrow-clawed crayfish using environmental DNA from freshwater samples

inferredcites →https://doi.org/10.1371/journal.pone.0217084openalex-snapshot

Assessment of BOLD and GenBank – Their accuracy and reliability for the identification of biological materials

inferredcites →https://doi.org/10.18926/amo/47011openalex-snapshot

Quantitative analysis of DNA degradation in the dead body.

inferredcites →https://doi.org/10.3389/fmicb.2019.00697openalex-snapshot

Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must

inferredcites →https://doi.org/10.3390/plants9040432openalex-snapshot

The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Molecular systematics of Perinereis and an investigation of the status and relationships of the cultured species Perinereis wilsoni Glasby & Hsieh, 2006 (Annelida, Nereididae)

inferred← citeshttps://doi.org/10.1002/ece3.70556openalex-snapshot

The Core of the Matter—Importance of Identification Method and Biological Replication for Benthic Marine Monitoring

inferred← citeshttps://doi.org/10.1002/ece3.70956openalex-snapshot

Mitogenomic Analysis of Glirids (Gliridae) and Squirrels (Sciuridae) From Türkiye: Evolutionary and Taxonomic Implications Within the Suborder Sciuromorpha

inferred← citeshttps://doi.org/10.1002/ece3.8991openalex-snapshot

Shotgun metagenomics of soil invertebrate communities reflects taxonomy, biomass, and reference genome properties

inferred← citeshttps://doi.org/10.1002/ece3.9672openalex-snapshot

The global depth range of marine fishes and their genetic coverage for environmental DNA metabarcoding

inferred← citeshttps://doi.org/10.1002/edn3.285openalex-snapshot

Short‐term temporal variation of coastal marine eDNA

inferred← citeshttps://doi.org/10.1002/edn3.313openalex-snapshot

Home is where the hollow is: Revealing vertebrate tree hollow user biodiversity with eDNA metabarcoding

inferred← citeshttps://doi.org/10.1002/edn3.399openalex-snapshot

Monitoring the birds and the bees: Environmental DNA metabarcoding of flowers detects plant–animal interactions

inferred← citeshttps://doi.org/10.1007/978-1-0716-3581-0_16openalex-snapshot

Analyses of Nuclear Reads Obtained Using Genome Skimming

inferred← citeshttps://doi.org/10.1007/978-3-031-07055-6_13openalex-snapshot

Environmental DNA for Biodiversity Monitoring of Coral Reefs

inferred← citeshttps://doi.org/10.1007/s12686-025-01383-9openalex-snapshot

Historical genomic variation of Eurasian otters (Lutra lutra) in Britain, from hunting trophies

inferred← citeshttps://doi.org/10.1007/s13237-022-00393-4openalex-snapshot

Mitochondrial genes as strong molecular markers for species identification

inferred← citeshttps://doi.org/10.1016/b978-0-323-91601-1.00004-3openalex-snapshot

Environmental DNA: Revolutionizing ecological assessments with genomics

inferred← citeshttps://doi.org/10.1016/bs.apar.2026.05.002openalex-snapshot

Rethinking soil-transmitted helminth diagnostics in the genomic era: Does genetic variation matter?

inferred← citeshttps://doi.org/10.1016/j.fawpar.2022.e00183openalex-snapshot

Environmental DNA in human and veterinary parasitology - Current applications and future prospects for monitoring and control

inferred← citeshttps://doi.org/10.1016/j.marpolbul.2022.113860openalex-snapshot

The use of environmental DNA to monitor impacted coastal estuaries

inferred← citeshttps://doi.org/10.1016/j.marpolbul.2024.117242openalex-snapshot

Bridging the gaps through environmental DNA: A review of critical considerations for interpreting the biodiversity data in coral reef ecosystems

inferred← citeshttps://doi.org/10.1016/j.ygeno.2022.110297openalex-snapshot

Mitogenomics of the suborder Cottoidei (Teleostei: Perciformes): Improved assemblies, mitogenome features, phylogeny, and ecological implications

inferred← citeshttps://doi.org/10.1038/s41598-026-45984-2openalex-snapshot

Genetic diversity and phylogeography of Chimaera monstrosa (Linnaeus, 1758) in the Mediterranean Sea: insights from COI mitochondrial DNA analysis

inferred← citeshttps://doi.org/10.1038/s41598-026-65517-1openalex-snapshot

Towards whole plastome phylogeography: resolving small genetic distances among European Arnica montana L. with the PlastidPipeline

inferred← citeshttps://doi.org/10.1080/08912963.2026.2663153openalex-snapshot

Ancient DNA elucidates the Quaternary history of the long-eared bats ( Plecotus , Chiroptera: Vespertilionidae) in Central Europe

inferred← citeshttps://doi.org/10.1080/19768354.2023.2283763openalex-snapshot

Mitochondrial genome-based synthesis and timeline of Eurasian otter ( Lutra lutra ) phylogeography

inferred← citeshttps://doi.org/10.1080/23802359.2025.2460779openalex-snapshot

The complete mitochondrial genome of the common dace Leuciscus leuciscus (Teleostei: Leuciscidae)

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Characterization of the mitochondrial genome and phylogenetic position of the Varied Solitaire Myadestes coloratus (Passeriformes: Turdidae)

inferred← citeshttps://doi.org/10.1093/jhered/esaf068openalex-snapshot

From environmental DNA into actionable biodiversity data: Towards the implementation of the Kunming-Montreal Global Biodiversity Framework

inferred← citeshttps://doi.org/10.1093/molbev/msad207openalex-snapshot

Genomics Reveals Complex Population History and Unexpected Diversity of Eurasian Otters (Lutra lutra) in Britain Relative to Genetic Methods

inferred← citeshttps://doi.org/10.1093/nargab/lqab071openalex-snapshot

CONSULT: accurate contamination removal using locality-sensitive hashing

inferred← citeshttps://doi.org/10.1101/2021.08.11.456029openalex-snapshot

Towards the extended barcode concept: Generating DNA reference data through genome skimming of danish plants

inferred← citeshttps://doi.org/10.1111/1755-0998.13758openalex-snapshot

Affordable de novo generation of fish mitogenomes using amplification‐free enrichment of mitochondrial DNA and deep sequencing of long fragments

inferred← citeshttps://doi.org/10.1111/1755-0998.13840openalex-snapshot

Airborne environmental DNA captures terrestrial vertebrate diversity in nature

inferred← citeshttps://doi.org/10.1111/1755-0998.14095openalex-snapshot

Genome and Metagenome Skimming: Future Sequencing Methods for Environmental DNA ( eDNA ) Studies

inferred← citeshttps://doi.org/10.1111/2041-210x.13990openalex-snapshot

Iteratively mapping ancient DNA to reconstruct highly divergent mitochondrial genomes: An evaluation of software, parameters and bait reference

inferred← citeshttps://doi.org/10.1146/annurev-phyto-121823-085551openalex-snapshot

Genome Biology of Rust Fungi

inferred← citeshttps://doi.org/10.1371/journal.pone.0256353openalex-snapshot

Uncovering the genomic and metagenomic research potential in old ethanol-preserved snakes

inferred← citeshttps://doi.org/10.21425/f5fbg62301openalex-snapshot

From Korean to northeast Asian endemicity: on the occurrence of Pelophylax chosenicus along the Eastern Coastal Yellow Sea

inferred← citeshttps://doi.org/10.3389/fgene.2021.685806openalex-snapshot

Extension of Mitogenome Enrichment Based on Single Long-Range PCR: mtDNAs and Putative Mitochondrial-Derived Peptides of Five Rodent Hibernators

inferred← citeshttps://doi.org/10.3389/frish.2024.1354791openalex-snapshot

On the genetic diversity of Chimaera monstrosa Linnaeus, 1758 (Chordata, Chondrichthyes, Holocephali) in the Mediterranean Sea

inferred← citeshttps://doi.org/10.3897/zookeys.1129.91543openalex-snapshot

Genome-wide survey reveals the phylogenomic relationships of Chirolophis japonicus Herzenstein, 1890 (Stichaeidae, Perciformes)

inferred← citeshttps://doi.org/10.7287/peerj.13790v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Skimming for barcodes: rapid production of mitochondrial genome and nuclear ribosomal repeat reference markers through shallow shotgun sequencing (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.13790v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Skimming for barcodes: rapid production of mitochondrial genome and nuclear ribosomal repeat reference markers through shallow shotgun sequencing (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.13790v0.1/reviews/3openalex-snapshot

Peer Review #3 of "Skimming for barcodes: rapid production of mitochondrial genome and nuclear ribosomal repeat reference markers through shallow shotgun sequencing (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.13790v0.2/reviews/1openalex-snapshot

Peer Review #1 of "Skimming for barcodes: rapid production of mitochondrial genome and nuclear ribosomal repeat reference markers through shallow shotgun sequencing (v0.2)"

inferred← citeshttps://doi.org/10.7717/peerj.13790openalex-snapshot

Skimming for barcodes: rapid production of mitochondrial genome and nuclear ribosomal repeat reference markers through shallow shotgun sequencing

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