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The Structure and Function of the Human Small Intestinal Microbiota: Current Understanding and Future Directions

https://doi.org/10.1016/j.jcmgh.2019.07.006

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Breath Hydrogen Test in the Diagnosis of Environmental Enteropathy in Children Living in an Urban Slum

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Stagnant loop syndrome resulting from small-bowel irradiation injury and intestinal by-pass

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Physiological responses of guinea-pig myenteric neurons secondary to the release of endogenous serotonin by tryptamine

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Drastic changes in fecal and mucosa-associated microbiota in adult patients with short bowel syndrome

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Specific Microbiota Direct the Differentiation of IL-17-Producing T-Helper Cells in the Mucosa of the Small Intestine

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Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota

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Small Intestine Microbiota Regulate Host Digestive and Absorptive Adaptive Responses to Dietary Lipids

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Anatomy and Physiology of the Small Bowel

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Small Intestinal Bacterial Overgrowth

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Small intestinal bacterial overgrowth and warfarin dose requirement variability

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Genomic variation landscape of the human gut microbiome

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Diet rapidly and reproducibly alters the human gut microbiome

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Microbiome remodelling leads to inhibition of intestinal farnesoid X receptor signalling and decreased obesity

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Diet and specific microbial exposure trigger features of environmental enteropathy in a novel murine model

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FXR-Dependent Modulation of the Human Small Intestinal Microbiome by the Bile Acid Derivative Obeticholic Acid

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Experience of 49 Longitudinal Intestinal Lengthening Procedures for Short Bowel Syndrome

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Human gut microbiome adopts an alternative state following small bowel transplantation

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Germ-free C57BL/6J mice are resistant to high-fat-diet-induced insulin resistance and have altered cholesterol metabolism

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Ashkenazi Jews, Sulfur Gases, and Ulcerative Colitis

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Life After Surgery: Surgeon Assessments of Quality of Life Among Patients With Familial Adenomatous Polyposis

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Environmental Enteric Dysfunction in Children

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Age and Sex Normalization of Intestinal Permeability Measures for the Improved Assessment of Enteropathy in Infancy and Early Childhood

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Starved Guts

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Intestinal Microbial and Metabolic Alterations Following Successful Fecal Microbiota Transplant for D‐Lactic Acidosis

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Abnormal Gut Integrity Is Associated With Reduced Linear Growth in Rural Malawian Children

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The Bacteriology of Pouchitis

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Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism

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Diversity of human small intestinal Streptococcus and Veillonella populations

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Hydrogen sulphide as a signalling molecule regulating physiopathological processes in gastrointestinal motility

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The effects of methane and hydrogen gases produced by enteric bacteria on ileal motility and colonic transit time

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High temporal and inter‐individual variation detected in the human ileal microbiota

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Re: Levine et al. Fecal Hydrogen Sulfide Production in Ulcerative Colitis

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Fecal Hydrogen Sulfide Production in Ulcerative Colitis

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Bacterial Populations Contaminating The Upper Gut in Patients With Small Intestinal Bacterial Overgrowth Syndrome

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Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice

inferredcites →https://doi.org/10.1128/aem.01143-07openalex-snapshot

Mucosa-Associated Bacterial Diversity in Relation to Human Terminal Ileum and Colonic Biopsy Samples

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Small Intestine Bacterial Overgrowth and Environmental Enteropathy in Bangladeshi Children

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Jejunal bacterial overgrowth and intestinal permeability in children with immunodeficiency syndromes.

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Mucosal characteristics of pelvic ileal pouches.

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Effects of the faecal stream and stasis on the ileal pouch mucosa.

inferredcites →https://doi.org/10.1136/gut.42.3.396openalex-snapshot

Gut barrier function in malnourished patients

inferredcites →https://doi.org/10.1136/gut.46.1.64openalex-snapshot

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Chenodeoxycholic acid stimulates Cl − secretion via cAMP signaling and increases cystic fibrosis transmembrane conductance regulator phosphorylation in T84 cells

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Intestinal dysbiosis in children with short bowel syndrome is associated with impaired outcome

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Biomarkers of Environmental Enteropathy, Inflammation, Stunting, and Impaired Growth in Children in Northeast Brazil

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Differences of microbiota in small bowel and faeces between irritable bowel syndrome patients and healthy subjects

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Microbiota Is Involved in Post-resection Adaptation in Humans with Short Bowel Syndrome

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Extensive Intestinal Resection Triggers Behavioral Adaptation, Intestinal Remodeling and Microbiota Transition in Short Bowel Syndrome

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Biomarkers of Systemic Inflammation and Growth in Early Infancy are Associated with Stunting in Young Tanzanian Children

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Lower Bifidobacteria counts in both duodenal mucosa-associated and fecal microbiota in irritable bowel syndrome patients

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Methane production and small intestinal bacterial overgrowth in children living in a slum

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Zinc deficiency alters host response and pathogen virulence in a mouse model of enteroaggregativeescherichia coli-induced diarrhea

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Environmental Enteric Dysfunction: A Case Definition for Intervention Trials

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Human gut Bacteroides capture vitamin B12 via cell surface-exposed lipoproteins

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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The Digestion Profiles of Lipids with Different Unsaturated Levels Under the Treatment of Different Intestinal Microbiota

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Impact of the Microbiome on Oral Biopharmaceutics

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GUT MICROBIAL ECOLOGY

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The Human Microbiome

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Immunity‐on‐a‐Chip: Integration of Immune Components into the Scheme of Organ‐on‐a‐Chip Systems

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The Gut Microbiome in Hyperuricemia and Gout

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Excision of mesenteric lymph nodes alters gut microbiota and impairs social dominance in adult mice

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Characteristics of Microbiota in Different Segments of the Digestive Tract of Orange‐Collared Keelback ( Rhabdophis himalayanus )

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Dysbiosis of intestinal microbiota and metabolism caused by acute patulin exposure in mice

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Whole microbiota transplantation restores gut homeostasis throughout the gastrointestinal tract

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Ultrastructural characterization of the intestine of the Eurasian common moorhen using scanning electron microscopy and light microscopy

inferred← citeshttps://doi.org/10.1002/jpen.2624openalex-snapshot

Microbiome changes under enteral deprivation are dynamic and dependent on intestinal location

inferred← citeshttps://doi.org/10.1002/jpn3.70023openalex-snapshot

Effects of lipid‐based nutrient supplements on gut markers in stunted children: Secondary analysis of a randomised trial

inferred← citeshttps://doi.org/10.1002/mbo3.1434openalex-snapshot

The effects of stress on gut virome: Implications on infectious disease and systemic disorders

inferred← citeshttps://doi.org/10.1002/mnfr.202300036openalex-snapshot

Spontaneous and Microbiota‐Driven Degradation of Anthocyanins in an In Vitro Human Colon Model

inferred← citeshttps://doi.org/10.1002/mnfr.202300535openalex-snapshot

Novel Lauric Acid‐Butyric Structural Lipid Inhibits Inflammation: Small Intestinal Microbes May Be Important Mediators

inferred← citeshttps://doi.org/10.1002/smll.202501431openalex-snapshot

Forging a New Frontier: Antimicrobial Peptides and Nanotechnology Converging to Conquer Gastrointestinal Pathogens

inferred← citeshttps://doi.org/10.1002/term.3351openalex-snapshot

In‐depth analysis of the relationship between bovine intestinal organoids and enteroids based on morphology and transcriptome

inferred← citeshttps://doi.org/10.1007/5584_2024_803openalex-snapshot

The Potential Role of Intestinal Stem Cells and Microbiota for the Treatment of Colorectal Cancer

inferred← citeshttps://doi.org/10.1007/978-3-030-51709-0_8openalex-snapshot

The Microbiota-Gut-Liver Axis: Implications for the Pathophysiology of Liver Disease

inferred← citeshttps://doi.org/10.1007/978-3-030-65317-0_2openalex-snapshot

Composition of Microbiomes

inferred← citeshttps://doi.org/10.1007/978-3-030-80068-0_42openalex-snapshot

Small Intestinal Bacterial Overgrowth

inferred← citeshttps://doi.org/10.1007/978-981-19-4530-4_14openalex-snapshot

Gut Microbiome, COVID-19, and Neurological Impairment

inferred← citeshttps://doi.org/10.1007/978-981-96-0519-4_10openalex-snapshot

Molecular Mechanism for Utilizing Macroalgal Polysaccharides by the Human Gut Commensal Bacteria

inferred← citeshttps://doi.org/10.1007/978-981-97-4402-2_4openalex-snapshot

Probiotics and Fecal Microbiota Transplantation in Major Depression: Doxa or Episteme?

inferred← citeshttps://doi.org/10.1007/978-981-99-1463-0_7openalex-snapshot

Human Microbiome and the Susceptibility to Infections

inferred← citeshttps://doi.org/10.1007/s00248-022-02034-4openalex-snapshot

Gut Site and Gut Morphology Predict Microbiome Structure and Function in Ecologically Diverse Lemurs

inferred← citeshttps://doi.org/10.1007/s00253-020-10922-3openalex-snapshot

Thanatomicrobiome and epinecrotic community signatures for estimation of post-mortem time interval in human cadaver

inferred← citeshttps://doi.org/10.1007/s00253-021-11650-yopenalex-snapshot

Comparison of bacterial community profiles from large intestine specimens, rectal swabs, and stool samples

inferred← citeshttps://doi.org/10.1007/s10068-021-00913-zopenalex-snapshot

Prophylactic effects of probiotics on respiratory viruses including COVID-19: a review

inferred← citeshttps://doi.org/10.1007/s10620-021-07161-5openalex-snapshot

Experimental Intestinal Stenosis Alters Crohn’s Disease-Like Intestinal Inflammation in Ileitis-Prone Mice

inferred← citeshttps://doi.org/10.1007/s10620-022-07812-1openalex-snapshot

Cystic Fibrosis-Related Gut Dysbiosis: A Systematic Review

inferred← citeshttps://doi.org/10.1007/s10620-023-08067-0openalex-snapshot

Importance of Diversity: Inclusion of Duodenal Sampling Enhances the Study of Microbial Composition During the COVID-19 Pandemic

inferred← citeshttps://doi.org/10.1007/s11011-024-01369-wopenalex-snapshot

The connection between gut microbiota and its metabolites with neurodegenerative diseases in humans

inferred← citeshttps://doi.org/10.1007/s11130-026-01541-wopenalex-snapshot

Modulating the Quality of Chinese Quince Slices via Vacuum Frying: Focus on Sensory Attributes, gut Microbiota After In Vitro Fermentation, and SCFA Production

inferred← citeshttps://doi.org/10.1007/s11894-026-01057-yopenalex-snapshot

Do Multi-Omics Approaches Improve the Diagnosis of Microbial Overgrowth Syndromes?

inferred← citeshttps://doi.org/10.1007/s12672-025-02352-2openalex-snapshot

Unveiling the microbial orchestra: exploring the role of microbiota in cancer development and treatment

inferred← citeshttps://doi.org/10.1007/s13205-020-02351-wopenalex-snapshot

Dysbiosis in intestinal microbiome linked to fecal blood determined by direct hybridization

inferred← citeshttps://doi.org/10.1016/b978-0-12-818124-9.00001-2openalex-snapshot

Breakdown and clearance of steroids

inferred← citeshttps://doi.org/10.1016/b978-0-12-819265-8.00036-xopenalex-snapshot

Gut Microbiota and A Gluten-Free Diet

inferred← citeshttps://doi.org/10.1016/b978-0-12-819265-8.00039-5openalex-snapshot

The Human Gut Microbiota in all its States: From Disturbance to Resilience

inferred← citeshttps://doi.org/10.1016/b978-0-12-819265-8.00045-0openalex-snapshot

Gut Microbiota in Health and Diseases

inferred← citeshttps://doi.org/10.1016/b978-0-12-819265-8.00084-xopenalex-snapshot

Interactions of Food With the Microbiota of the Digestive Tract

inferred← citeshttps://doi.org/10.1016/b978-0-12-821649-1.00005-2openalex-snapshot

Inulin-based hydrogel

inferred← citeshttps://doi.org/10.1016/b978-0-12-822963-7.00092-xopenalex-snapshot

Gastrointestinal assessment

inferred← citeshttps://doi.org/10.1016/b978-0-323-75608-2.00187-7openalex-snapshot

Anaerobic Bacteria

inferred← citeshttps://doi.org/10.1016/b978-0-323-82763-8.00005-4openalex-snapshot

The Human Microbiome

inferred← citeshttps://doi.org/10.1016/b978-0-443-13774-7.00001-3openalex-snapshot

Gastrointestinal tract environment and its implications on oral drug delivery

inferred← citeshttps://doi.org/10.1016/b978-0-443-40551-8.00006-8openalex-snapshot

Understanding the human microbiome

inferred← citeshttps://doi.org/10.1016/j.anaerobe.2021.102319openalex-snapshot

Does over a century of aerobic phage work provide a solid framework for the study of phages in the gut?

inferred← citeshttps://doi.org/10.1016/j.apsb.2022.08.010openalex-snapshot

Recent progress in application of nanovaccines for enhancing mucosal immune responses

inferred← citeshttps://doi.org/10.1016/j.bej.2021.108199openalex-snapshot

Methodological advances and challenges in probiotic bacteria production: Ongoing strategies and future perspectives

inferred← citeshttps://doi.org/10.1016/j.biochi.2020.09.007openalex-snapshot

Jejunum: The understudied meeting place of dietary lipids and the microbiota

inferred← citeshttps://doi.org/10.1016/j.biopsych.2023.08.020openalex-snapshot

Mood Disorders: The Gut Bacteriome and Beyond

inferred← citeshttps://doi.org/10.1016/j.carbpol.2020.117418openalex-snapshot

Prevention of loperamide induced constipation in mice by KGM and the mechanisms of different gastrointestinal tract microbiota regulation

inferred← citeshttps://doi.org/10.1016/j.cdnut.2025.104564openalex-snapshot

How to Study the Effects of Dietary Lipids on the Small Intestinal Microbiome? Methodological Design and Evaluation of the Human HealThy fAt, haPpy mIcRobiome (TAPIR) Proof-of-Concept Study

inferred← citeshttps://doi.org/10.1016/j.cdnut.2026.109103openalex-snapshot

Multiomics Approach to Regionally Profile Zinc-Driven Host-Gut Microbiome Interactions in the Intestinal Tract

inferred← citeshttps://doi.org/10.1016/j.cgh.2023.06.001openalex-snapshot

Defining Small Intestinal Bacterial Overgrowth by Culture and High Throughput Sequencing

inferred← citeshttps://doi.org/10.1016/j.chemosphere.2021.129607openalex-snapshot

Intestinal changes associated with fluoride exposure in rats: Integrative morphological, proteomic and microbiome analyses

inferred← citeshttps://doi.org/10.1016/j.chom.2020.11.011openalex-snapshot

Enteroendocrine cells sense bacterial tryptophan catabolites to activate enteric and vagal neuronal pathways

inferred← citeshttps://doi.org/10.1016/j.chom.2020.12.004openalex-snapshot

A microbial metabolite remodels the gut-liver axis following bariatric surgery

inferred← citeshttps://doi.org/10.1016/j.chom.2022.07.015openalex-snapshot

Faecalibaculum rodentium remodels retinoic acid signaling to govern eosinophil-dependent intestinal epithelial homeostasis

inferred← citeshttps://doi.org/10.1016/j.clnesp.2026.102989openalex-snapshot

Investigation of the stool microbiome of short bowel syndrome patients before and after a 24-week treatment with the glucagon-like peptide 2 analog glepaglutide

inferred← citeshttps://doi.org/10.1016/j.clnu.2024.04.018openalex-snapshot

The gut microbiota in adults with chronic intestinal failure

inferred← citeshttps://doi.org/10.1016/j.cmet.2022.09.024openalex-snapshot

The gut peptide Reg3g links the small intestine microbiome to the regulation of energy balance, glucose levels, and gut function

inferred← citeshttps://doi.org/10.1016/j.cmi.2020.08.021openalex-snapshot

The cultivable microbiota of the human distal ileum

inferred← citeshttps://doi.org/10.1016/j.coemr.2021.04.005openalex-snapshot

Recent progress in analyzing the spatial structure of the human microbiome: Distinguishing biogeography and architecture in the oral and gut communities

inferred← citeshttps://doi.org/10.1016/j.csbj.2025.02.004openalex-snapshot

Comparative analysis of amino acid auxotrophies and peptidase profiles in non-dysbiotic and dysbiotic small intestinal microbiomes

inferred← citeshttps://doi.org/10.1016/j.device.2025.100904openalex-snapshot

Passive intestinal microbiome sampling using an ingestible device with tortuous lattices

inferred← citeshttps://doi.org/10.1016/j.fbio.2023.102931openalex-snapshot

Effects of butyrylated lotus seed starch on small intestinal bacteria and short-chain fatty acid production in mice

inferred← citeshttps://doi.org/10.1016/j.fbio.2024.104158openalex-snapshot

The digestion profiles of lipids with different unsaturated levels under the treatment of different intestinal bacteria

inferred← citeshttps://doi.org/10.1016/j.fbio.2025.107686openalex-snapshot

Structural characterization of Moringa oleifera root polysaccharides and their protective effects on small intestinal inflammation in mice

inferred← citeshttps://doi.org/10.1016/j.gastre.2024.502190openalex-snapshot

Small Intestinal Bacterial Overgrowth (SIBO), a clinically overdiagnosed entity?

inferred← citeshttps://doi.org/10.1016/j.gastre.2024.502216openalex-snapshot

Common questions and rationale answers about the intestinal bacterial overgrowth syndrome (SIBO)

inferred← citeshttps://doi.org/10.1016/j.gastrohep.2024.502190openalex-snapshot

Sobrecrecimiento bacteriano del intestino delgado (SIBO), ¿una entidad clínica sobrediagnosticada?

inferred← citeshttps://doi.org/10.1016/j.gastrohep.2024.502216openalex-snapshot

Preguntas comunes y respuestas razonadas sobre el síndrome del sobrecrecimiento bacteriano intestinal (SIBO)

inferred← citeshttps://doi.org/10.1016/j.gene.2022.146266openalex-snapshot

Distinct effects of TU-100 (daikenchuto) on long-lasting dysbiosis in the small intestine in patients with colorectal cancer and inflammatory bowel disease

inferred← citeshttps://doi.org/10.1016/j.gtc.2024.12.007openalex-snapshot

Optimal Approaches to Treating and Preventing Acute and Chronic Pouchitis by Altering Microbial Profiles

inferred← citeshttps://doi.org/10.1016/j.heliyon.2023.e22116openalex-snapshot

Alterations of ileal mucosa-associated microbiota in hypercholesterolemia patients

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2024.133046openalex-snapshot

Extraction of chitin-glucan complex from shiitake (Lentinula edodes) fruiting bodies using natural deep eutectic solvents and its prebiotic potential

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2026.153043openalex-snapshot

Hyaluronan exerts unique microbiome and metabolic effects compared with pectin: a multi-omics study of dietary polysaccharides

inferred← citeshttps://doi.org/10.1016/j.ijrobp.2025.11.011openalex-snapshot

A Novel Focal Duodenal Radiation Injury Model Reveals Dose-, Time-, and Spatially Dependent Microbiome Perturbations After Radiation Injury

inferred← citeshttps://doi.org/10.1016/j.isci.2025.112243openalex-snapshot

Neonatal gut microbiota succession in mice mapped over time, site, injury and single immunoglobulin interleukin-1 related receptor genotype

inferred← citeshttps://doi.org/10.1016/j.isci.2026.116679openalex-snapshot

Duodenal microbiome profiles exhibit sex-specific differences

inferred← citeshttps://doi.org/10.1016/j.jcf.2021.11.014openalex-snapshot

Intestinal function and transit associate with gut microbiota dysbiosis in cystic fibrosis

inferred← citeshttps://doi.org/10.1016/j.jep.2026.121182openalex-snapshot

Alleviation of adverse effects associated with α-glucosidase inhibitors by Ocimum basilicum L., Matricaria chamomilla L., and Salvia officinalis L. reveals novel selective inhibition of Bacillus α-glucosidase by acarbose

inferred← citeshttps://doi.org/10.1016/j.jff.2022.105089openalex-snapshot

Long-term daily high-protein, drained yoghurt consumption alters abundance of selected functional groups of the human gut microbiota and fecal short-chain fatty acid profiles in a cohort of overweight and obese women

inferred← citeshttps://doi.org/10.1016/j.jnutbio.2021.108594openalex-snapshot

Metagenomic insights into the effects of Urtica dioica vegetable on the gut microbiota of C57BL/6J obese mice, particularly the composition of Clostridia

inferred← citeshttps://doi.org/10.1016/j.jss.2026.03.057openalex-snapshot

Development of a Gut Model for Analyzing Impact of Surgical Intervention in Short Bowel Syndrome

inferred← citeshttps://doi.org/10.1016/j.lanmic.2026.101389openalex-snapshot

Spatially resolved architecture of the human gut microbiome and its health implications

inferred← citeshttps://doi.org/10.1016/j.mce.2025.112599openalex-snapshot

From Gut to Brain: The roles of intestinal microbiota, immune system, and hormones in intestinal physiology and gut–brain–axis

inferred← citeshttps://doi.org/10.1016/j.mehy.2023.111115openalex-snapshot

The microbiome-inflammasome hypothesis explains the rarity of small bowel tumors

inferred← citeshttps://doi.org/10.1016/j.micres.2023.127470openalex-snapshot

The role of type II esophageal microbiota in achalasia: Activation of macrophages and degeneration of myenteric neurons

inferred← citeshttps://doi.org/10.1016/j.nbd.2025.107032openalex-snapshot

Double-edged sword effect of Sutterella in neurological disorders: implications for the gut-brain axis and neuroimmune interactions

inferred← citeshttps://doi.org/10.1016/j.parkreldis.2020.05.001openalex-snapshot

Clinical implications of gastric complications on levodopa treatment in Parkinson's disease

inferred← citeshttps://doi.org/10.1016/j.rvsc.2025.105805openalex-snapshot

Ultrastructure of the intestinal canal in healthy turkeys (Meleagris gallopavo) using light and scanning electron microscopy

inferred← citeshttps://doi.org/10.1016/j.semcancer.2021.09.016openalex-snapshot

Impact of the ileal microbiota on colon cancer

inferred← citeshttps://doi.org/10.1016/j.smhs.2025.04.003openalex-snapshot

Probiotics, gut microbiota and physical activity: A close relationship

inferred← citeshttps://doi.org/10.1016/j.tcsw.2022.100084openalex-snapshot

Impact of changes at the Candida albicans cell surface upon immunogenicity and colonisation in the gastrointestinal tract

inferred← citeshttps://doi.org/10.1016/j.tips.2022.08.002openalex-snapshot

Commensal gut microbiota-based strategies for oral delivery of therapeutic proteins

inferred← citeshttps://doi.org/10.1016/j.vetimm.2026.111065openalex-snapshot

Microbial ecology, functional implications, and associated factors influencing poultry intestinal health

inferred← citeshttps://doi.org/10.1016/j.xcrm.2023.101190openalex-snapshot

Small intestine vs. colon ecology and physiology: Why it matters in probiotic administration

inferred← citeshttps://doi.org/10.1016/j.ymben.2023.06.006openalex-snapshot

Metabolic engineering of human gut microbiome: Recent developments and future perspectives

inferred← citeshttps://doi.org/10.1016/s1634-6939(20)80353-6openalex-snapshot

10.1016/s1634-6939(20)80353-6

inferred← citeshttps://doi.org/10.1016/s1634-7358(21)45515-4openalex-snapshot

Colonizzazione batterica cronica dell’intestino tenue

inferred← citeshttps://doi.org/10.1017/gmb.2020.4openalex-snapshot

Lumen and mucosa-associatedLactobacillus rhamnosusfrom the intestinal tract of organ donors

inferred← citeshttps://doi.org/10.1021/acs.jafc.2c08146openalex-snapshot

Effect of Operational Parameters on the Cultivation of the Gut Microbiome in Continuous Bioreactors Inoculated with Feces: A Systematic Review

inferred← citeshttps://doi.org/10.1021/acs.jcim.1c00948openalex-snapshot

Consensus Prediction of Human Gut Microbiota-Mediated Metabolism Susceptibility for Small Molecules by Machine Learning, Structural Alerts, and Dietary Compounds-Based Average Similarity Methods

inferred← citeshttps://doi.org/10.1038/s41467-023-40214-zopenalex-snapshot

The Gram-positive bacterium Romboutsia ilealis harbors a polysaccharide synthase that can produce (1,3;1,4)-β-d-glucans

inferred← citeshttps://doi.org/10.1038/s41522-026-01087-4openalex-snapshot

Phage endolysin enables targeted manipulation of the small intestinal microbiota and uncovers niche overlap between oral and butyrate-producing taxa

inferred← citeshttps://doi.org/10.1038/s41563-024-01909-wopenalex-snapshot

Inulin-gel-based oral immunotherapy remodels the small intestinal microbiome and suppresses food allergy

inferred← citeshttps://doi.org/10.1038/s41575-021-00441-5openalex-snapshot

Recipient factors in faecal microbiota transplantation: one stool does not fit all

inferred← citeshttps://doi.org/10.1038/s41579-026-01333-8openalex-snapshot

Fermented food microbiome: influence on oral and gut microbiota, and human health

inferred← citeshttps://doi.org/10.1038/s41586-023-05989-7openalex-snapshot

Profiling the human intestinal environment under physiological conditions

inferred← citeshttps://doi.org/10.1038/s41591-025-03719-2openalex-snapshot

Individual variations in glycemic responses to carbohydrates and underlying metabolic physiology

inferred← citeshttps://doi.org/10.1038/s41598-020-80714-2openalex-snapshot

Avian intestinal ultrastructure changes provide insight into the pathogenesis of enteric diseases and probiotic mode of action

inferred← citeshttps://doi.org/10.1038/s41598-021-02431-8openalex-snapshot

E. coli Nissle 1917 modulates host glucose metabolism without directly acting on glucose

inferred← citeshttps://doi.org/10.1038/s41598-021-85527-5openalex-snapshot

Bacterial metabolites trimethylamine N-oxide and butyrate as surrogates of small intestinal bacterial overgrowth in patients with a recent decompensated heart failure

inferred← citeshttps://doi.org/10.1038/s41598-021-86980-yopenalex-snapshot

A toolbox for the comprehensive analysis of small volume human intestinal samples that can be used with gastrointestinal sampling capsules

inferred← citeshttps://doi.org/10.1038/s41598-022-10450-2openalex-snapshot

Microbial changes in stool, saliva, serum, and urine before and after anti-TNF-α therapy in patients with inflammatory bowel diseases

inferred← citeshttps://doi.org/10.1038/s41598-024-72887-xopenalex-snapshot

Effect of Lacticaseibacillus rhamnosus IDCC 3201 on irritable bowel syndrome with constipation: a randomized, double-blind, and placebo-controlled trial

inferred← citeshttps://doi.org/10.1038/s41598-025-07932-4openalex-snapshot

Exposure to ileal feces with frailty-associated dysbiosis elevates gastrointestinal complication risk after intracorporeal urinary diversion

inferred← citeshttps://doi.org/10.1038/s41598-026-46184-8openalex-snapshot

Patient-derived intestinal organoids as a model for site-specific mucosal bacterial interactions in paediatric inflammatory bowel disease

inferred← citeshttps://doi.org/10.1038/s42255-023-00796-wopenalex-snapshot

Inactivation of the antidiabetic drug acarbose by human intestinal microbial-mediated degradation

inferred← citeshttps://doi.org/10.1038/s42255-023-00802-1openalex-snapshot

Metabolic landscape of the male mouse gut identifies different niches determined by microbial activities

inferred← citeshttps://doi.org/10.1038/s42255-026-01579-9openalex-snapshot

Short-chain fatty acids

inferred← citeshttps://doi.org/10.1038/s44220-023-00148-3openalex-snapshot

Bugs as features (part 1): concepts and foundations for the compositional data analysis of the microbiome–gut–brain axis

inferred← citeshttps://doi.org/10.1039/bk9781839162428-00106openalex-snapshot

Small Intestine, Digestion, and Nutrient Absorption

inferred← citeshttps://doi.org/10.1039/bk9781839162428-00172openalex-snapshot

Large Intestine and Gut–Brain–Microbiota Interactions

inferred← citeshttps://doi.org/10.1042/bcj20200902openalex-snapshot

Altered intestinal epithelial nutrient transport: an underappreciated factor in obesity modulated by diet and microbiota

inferred← citeshttps://doi.org/10.1053/j.gastro.2022.12.011openalex-snapshot

Revisiting the Stool Microbiome: Intestinal Paracellular Permeability Connection

inferred← citeshttps://doi.org/10.1055/a-1866-3886openalex-snapshot

Duodenoscope contamination and decontamination: more questions than answers

inferred← citeshttps://doi.org/10.1071/an20701openalex-snapshot

Probiotics and gut health: linking gut homeostasis and poultry productivity

inferred← citeshttps://doi.org/10.1073/pnas.2415845122openalex-snapshot

Intravital imaging of translocated bacteria via fluorogenic labeling of gut microbiota in situ

inferred← citeshttps://doi.org/10.1080/10408398.2020.1845605openalex-snapshot

Macroalgal dietary glycans: potential source for human gut bacteria and enhancing immune system for better health

inferred← citeshttps://doi.org/10.1080/10408398.2022.2119204openalex-snapshot

Mechanisms of carotenoid intestinal absorption and the regulation of dietary lipids: lipid transporter-mediated transintestinal epithelial pathways

inferred← citeshttps://doi.org/10.1080/10408398.2023.2199861openalex-snapshot

Oral bioavailability of bioactive compounds; modulating factors, in vitro analysis methods, and enhancing strategies

inferred← citeshttps://doi.org/10.1080/10408398.2024.2434961openalex-snapshot

Site-specific impact of polyphenols on the gastrointestinal microbiome

inferred← citeshttps://doi.org/10.1080/1040841x.2024.2438119openalex-snapshot

Bifidobacterial biofilms as next-generation probiotics and their role in intestinal microbiocenosis

inferred← citeshttps://doi.org/10.1080/17425247.2023.2270915openalex-snapshot

Biocompatible smart micro/nanorobots for active gastrointestinal tract drug delivery

inferred← citeshttps://doi.org/10.1080/19490976.2021.2018899openalex-snapshot

Probiotic improves symptomatic and viral clearance in Covid19 outpatients: a randomized, quadruple-blinded, placebo-controlled trial

inferred← citeshttps://doi.org/10.1080/19490976.2023.2197833openalex-snapshot

Intestinal mucin-type O -glycans: the major players in the host-bacteria-rotavirus interactions

inferred← citeshttps://doi.org/10.1080/19490976.2023.2199659openalex-snapshot

Delay in loop ileostomy reversal surgery does not impact upon post-operative clinical outcomes. Complications are associated with an increased loss of microflora in the defunctioned intestine

inferred← citeshttps://doi.org/10.1080/19490976.2023.2201155openalex-snapshot

The emerging role of the small intestinal microbiota in human health and disease

inferred← citeshttps://doi.org/10.1080/19490976.2023.2232506openalex-snapshot

Dynamic effects of probiotic formula ecologic®825 on human small intestinal ileostoma microbiota: a network theory approach

inferred← citeshttps://doi.org/10.1080/19490976.2024.2370634openalex-snapshot

Restricted intake of sulfur-containing amino acids reversed the hepatic injury induced by excess Desulfovibrio through gut–liver axis

inferred← citeshttps://doi.org/10.1080/19490976.2025.2514144openalex-snapshot

Bacteria enable tolerance to bile salt exposure in an immune-competent human intestinal model

inferred← citeshttps://doi.org/10.1080/19490976.2025.2579353openalex-snapshot

Small intestine is not colon: a new in vitro model of the human ileum microbiome integrating the mucosal microenvironment and feeding status

inferred← citeshttps://doi.org/10.1080/19490976.2026.2657053openalex-snapshot

The duodenal microbiota is compartmentalized and clinically stable yet rapidly responsive to nutrient exposure

inferred← citeshttps://doi.org/10.1080/19490976.2026.2675764openalex-snapshot

Minimally invasive capsule-string device enables spatially resolved microbiome profiling across the upper gastrointestinal tract

inferred← citeshttps://doi.org/10.1089/jmf.2023.k.0320openalex-snapshot

Supplementation with a Probiotic Formula Having β-Glucuronidase Activity Modulates Serum Estrogen Levels in Healthy Peri- and Postmenopausal Women

inferred← citeshttps://doi.org/10.1093/ajcn/nqab149openalex-snapshot

Using naso- and oro-intestinal catheters in physiological research for intestinal delivery and sampling in vivo: practical and technical aspects to be considered.

inferred← citeshttps://doi.org/10.1093/bjsopen/zrag046openalex-snapshot

Perioperative faecal microbiome dynamics in patients undergoing rectal cancer surgery in the IMARI-trial

inferred← citeshttps://doi.org/10.1093/cvr/cvae061openalex-snapshot

Lactiplantibacillus plantarum strains KABP011, KABP012, and KABP013 modulate bile acids and cholesterol metabolism in humans

inferred← citeshttps://doi.org/10.1093/ecco-jcc/jjab020openalex-snapshot

The Composition and Metabolic Potential of the Human Small Intestinal Microbiota Within the Context of Inflammatory Bowel Disease

inferred← citeshttps://doi.org/10.1093/femsec/fiae075openalex-snapshot

The strength of gut microbiota transfer along social networks and genealogical lineages in the house mouse

inferred← citeshttps://doi.org/10.1093/femsre/fuae008openalex-snapshot

Life at the borderlands: microbiomes of interfaces critical to One Health

inferred← citeshttps://doi.org/10.1093/jas/skab255openalex-snapshot

Effects of Bacillus subtilis on jejunal integrity, redox status, and microbial composition of intrauterine growth restriction suckling piglets

inferred← citeshttps://doi.org/10.1093/jn/nxab113openalex-snapshot

Luminal Bioavailability of Orally Administered ω-3 PUFAs in the Distal Small Intestine, and Associated Changes to the Ileal Microbiome, in Humans with a Temporary Ileostomy

inferred← citeshttps://doi.org/10.1093/lifemeta/load032openalex-snapshot

Gut microbiota, immunity, and bile acid metabolism: decoding metabolic disease interactions

inferred← citeshttps://doi.org/10.1093/procel/pwae058openalex-snapshot

Investigating regional-specific gut microbial distribution: an uncharted territory in disease therapeutics

inferred← citeshttps://doi.org/10.1097/hep.0000000000000506openalex-snapshot

Role of microbiome in autoimmune liver diseases

inferred← citeshttps://doi.org/10.1097/mco.0000000000000780openalex-snapshot

Intestinal dysfunction in chronic disease

inferred← citeshttps://doi.org/10.1097/md.0000000000039866openalex-snapshot

Gut microbiota and eye diseases: A review

inferred← citeshttps://doi.org/10.1097/mog.0000000000001135openalex-snapshot

Modern concepts of small intestinal bacterial overgrowth

inferred← citeshttps://doi.org/10.1099/mic.0.001568openalex-snapshot

Pharmaco-psychiatry and gut microbiome: a systematic review of effects of psychotropic drugs for bipolar disorder

inferred← citeshttps://doi.org/10.1101/2020.12.24.424341openalex-snapshot

Metaproteomic Profiling of Fungal Gut Colonization in Gnotobiotic Mice

inferred← citeshttps://doi.org/10.1101/2022.01.19.476920openalex-snapshot

Profiling of the human intestinal microbiome and bile acids under physiologic conditions using an ingestible sampling device

inferred← citeshttps://doi.org/10.1101/2023.01.29.525861openalex-snapshot

Probiotics supplementation to adult human small intestinal stoma microbiota causes dynamic increase in the community resistance to perturbations and nutrient utilization

inferred← citeshttps://doi.org/10.1101/2024.04.04.24305299openalex-snapshot

CLINICAL SAMPLING OF SMALL INTESTINE LUMINAL CONTENT FOR MICROBIOME MULTI-OMICS ANALYSIS: A PERFORMANCE ANALYSIS OF THE SMALL INTESTINE MICROBIOME ASPIRATION (SIMBA) CAPSULE AND BENCHMARKING AGAINST ENDOSCOPY

inferred← citeshttps://doi.org/10.1101/2024.04.24.590999openalex-snapshot

Improved mouse models of the small intestine microbiota using region-specific sampling from humans

inferred← citeshttps://doi.org/10.1101/2025.05.08.652836openalex-snapshot

Influence of Housing, Sex, and Sampling Location on Taxonomy and Function of Adult Zebrafish Microbiomes

inferred← citeshttps://doi.org/10.1101/2025.05.09.653168openalex-snapshot

Host microbiome determines host specificity of the human whipworm, Trichuris trichiura

inferred← citeshttps://doi.org/10.1101/2025.11.25.690363openalex-snapshot

Brush border intermicrovillar adhesion limits bacteria attachment to the small intestine brush border

inferred← citeshttps://doi.org/10.1111/febs.17293openalex-snapshot

Glycaemic sugar metabolism and the gut microbiota: past, present and future

inferred← citeshttps://doi.org/10.1111/hel.12753openalex-snapshot

Duodenal microbiome in patients with or without Helicobacter pylori infection

inferred← citeshttps://doi.org/10.1111/joim.20089openalex-snapshot

Gut microbiota development across the lifespan: Disease links and health‐promoting interventions

inferred← citeshttps://doi.org/10.1111/mmi.15270openalex-snapshot

A long journey to the colon: The role of the small intestine microbiota in intestinal disease

inferred← citeshttps://doi.org/10.1111/nmo.14372openalex-snapshot

Role of the duodenal microbiota in functional dyspepsia

inferred← citeshttps://doi.org/10.1111/nmo.14817openalex-snapshot

Critical appraisal of the SIBO hypothesis and breath testing: A clinical practice update endorsed by the European society of neurogastroenterology and motility (ESNM) and the American neurogastroenterology and motility society (ANMS)

inferred← citeshttps://doi.org/10.1111/nmo.70182openalex-snapshot

Response to Maximilian and Gasche

inferred← citeshttps://doi.org/10.1113/jp287316openalex-snapshot

Fructose catabolism and its metabolic effects: Exploring host–microbiota interactions and the impact of ethnicity

inferred← citeshttps://doi.org/10.1128/ecosalplus.esp-0006-2023openalex-snapshot

Nutrition of Escherichia coli within the intestinal microbiome

inferred← citeshttps://doi.org/10.1128/jb.00172-21openalex-snapshot

Direct Cobamide Remodeling via Additional Function of Cobamide Biosynthesis Protein CobS from Vibrio cholerae

inferred← citeshttps://doi.org/10.1128/jvi.01526-23openalex-snapshot

Microbiota do not restrict rotavirus infection of colon

inferred← citeshttps://doi.org/10.1128/mbio.02890-21openalex-snapshot

Helminth-Induced Human Gastrointestinal Dysbiosis: a Systematic Review and Meta-Analysis Reveals Insights into Altered Taxon Diversity and Microbial Gradient Collapse

inferred← citeshttps://doi.org/10.1128/mmbr.00127-22openalex-snapshot

Understanding the gut microbiota by considering human evolution: a story of fire, cereals, cooking, molecular ingenuity, and functional cooperation

inferred← citeshttps://doi.org/10.1128/msystems.01764-25openalex-snapshot

Reshaping of the fecal proteome and metaproteome in obese patients 2 years after bariatric surgery

inferred← citeshttps://doi.org/10.1128/spectrum.01382-24openalex-snapshot

Gut dysbiosis narrative in psoriasis: matched-pair approach identifies only subtle shifts correlated with elevated fecal calprotectin

inferred← citeshttps://doi.org/10.1128/spectrum.04031-23openalex-snapshot

Rapid biotransformation of STW 5 constituents by human gut microbiome from IBS- and non-IBS donors

inferred← citeshttps://doi.org/10.1134/s2079086421040034openalex-snapshot

Human Intestinal Microbiome and the Immune System: The Role of Probiotics in Shaping an Immune System Unsusceptible to COVID-19 Infection

inferred← citeshttps://doi.org/10.1136/bmjnph-2024-001100openalex-snapshot

Coeliac disease and microbiota: is it time for personalised biotics intervention? A scoping review

inferred← citeshttps://doi.org/10.1152/ajpgi.00091.2021openalex-snapshot

Fecal microbiome and bile acid metabolome in adult short bowel syndrome

inferred← citeshttps://doi.org/10.1159/000524023openalex-snapshot

The Compositional Structure of the Small Intestinal Microbial Community via Balloon-Assisted Enteroscopy

inferred← citeshttps://doi.org/10.1161/circresaha.125.325516openalex-snapshot

Gut-Heart Axis: The Role of Gut Microbiota and Metabolites in Heart Failure

inferred← citeshttps://doi.org/10.1177/20417314221149882openalex-snapshot

Gut-on-a-chip for disease models

inferred← citeshttps://doi.org/10.1182/bloodadvances.2023011034openalex-snapshot

R-Spondin1 protects gastric stem cells and mitigates gastric GVHD in allogeneic hematopoietic stem cell transplantation

inferred← citeshttps://doi.org/10.1186/s12866-025-04568-2openalex-snapshot

Impact of gut microbiota on atypical endometrial hyperplasia and endometrial cancer: a comprehensive analysis of microbial composition and metabolomic profiling

inferred← citeshttps://doi.org/10.1186/s12967-024-05066-1openalex-snapshot

Multi-omics analysis of the gut microbiome and metabolites associated with the psychoneurological symptom cluster in children with cancer receiving chemotherapy

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