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Mobile Group II Introns as Ancestral Eukaryotic Elements

https://doi.org/10.1016/j.tig.2017.07.009

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The spliceosome: the most complex macromolecular machine in the cell?

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If the cap fits, wear it: an overview of telomeric structures over evolution

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Evolution of Plant Mitochondrial Intron-Encoded Maturases: Frequent Lineage-Specific Loss and Recurrent Intracellular Transfer to the Nucleus

inferredcites →https://doi.org/10.1007/s004380050497openalex-snapshot

A tripartite group II intron in mitochondria of an angiosperm plant

inferredcites →https://doi.org/10.1016/j.bbabio.2015.01.009openalex-snapshot

Organellar maturases: A window into the evolution of the spliceosome

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The Spliceosome: Design Principles of a Dynamic RNP Machine

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Visualizing Group II Intron Catalysis through the Stages of Splicing

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Housekeeping recA gene interrupted by group II intron in the thermophilic Geobacillus kaustophilus

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The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer

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Mobile self-splicing introns and inteins as environmental sensors

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Cis- and trans-splicing of group II introns in plant mitochondria

inferredcites →https://doi.org/10.1016/j.molcel.2009.03.014openalex-snapshot

Global Regulators Orchestrate Group II Intron Retromobility

inferredcites →https://doi.org/10.1016/j.sbi.2015.12.005openalex-snapshot

CryoEM structures of two spliceosomal complexes: starter and dessert at the spliceosome feast

inferredcites →https://doi.org/10.1016/j.tibs.2017.03.007openalex-snapshot

Structural Insights into the Mechanism of Group II Intron Splicing

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Origins and evolution of viruses of eukaryotes: The ultimate modularity

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Identification of a family of group II introns encoding LAGLIDADG ORFs typical of group I introns

inferredcites →https://doi.org/10.1021/bi027330bopenalex-snapshot

A Group II Intron Inserted into a Bacterial Heat-Shock Operon Shows Autocatalytic Activity and Unusual Thermostability

inferredcites →https://doi.org/10.1038/hdy.2014.32openalex-snapshot

Insights into the history of a bacterial group II intron remnant from the genomes of the nitrogen-fixing symbionts Sinorhizobium meliloti and Sinorhizobium medicae

inferredcites →https://doi.org/10.1038/nature04531openalex-snapshot

Introns and the origin of nucleus–cytosol compartmentalization

inferredcites →https://doi.org/10.1038/nature07283openalex-snapshot

Structure of the Tribolium castaneum telomerase catalytic subunit TERT

inferredcites →https://doi.org/10.1038/nature19316openalex-snapshot

Cryo-EM structure of the spliceosome immediately after branching

inferredcites →https://doi.org/10.1038/nature21079openalex-snapshot

Cryo-EM structure of a human spliceosome activated for step 2 of splicing

inferredcites →https://doi.org/10.1038/nmeth.3478openalex-snapshot

Efficient and quantitative high-throughput tRNA sequencing

inferredcites →https://doi.org/10.1038/nsmb.3220openalex-snapshot

Structure of a group II intron in complex with its reverse transcriptase

inferredcites →https://doi.org/10.1038/nsmb.3224openalex-snapshot

Crystal structures of a group II intron maturase reveal a missing link in spliceosome evolution

inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03649.xopenalex-snapshot

A group II intron has invaded the genus Azotobacter and is inserted within the termination codon of the essential groEL gene

inferredcites →https://doi.org/10.1073/pnas.0700561104openalex-snapshot

Insertion of group II intron retroelements after intrinsic transcriptional terminators

inferredcites →https://doi.org/10.1073/pnas.0702741104openalex-snapshot

Telomere-associated endonuclease-deficient Penelope -like retroelements in diverse eukaryotes

inferredcites →https://doi.org/10.1073/pnas.0909400107openalex-snapshot

An organellar maturase associates with multiple group II introns

inferredcites →https://doi.org/10.1073/pnas.1100266108openalex-snapshot

A widespread class of reverse transcriptase-related cellular genes

inferredcites →https://doi.org/10.1073/pnas.1100278108openalex-snapshot

Retrotransposons that maintain chromosome ends

inferredcites →https://doi.org/10.1073/pnas.1404276111openalex-snapshot

RNA–RNA interactions and pre-mRNA mislocalization as drivers of group II intron loss from nuclear genomes

inferredcites →https://doi.org/10.1074/jbc.m116.750570openalex-snapshot

A Ribonucleoprotein Supercomplex Involved in trans-Splicing of Organelle Group II Introns

inferredcites →https://doi.org/10.1080/15476286.2015.1066956openalex-snapshot

Group II intron lariat: Structural insights into the spliceosome

inferredcites →https://doi.org/10.1080/15476286.2016.1244595openalex-snapshot

Forks in the tracks: Group II introns, spliceosomes, telomeres and beyond

inferredcites →https://doi.org/10.1093/gbe/evw011openalex-snapshot

Group II Intron-MediatedTrans-Splicing in the Gene-Rich Mitochondrial Genome of an Enigmatic Eukaryote,Diphylleia rotans

inferredcites →https://doi.org/10.1093/gbe/evw190openalex-snapshot

Mitochondrion-to-Chloroplast DNA Transfers and Intragenomic Proliferation of Chloroplast Group II Introns inGloeotilopsisGreen Algae (Ulotrichales, Ulvophyceae)

inferredcites →https://doi.org/10.1093/jhered/esp062openalex-snapshot

Endogenous Mechanisms for the Origins of Spliceosomal Introns

inferredcites →https://doi.org/10.1093/molbev/msj047openalex-snapshot

Origin and Evolution of the Chloroplast trnK (matK) Intron: A Model for Evolution of Group II Intron RNA Structures

inferredcites →https://doi.org/10.1093/molbev/msj085openalex-snapshot

Periodic Extinctions of Transposable Elements in Bacterial Lineages: Evidence from Intragenomic Variation in Multiple Genomes

inferredcites →https://doi.org/10.1093/molbev/msn039openalex-snapshot

Extremely Intron-Rich Genes in the Alveolate Ancestors Inferred with a Flexible Maximum-Likelihood Approach

inferredcites →https://doi.org/10.1093/molbev/msp193openalex-snapshot

A Broadscale Phylogenetic Analysis of Group II Intron RNAs and Intron-Encoded Reverse Transcriptases

inferredcites →https://doi.org/10.1093/molbev/msq238openalex-snapshot

Remarkable Abundance and Evolution of Mobile Group II Introns in Wolbachia Bacterial Endosymbionts

inferredcites →https://doi.org/10.1093/nar/21.15.3537openalex-snapshot

Complete sequence ofEuglena gracilischloroplast DNA

inferredcites →https://doi.org/10.1093/nar/gkn095openalex-snapshot

Lateral transfer of introns in the cryptophyte plastid genome

inferredcites →https://doi.org/10.1093/nar/gkn867openalex-snapshot

A diversity of uncharacterized reverse transcriptases in bacteria

inferredcites →https://doi.org/10.1093/nar/gkq847openalex-snapshot

Splicing of the Sinorhizobium meliloti RmInt1 group II intron provides evidence of retroelement behavior

inferredcites →https://doi.org/10.1093/nar/gkr1043openalex-snapshot

Database for bacterial group II introns

inferredcites →https://doi.org/10.1093/nar/gkt1051openalex-snapshot

Visualizing the ai5γ group IIB intron

inferredcites →https://doi.org/10.1098/rstb.2015.0442openalex-snapshot

Viruses and mobile elements as drivers of evolutionary transitions

inferredcites →https://doi.org/10.1099/mic.0.2007/016360-0openalex-snapshot

The S.ma.I2 class C group II intron inserts at integron attC sites

inferredcites →https://doi.org/10.1101/cshperspect.a003616openalex-snapshot

Group II Introns: Mobile Ribozymes that Invade DNA

inferredcites →https://doi.org/10.1101/gad.1905010openalex-snapshot

Nuclear expression of a group II intron is consistent with spliceosomal intron ancestry

inferredcites →https://doi.org/10.1105/tpc.16.00398openalex-snapshot

The Reverse Transcriptase/RNA Maturase Protein MatR Is Required for the Splicing of Various Group II Introns in Brassicaceae Mitochondria

inferredcites →https://doi.org/10.1111/j.1574-6976.2007.00068.xopenalex-snapshot

Bacterial group II introns: not just splicing

inferredcites →https://doi.org/10.1126/science.1153803openalex-snapshot

Crystal Structure of a Self-Spliced Group II Intron

inferredcites →https://doi.org/10.1126/science.aac7629openalex-snapshot

Structure of a yeast spliceosome at 3.6-angstrom resolution

inferredcites →https://doi.org/10.1126/science.aaf9258openalex-snapshot

Crystal structures of a group II intron lariat primed for reverse splicing

inferredcites →https://doi.org/10.1128/jb.00674-09openalex-snapshot

Potential Role of Group IIC-attCIntrons in Integron Cassette Formation

inferredcites →https://doi.org/10.1128/jb.186.8.2393-2401.2004openalex-snapshot

Conserved Target for Group II Intron Insertion in Relaxase Genes of Conjugative Elements of Gram-Positive Bacteria

inferredcites →https://doi.org/10.1128/microbiolspec.mdna3-0050-2014openalex-snapshot

Mobile Bacterial Group II Introns at the Crux of Eukaryotic Evolution

inferredcites →https://doi.org/10.1128/microbiolspec.mdna3-0058-2014openalex-snapshot

An Unexplored Diversity of Reverse Transcriptases in Bacteria

inferredcites →https://doi.org/10.1128/mmbr.00056-13openalex-snapshot

Integrons: Past, Present, and Future

inferredcites →https://doi.org/10.1146/annurev.genet.42.110807.091549openalex-snapshot

The Take and Give Between Retrotransposable Elements and their Hosts

inferredcites →https://doi.org/10.1186/1759-8753-4-28openalex-snapshot

A pipeline of programs for collecting and analyzing group II intron retroelement sequences from GenBank

inferredcites →https://doi.org/10.1186/1759-8753-5-2openalex-snapshot

Biotechnological applications of mobile group II introns and their reverse transcriptases: gene targeting, RNA-seq, and non-coding RNA analysis

inferredcites →https://doi.org/10.1186/gb4145openalex-snapshot

The spliceosomal catalytic core arose in the RNA world… or did it?

inferredcites →https://doi.org/10.1186/s12862-015-0560-5openalex-snapshot

Dynamics of bacterial insertion sequences: can transposition bursts help the elements persist?

inferredcites →https://doi.org/10.1186/s12862-016-0789-7openalex-snapshot

Recent horizontal transfer, functional adaptation and dissemination of a bacterial group II intron

inferredcites →https://doi.org/10.1186/s13100-015-0037-5openalex-snapshot

Evolution of group II introns

inferredcites →https://doi.org/10.1261/rna.2126203openalex-snapshot

ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs

inferredcites →https://doi.org/10.1261/rna.2184010openalex-snapshot

A group II intron encodes a functional LAGLIDADG homing endonuclease and self-splices under moderate temperature and ionic conditions

inferredcites →https://doi.org/10.1261/rna.2396011openalex-snapshot

Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase

inferredcites →https://doi.org/10.1371/journal.pcbi.1002150openalex-snapshot

A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes

inferredcites →https://doi.org/10.1371/journal.pone.0052268openalex-snapshot

Selection-Driven Extinction Dynamics for Group II Introns in Enterobacteriales

inferredcites →https://doi.org/10.1371/journal.pone.0053433openalex-snapshot

Evidence for Transitional Stages in the Evolution of Euglenid Group II Introns and Twintrons in the Monomorphina aenigmatica Plastid Genome

inferredcites →https://doi.org/10.1371/journal.pone.0055102openalex-snapshot

Comprehensive Phylogenetic Analysis of Bacterial Group II Intron-Encoded ORFs Lacking the DNA Endonuclease Domain Reveals New Varieties

inferredcites →https://doi.org/10.1371/journal.pone.0058263openalex-snapshot

The Brown Algae Pl.LSU/2 Group II Intron-Encoded Protein Has Functional Reverse Transcriptase and Maturase Activities

inferredcites →https://doi.org/10.1371/journal.pone.0114083openalex-snapshot

Comprehensive Phylogenetic Analysis of Bacterial Reverse Transcriptases

inferredcites →https://doi.org/10.1371/journal.pone.0162275openalex-snapshot

Host Factors Influencing the Retrohoming Pathway of Group II Intron RmInt1, Which Has an Intron-Encoded Protein Naturally Devoid of Endonuclease Activity

inferredcites →https://doi.org/10.2741/klein1openalex-snapshot

Bacterial group II introns and their association with mobile genetic elements

inferredcites →https://doi.org/10.3389/fgene.2015.00321openalex-snapshot

A loopy view of telomere evolution

inferredcites →https://doi.org/10.3389/fpls.2014.00035openalex-snapshot

Group II intron splicing factors in plant mitochondria

inferredcites →https://doi.org/10.3732/ajb.89.10.1651openalex-snapshot

Group II introns as phylogenetic tools: structure, function, and evolutionary constraints

inferredcites →https://doi.org/10.4161/rna.32092openalex-snapshot

Insights into the strategies used by related group II introns to adapt successfully for the colonisation of a bacterial genome

inferredcites →https://doi.org/10.7717/peerj.2627openalex-snapshot

Proliferation of group II introns in the chloroplast genome of the green alga Oedocladium carolinianum (Chlorophyceae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.26442/18151434.2021.4.201199openalex-snapshot

Influence of retroelements on oncogenes and tumor suppressors in carcinogenesis: A review

inferred← citeshttps://doi.org/10.3389/fgene.2019.01135openalex-snapshot

A Bioinformatic Method For Identifying Group II Introns In Organella Genomes

inferred← citeshttps://doi.org/10.3389/fmars.2021.668542openalex-snapshot

Chloroplast Genomes of the Green-Tide Forming Alga Ulva compressa: Comparative Chloroplast Genomics in the Genus Ulva (Ulvophyceae, Chlorophyta)

inferred← citeshttps://doi.org/10.3389/fmicb.2018.00627openalex-snapshot

Contribution of Mobile Group II Introns to Sinorhizobium meliloti Genome Evolution

inferred← citeshttps://doi.org/10.3389/fmicb.2022.849080openalex-snapshot

Distinct Expansion of Group II Introns During Evolution of Prokaryotes and Possible Factors Involved in Its Regulation

inferred← citeshttps://doi.org/10.3389/fmolb.2022.834020openalex-snapshot

Identification of Group II Intron RmInt1 Binding Sites in a Bacterial Genome

inferred← citeshttps://doi.org/10.3389/fpls.2020.00732openalex-snapshot

Two Pentatricopeptide Repeat Proteins Are Required for the Splicing of nad5 Introns in Maize

inferred← citeshttps://doi.org/10.3390/biomedinformatics3040055openalex-snapshot

Identification of a New Drug Binding Site in the RNA-Dependent-RNA-Polymerase (RdRp) Domain

inferred← citeshttps://doi.org/10.3390/cells10082001openalex-snapshot

Organellar Introns in Fungi, Algae, and Plants

inferred← citeshttps://doi.org/10.3390/ijms27062613openalex-snapshot

Structural Remodeling and Enzymatic Replacement Shape the Evolution of Organellar Group II Introns in Ulva

inferred← citeshttps://doi.org/10.3410/f.733278059.793550617openalex-snapshot

Faculty Opinions recommendation of Group I introns are widespread in archaea.

inferred← citeshttps://doi.org/10.3410/f.733278059.793552780openalex-snapshot

Faculty Opinions recommendation of Group I introns are widespread in archaea.

inferred← citeshttps://doi.org/10.5772/intechopen.76051openalex-snapshot

Modulation of Gene Expression by Gene Architecture and Promoter Structure

inferred← citeshttps://doi.org/10.6084/m9.figshare.14177103openalex-snapshot

Additional file 1 of Methylation of rRNA as a host defense against rampant group II intron retrotransposition

inferred← citeshttps://doi.org/10.70675/0a108ecazc435z4d3bza24dz983c27de2b63openalex-snapshot

Analyse fonctionnelle de cibles végétales d’effecteurs du parasitisme du nématode Meloidogyne incognita impliquées dans l’ontogénèse des cellules géantes

inferred← citeshttps://doi.org/10.70675/29eb14fdzf43cz4134z93bazdb1fc926cca9openalex-snapshot

Functional diversity within a ribosomal-like protein family in Arabidopsis thaliana

inferred← citeshttps://doi.org/10.70675/c9da71c3zac1cz426fz8f3az8a3c7fcf3c17openalex-snapshot

Annotation computationnelle de génomes : des organismes uniques aux communautés complexes

inferred← citeshttps://doi.org/10.7124/visnyk.utgis.22.1-2.1683openalex-snapshot

Analysis of nucleotide sequences of bacterial retrointrons for the presence of homology to eukaryotic MGE

inferred← citeshttps://doi.org/10.7554/elife.34268openalex-snapshot

Group II intron inhibits conjugative relaxase expression in bacteria by mRNA targeting

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