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A functional twintron, ‘zombie’ twintrons and a hypermobile group II intron invading itself in plant mitochondria

https://doi.org/10.1093/nar/gkz1194
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Group II twintron: an intron within an intron in a chloroplast cytochrome b‐559 gene.
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Chloroplast group III twintron excision utilizing multiple 5′‐ and 3′‐splice sites.
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Group II introns: versatile ribozymes and retroelements
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Transposable Group II Introns in Fission and Budding Yeast.
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Genomics of Chloroplasts and Mitochondria
inferredcites →https://doi.org/10.1007/bf00175814openalex-snapshot
Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric coxI gene of Peperomia
inferredcites →https://doi.org/10.1007/bf00290141openalex-snapshot
Twintrons are not unique to the Euglena chloroplast genome: structure and evolution of a plastome cpn60 gene from a cryptomonad
inferredcites →https://doi.org/10.1007/s00239-002-2324-2openalex-snapshot
Divergent Intron Conservation in the Mitochondrial nad2 Gene: Signatures for the Three Bryophyte Classes (Mosses, Liverworts, and Hornworts) and the Lycophytes
inferredcites →https://doi.org/10.1007/s00239-004-2606-yopenalex-snapshot
Many Independent Origins of trans Splicing of a Plant Mitochondrial Group II Intron
inferredcites →https://doi.org/10.1007/s00239-004-5951-yopenalex-snapshot
Many Independent Origins of trans Splicing of a Plant Mitochondrial Group II Intron
inferredcites →https://doi.org/10.1007/s00239-009-9240-7openalex-snapshot
The Complete Mitochondrial Genome Sequence of the Hornwort Megaceros aenigmaticus Shows a Mixed Mode of Conservative Yet Dynamic Evolution in Early Land Plant Mitochondrial Genomes
inferredcites →https://doi.org/10.1007/s00239-013-9579-7openalex-snapshot
Evolution of Plant Mitochondrial Intron-Encoded Maturases: Frequent Lineage-Specific Loss and Recurrent Intracellular Transfer to the Nucleus
inferredcites →https://doi.org/10.1007/s00294-004-0522-8openalex-snapshot
The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective
inferredcites →https://doi.org/10.1007/s00294-009-0279-1openalex-snapshot
The complete mitochondrial genome sequence of the hornwort Phaeoceros laevis: retention of many ancient pseudogenes and conservative evolution of mitochondrial genomes in hornworts
inferredcites →https://doi.org/10.1007/s002940050180openalex-snapshot
Two new group-II twintrons in the Euglena gracilis chloroplast are absent in basally branching Euglena species
inferredcites →https://doi.org/10.1007/s004380100577openalex-snapshot
Mosses share mitochondrial group II introns with flowering plants, not with liverworts
inferredcites →https://doi.org/10.1016/0378-1119(89)90026-7openalex-snapshot
Comparative and functional anatomy of group II catalytic introns — a review
inferredcites →https://doi.org/10.1016/j.bbabio.2015.01.009openalex-snapshot
Organellar maturases: A window into the evolution of the spliceosome
inferredcites →https://doi.org/10.1016/j.bbagrm.2019.06.001openalex-snapshot
The mechanism of splicing as told by group II introns: Ancestors of the spliceosome
inferredcites →https://doi.org/10.1016/j.cell.2019.06.035openalex-snapshot
Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA
inferredcites →https://doi.org/10.1016/j.fgb.2013.01.005openalex-snapshot
The mtDNA rns gene landscape in the Ophiostomatales and other fungal taxa: Twintrons, introns, and intron-encoded proteins
inferredcites →https://doi.org/10.1016/j.fgb.2014.01.004openalex-snapshot
A homing endonuclease with a switch: Characterization of a twintron encoded homing endonuclease
inferredcites →https://doi.org/10.1016/j.sbi.2017.05.002openalex-snapshot
The group II intron maturase: a reverse transcriptase and splicing factor go hand in hand
inferredcites →https://doi.org/10.1016/j.tig.2017.07.009openalex-snapshot
Mobile Group II Introns as Ancestral Eukaryotic Elements
inferredcites →https://doi.org/10.1016/j.ympev.2003.12.013openalex-snapshot
Distribution of introns in the mitochondrial gene nad1 in land plants: phylogenetic and molecular evolutionary implications
inferredcites →https://doi.org/10.1016/j.ympev.2015.09.024openalex-snapshot
Molecular phylogenetics and the morphology of the Lycopodiaceae subfamily Huperzioideae supports three genera: Huperzia, Phlegmariurus and Phylloglossum
inferredcites →https://doi.org/10.1016/s0168-1656(98)00104-7openalex-snapshot
Group I twintrons: Genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs
inferredcites →https://doi.org/10.1017/s1355838298981262openalex-snapshot
Trans-splicing group II introns in plant mitochondria: The complete set of cis-arranged homologs in ferns, fern allies, and a hornwort
inferredcites →https://doi.org/10.1021/acs.chemrev.7b00499openalex-snapshot
Molecular Mechanism and Evolution of Nuclear Pre-mRNA and Group II Intron Splicing: Insights from Cryo-Electron Microscopy Structures
inferredcites →https://doi.org/10.1038/29286openalex-snapshot
The gain of three mitochondrial introns identifies liverworts as the earliest land plants
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/s41598-019-46435-xopenalex-snapshot
A spliceosomal twin intron (stwintron) participates in both exon skipping and evolutionary exon loss
inferredcites →https://doi.org/10.1038/s41598-020-63239-6openalex-snapshot
Complex intron generation in the yeast genus Lipomyces
inferredcites →https://doi.org/10.1038/srep16829openalex-snapshot
Sequential splicing of a group II twintron in the marine cyanobacterium Trichodesmium
inferredcites →https://doi.org/10.1046/j.1365-2958.1997.3921743.xopenalex-snapshot
In vivo mobility of a group I twintron in nuclear ribosomal DNA of the myxomycete Didymium iridis
inferredcites →https://doi.org/10.1071/sb04012openalex-snapshot
Generic concepts within hornworts: historical review, contemporary insights and future directions
inferredcites →https://doi.org/10.1073/pnas.0603335103openalex-snapshot
The deepest divergences in land plants inferred from phylogenomic evidence
inferredcites →https://doi.org/10.1073/pnas.0909400107openalex-snapshot
An organellar maturase associates with multiple group II introns
inferredcites →https://doi.org/10.1073/pnas.231494498openalex-snapshot
Retrotransposition of a yeast group II intron occurs by reverse splicing directly into ectopic DNA sites
inferredcites →https://doi.org/10.1073/pnas.95.24.14244openalex-snapshot
Explosive invasion of plant mitochondria by a group I intron
inferredcites →https://doi.org/10.1080/15476286.2015.1066956openalex-snapshot
Group II intron lariat: Structural insights into the spliceosome
inferredcites →https://doi.org/10.1080/15476286.2015.1103427openalex-snapshot
Convergent evolution of twintron-like configurations: One is never enough
inferredcites →https://doi.org/10.1080/15476286.2016.1244595openalex-snapshot
Forks in the tracks: Group II introns, spliceosomes, telomeres and beyond
inferredcites →https://doi.org/10.1081/pb-200026790openalex-snapshot
Rapid Isolation of High‐Quality Total RNA from Taxus and Ginkgo
inferredcites →https://doi.org/10.1093/bioinformatics/btp250openalex-snapshot
VARNA: Interactive drawing and editing of the RNA secondary structure
inferredcites →https://doi.org/10.1093/bioinformatics/btv033openalex-snapshot
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
inferredcites →https://doi.org/10.1093/gbe/evr027openalex-snapshot
Extreme RNA Editing in Coding Islands and Abundant Microsatellites in Repeat Sequences of Selaginella moellendorffii Mitochondria: The Root of Frequent Plant mtDNA Recombination in Early Tracheophytes
inferredcites →https://doi.org/10.1093/gbe/evw173openalex-snapshot
Convergent Evolution of Fern-Specific Mitochondrial Group II Intron atp1i361g2 and Its Ancient Source Paralogue rps3i249g2 and Independent Losses of Intron and RNA Editing among Pteridaceae
inferredcites →https://doi.org/10.1093/gbe/evw233openalex-snapshot
Loss of aTrans-Splicingnad1Intron from Geraniaceae and Transfer of the Maturase GenematRto the Nucleus inPelargonium
inferredcites →https://doi.org/10.1093/gbe/evz032openalex-snapshot
Multifarious Evolutionary Pathways of a Nuclear RNA Editing Factor: Disjunctions in Coevolution of DOT4 and Its Chloroplast Target rpoC1eU488SL
inferredcites →https://doi.org/10.1093/genetics/158.3.1289openalex-snapshot
Multiple Losses and Transfers to the Nucleus of Two Mitochondrial Succinate Dehydrogenase Genes During Angiosperm Evolution
inferredcites →https://doi.org/10.1093/jxb/erz305openalex-snapshot
PPR-SMR1 is required for the splicing of multiple mitochondrial introns, interacts with Zm-mCSF1, and is essential for seed development in maize
inferredcites →https://doi.org/10.1093/molbev/msh259openalex-snapshot
Ancestors of Trans-Splicing Mitochondrial Introns Support Serial Sister Group Relationships of Hornworts and Mosses with Vascular Plants
inferredcites →https://doi.org/10.1093/molbev/msm026openalex-snapshot
Evolution of a Pseudogene: Exclusive Survival of a Functional Mitochondrial nad7 Gene Supports Haplomitrium as the Earliest Liverwort Lineage and Proposes a Secondary Loss of RNA Editing in Marchantiidae
inferredcites →https://doi.org/10.1093/molbev/msm241openalex-snapshot
Reevaluation of the cox1 Group I Intron in Araceae and Angiosperms Indicates a History Dominated by Loss rather than Horizontal Transfer
inferredcites →https://doi.org/10.1093/molbev/msn129openalex-snapshot
Frequent, Phylogenetically Local Horizontal Transfer of the cox1 Group I Intron in Flowering Plant Mitochondria
inferredcites →https://doi.org/10.1093/molbev/mss130openalex-snapshot
Loss of Two Introns from the Magnolia tripetala Mitochondrial cox2 Gene Implicates Horizontal Gene Transfer and Gene Conversion as a Novel Mechanism of Intron Loss
inferredcites →https://doi.org/10.1093/molbev/msw024openalex-snapshot
GinkgoandWelwitschiaMitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution
inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
inferredcites →https://doi.org/10.1093/nar/19.23.6491openalex-snapshot
A mixed group II/group III twintron in theEuglena gracilischloroplast ribosomal protein S3 gene: evidence for intron insertion during gene evolution
inferredcites →https://doi.org/10.1093/nar/21.10.2389openalex-snapshot
A complex twintron is excised as four individual introns
inferredcites →https://doi.org/10.1093/nar/22.6.1029openalex-snapshot
A group III twintron encoding a maturase-like gene excises through lariat intermediates
inferredcites →https://doi.org/10.1093/nar/23.23.4745openalex-snapshot
Evidence for the late origin of introns in chloroplast genes from an evolutionary analysis of the genusEuglena
inferredcites →https://doi.org/10.1093/nar/24.6.1008openalex-snapshot
Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants
inferredcites →https://doi.org/10.1093/nar/gkp532openalex-snapshot
A trans -splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii
inferredcites →https://doi.org/10.1093/nar/gkq1019openalex-snapshot
The Sequence Read Archive
inferredcites →https://doi.org/10.1093/nar/gkq1227openalex-snapshot
A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii
inferredcites →https://doi.org/10.1093/nar/gks226openalex-snapshot
Structural, functional and evolutionary relationships between homing endonucleases and proteins from their host organisms
inferredcites →https://doi.org/10.1093/nar/gkx520openalex-snapshot
A mechanism for a single nucleotide intron shift
inferredcites →https://doi.org/10.1093/nar/gkz238openalex-snapshot
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026206openalex-snapshot
Multiple acquisitions via horizontal transfer of a group I intron in the mitochondrial cox1 gene during evolution of the Araceae family
inferredcites →https://doi.org/10.1101/cshperspect.a032375openalex-snapshot
Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools
inferredcites →https://doi.org/10.1105/tpc.16.00398openalex-snapshot
The Reverse Transcriptase/RNA Maturase Protein MatR Is Required for the Splicing of Various Group II Introns in Brassicaceae Mitochondria
inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04849.xopenalex-snapshot
A PORR domain protein required for rpl2 and ccmF C intron splicing and for the biogenesis of c ‐type cytochromes in Arabidopsis mitochondria
inferredcites →https://doi.org/10.1111/j.1438-8677.2011.00499.xopenalex-snapshot
Exclusive conservation of mitochondrial group II intron nad4i548 among liverworts and its use for phylogenetic studies in this ancient plant clade
inferredcites →https://doi.org/10.1111/j.1759-6831.2012.00228.xopenalex-snapshot
Plant mitochondrial genome peculiarities evolving in the earliest vascular plant lineages
inferredcites →https://doi.org/10.1111/nph.12282openalex-snapshot
m CSF 1, a nucleus‐encoded CRM protein required for the processing of many mitochondrial introns, is involved in the biogenesis of respiratory complexes I and IV in A rabidopsis
inferredcites →https://doi.org/10.1111/nph.16297openalex-snapshot
Towards a plant model for enigmatic U‐to‐C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis
inferredcites →https://doi.org/10.1128/mcb.20.22.8432-8446.2000openalex-snapshot
Multiple Homing Pathways Used by Yeast Mitochondrial Group II Introns
inferredcites →https://doi.org/10.1128/mcb.24.5.1855-1869.2004openalex-snapshot
An Intronic Enhancer Regulates Splicing of the Twintron of Drosophila melanogaster prospero Pre-mRNA by Two Different Spliceosomes
inferredcites →https://doi.org/10.1139/gen-2013-0041openalex-snapshot
Genome size increases in recently diverged hornwort clades
inferredcites →https://doi.org/10.11646/bde.31.1.10openalex-snapshot
Looking for sense in the nonsense: a short review of non-coding organellar DNA elucidatingn the phylogeny of bryophytes
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2148-11-277openalex-snapshot
Multiple recent horizontal transfers of the cox1intron in Solanaceae and extended co-conversion of flanking exons
inferredcites →https://doi.org/10.1186/1745-6150-7-11openalex-snapshot
Origin and evolution of spliceosomal introns
inferredcites →https://doi.org/10.1186/1745-6150-8-4openalex-snapshot
Surprisingly high number of Twintrons in vertebrates
inferredcites →https://doi.org/10.1186/1759-8753-5-7openalex-snapshot
Homing endonucleases from mobile group I introns: discovery to genome engineering
inferredcites →https://doi.org/10.1186/s12870-015-0481-xopenalex-snapshot
Establishment of Anthoceros agrestis as a model species for studying the biology of hornworts
inferredcites →https://doi.org/10.1186/s13062-017-0201-6openalex-snapshot
Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery
inferredcites →https://doi.org/10.1186/s13100-015-0037-5openalex-snapshot
Evolution of group II introns
inferredcites →https://doi.org/10.1261/rna.056572.116openalex-snapshot
Monilophyte mitochondrial rps1 genes carry a unique group II intron that likely originated from an ancient paralog in rpl2
inferredcites →https://doi.org/10.1261/rna.7181105openalex-snapshot
Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase
inferredcites →https://doi.org/10.1371/journal.pone.0035168openalex-snapshot
The Mitochondrial Genome of the Lycophyte Huperzia squarrosa: The Most Archaic Form in Vascular Plants
inferredcites →https://doi.org/10.1371/journal.pone.0053433openalex-snapshot
Evidence for Transitional Stages in the Evolution of Euglenid Group II Introns and Twintrons in the Monomorphina aenigmatica Plastid Genome
inferredcites →https://doi.org/10.1371/journal.pone.0200491openalex-snapshot
Genome-wide organellar analyses from the hornwort Leiosporoceros dussii show low frequency of RNA editing
inferredcites →https://doi.org/10.1515/bc.2007.090openalex-snapshot
Group II introns: structure, folding and splicing mechanism
inferredcites →https://doi.org/10.1639/0007-2745(2007)110[214:pactda]2.0.co;2openalex-snapshot
Progress and challenges toward developing a phylogeny and classification of the hornworts
inferredcites →https://doi.org/10.1639/0007-2745-121.1.014openalex-snapshot
Complete mitochondrial genome sequence of Anthoceros angustus: conservative evolution of the mitogenomes in hornworts
inferredcites →https://doi.org/10.3389/fmicb.2018.02079openalex-snapshot
Comparison of the Mitochondrial Genome Sequences of Six Annulohypoxylon stygium Isolates Suggests Short Fragment Insertions as a Potential Factor Leading to Larger Genomic Size
inferredcites →https://doi.org/10.3389/fpls.2014.00035openalex-snapshot
Group II intron splicing factors in plant mitochondria
inferredcites →https://doi.org/10.3390/ijms17071049openalex-snapshot
Analysis of the Mitochondrial Genome in Hypomyces aurantius Reveals a Novel Twintron Complex in Fungi
inferredcites →https://doi.org/10.7717/peerj.1017openalex-snapshot
Recent mobility of plastid encoded group II introns and twintrons in five strains of the unicellular red alga Porphyridium

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Characterization of the mitochondrial genomes for Ophiostoma ips and related taxa from various geographic origins and related species: large intron-rich genomes and complex intron arrangements
inferred← citeshttps://doi.org/10.1016/b978-0-12-822563-9.00167-0openalex-snapshot
Intron Homing
inferred← citeshttps://doi.org/10.1016/j.mito.2020.06.002openalex-snapshot
Variation in protein gene and intron content among land plant mitogenomes
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107236openalex-snapshot
In and out: Evolution of viral sequences in the mitochondrial genomes of legumes (Fabaceae)
inferred← citeshttps://doi.org/10.1038/s41598-020-63239-6openalex-snapshot
Complex intron generation in the yeast genus Lipomyces
inferred← citeshttps://doi.org/10.1093/molbev/msaf241openalex-snapshot
High Conservation of Translation-Enabling RNA Editing Sites in Hyper-editing Ferns Implies They Are Not Selectively Neutral
inferred← citeshttps://doi.org/10.1111/tpj.16775openalex-snapshot
Insights into U‐to‐C RNA editing from the lycophyte Phylloglossum drummondii
inferred← citeshttps://doi.org/10.11646/bde.43.1.9openalex-snapshot
The mitochondrial genomes of bryophytes
inferred← citeshttps://doi.org/10.1186/s12862-023-02108-yopenalex-snapshot
Categorizing 161 plant (streptophyte) mitochondrial group II introns into 29 families of related paralogues finds only limited links between intron mobility and intron-borne maturases
inferred← citeshttps://doi.org/10.1186/s12915-021-01200-3openalex-snapshot
Group II intron and repeat-rich red algal mitochondrial genomes demonstrate the dynamic recent history of autocatalytic RNAs
inferred← citeshttps://doi.org/10.1360/csb-2025-0378openalex-snapshot
Structural-functional dynamics of group II introns in plant mitochondria: splicing diversity-driven genome plasticity and regulatory adaptation
inferred← citeshttps://doi.org/10.3389/fmicb.2021.618649openalex-snapshot
The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1240407openalex-snapshot
The mitogenomes of Leptographium aureum, Leptographium sp., and Grosmannia fruticeta: expansion by introns
inferred← citeshttps://doi.org/10.3390/cells10082001openalex-snapshot
Organellar Introns in Fungi, Algae, and Plants
inferred← citeshttps://doi.org/10.6084/m9.figshare.18070795openalex-snapshot
Additional file 1 of Group II intron and repeat-rich red algal mitochondrial genomes demonstrate the dynamic recent history of autocatalytic RNAs
inferred← citeshttps://doi.org/10.70675/669245a3z8a42z4953zbaedz2ce6b4472fd5openalex-snapshot
Maturation des ARN messagers mitochondriaux et système traductionnel chez l’algue verte Chlamydomonas reinhardtii
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