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Using phylogenomics to understand the link between biogeographic origins and regional diversification in ratsnakes

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Theoretical and Computational Methods in Genome Research
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Evaluating the Statistical Significance of Multiple Distinct Local Alignments
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HISTORICAL BIOGEOGRAPHY OF THE HOLARCTIC: AREA RELATIONSHIPS, ANCESTRAL AREAS, AND DISPERSAL OF NON‐MARINE ANIMALS
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Estimating diversification rates from phylogenetic information
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How and when did Old World ratsnakes disperse into the New World?
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Assessing species boundaries and the phylogenetic position of the rare Szechwan ratsnake, Euprepiophis perlaceus (Serpentes: Colubridae), using coalescent-based methods
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Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures
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Under-parameterized Model of Sequence Evolution Leads to Bias in the Estimation of Diversification Rates from Molecular Phylogenies
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A Rapid Bootstrap Algorithm for the RAxML Web Servers
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How Should Species Phylogenies Be Inferred from Sequence Data?
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Species Richness at Continental Scales Is Dominated by Ecological Limits
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Species Diversity Is Dynamic and Unbounded at Local and Continental Scales
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Reconciled trees and incongruent gene and species trees
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ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
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Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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The Ecology of Adaptive Radiation
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Relationships between gene trees and species trees.
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The Triples Distance for Rooted Bifurcating Phylogenetic Trees
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Gene Trees in Species Trees
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Accommodating Heterogenous Rates of Evolution in Molecular Divergence Dating Methods: An Example Using Intercontinental Dispersal of Plestiodon (Eumeces) Lizards
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The Shape and Temporal Dynamics of Phylogenetic Trees Arising from Geographic Speciation
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Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification
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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
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Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
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Coalescent Species Delimitation in Milksnakes (Genus Lampropeltis) and Impacts on Phylogenetic Comparative Analyses
inferredcites →https://doi.org/10.1093/sysbio/syu131openalex-snapshot
Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation
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Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record
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A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
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The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)
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Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes
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A Contribution to the Classification of Snakes
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Species Diversity in Space and Time.
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THE MAJOR FEATURES OF EVOLUTION
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Molecular Systematics and Phylogeny of Old and New World Ratsnakes, Elaphe Auct., and Related Genera (Reptilia, Squamata, Colubridae)
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AIC model selection using Akaike weights
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TreeCmp: Comparison of Trees in Polynomial Time
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The oldest known Miocene snake fauna from Central Europe: Merkur-North locality, Czech Republic
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Species diversity in space and time
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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Speciation rates are unrelated to the formation of population structure in Malagasy gemsnakes
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Recalcitrant deep and shallow nodes in Aristolochia (Aristolochiaceae) illuminated using anchored hybrid enrichment
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Hidden diversity within the depauperate genera of the snake tribe Lampropeltini (Serpentes, Colubridae)
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Desert ecosystems shape diversification in glossy snakes (genus Arizona) requiring a re-alignment of evolutionary and conservation units
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Considering admixture when producing draft genomes: an example in North American ratsnakes (Pantherophis alleghaniensis/Pantherophis obsoletus)
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A chromosome-level genome assembly and annotation for the beauty snake Elaphe taeniura
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Mean and Variance of Phylogenetic Trees
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Novel phylogenomic inference and ‘Out of Asia’ biogeography of cobras, coral snakes and their allies
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COAL_PHYRE: A Composite Likelihood Method for Estimating Species Tree Parameters from Genomic Data Using Coalescent Theory
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Complex cycles of divergence and migration shape lineage structure in the common kingsnake species complex
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Environmental heterogeneity and not vicariant biogeographic barriers generate community‐wide population structure in desert‐adapted snakes
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Biogeographic barriers, Pleistocene refugia, and climatic gradients in the southeastern Nearctic drive diversification in cornsnakes (Pantherophis guttatus complex)
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Evolution, biogeography and systematics of the western Palaearctic Zamenis ratsnakes
inferred← citeshttps://doi.org/10.1126/science.adh2449openalex-snapshot
The macroevolutionary singularity of snakes
inferred← citeshttps://doi.org/10.1371/journal.pone.0309120openalex-snapshot
Biogeography of the Iranian snakes
inferred← citeshttps://doi.org/10.1643/h2020034openalex-snapshot
Geographic Variation in the Green Rat Snake Senticolis triaspis (Squamata: Colubridae): Evidence from Mitochondrial DNA, Morphology, and Niche Modeling
inferred← citeshttps://doi.org/10.17520/biods.2019238openalex-snapshot
The updated checklists of amphibians and reptiles of China
inferred← citeshttps://doi.org/10.3389/famrs.2026.1805243openalex-snapshot
A novel eDNA assay for detection of the enigmatic eastern pine snake (Pituophis melanoleucus)
inferred← citeshttps://doi.org/10.3390/ani13030471openalex-snapshot
Genome Evolution and the Future of Phylogenomics of Non-Avian Reptiles
inferred← citeshttps://doi.org/10.3390/d12020070openalex-snapshot
Phylogenomic Reconstruction Sheds Light on New Relationships and Timescale of Rails (Aves: Rallidae) Evolution
inferred← citeshttps://doi.org/10.3390/genes14061130openalex-snapshot
A Pervasive History of Gene Flow in Madagascar’s True Lemurs (Genus Eulemur)
inferred← citeshttps://doi.org/10.3897/evolsyst.5.66574openalex-snapshot
A new species of Gonyosoma Wagler, 1828 (Serpentes, Colubridae), previously confused with G. prasinum (Blyth, 1854)
inferred← citeshttps://doi.org/10.3897/zookeys.1048.65650openalex-snapshot
A sheep in wolf's clothing: Elaphe xiphodonta sp. nov. (Squamata, Colubridae) and its possible mimicry to Protobothrops jerdonii
inferred← citeshttps://doi.org/10.7717/peerj.17277openalex-snapshot
Fossil-informed biogeographic analysis suggests Eurasian regionalization in crown Squamata during the early Jurassic
inferred← citeshttps://doi.org/10.7717/peerj.6944openalex-snapshot
The biogeography ofElaphe sauromates(Pallas, 1814), with a description of a new rat snake species
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