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Genome Evolution and the Future of Phylogenomics of Non-Avian Reptiles
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Population Genetic Inference With MIGRATE
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Assessing models of speciation under different biogeographic scenarios; an empirical study using multi‐locus and RNA ‐seq analyses
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Genomic timetree and historical biogeography of Caribbean island ameiva lizards (Pholidoscelis: Teiidae)
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Is RAD ‐seq suitable for phylogenetic inference? An in silico assessment and optimization
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Sex‐determining mechanisms in squamate reptiles
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Amniote Phylogenomics: Testing Evolutionary Hypotheses with BAC Library Scanning and Targeted Clone Analysis of Large-Scale DNA Sequences from Reptiles
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Molecular Methods for Evolutionary Genetics
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Reduced Representation Methods for Subgenomic Enrichment and Next-Generation Sequencing
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SNP Discovery and Genotyping for Evolutionary Genetics Using RAD Sequencing
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Sex Chromosomes and Sex-Linked Genes
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Venom Genomics and Proteomics
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Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores
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Natural parthenogenesis in the gekkonid lizardLepidodactylus lugubris
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Patterns of Vertebrate Isochore Evolution Revealed by Comparison of Expressed Mammalian, Avian, and Crocodilian Genes
inferredcites →https://doi.org/10.1007/s10709-005-8008-2openalex-snapshot
Rate of Chromosome changes and Speciation in Reptiles
inferredcites →https://doi.org/10.1007/s10709-006-0009-2openalex-snapshot
Diversity in isochore structure among cold-blooded vertebrates based on GC content of coding and non-coding sequences
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Multilocus phylogeography and phylogenetics using sequence-based markers
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The distribution of genes in the human genome
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Macroevolution and the Genome
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A “Forward Genomics” Approach Links Genotype to Phenotype using Independent Phenotypic Losses among Related Species
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Convergent and lineage-specific genomic differences in limb regulatory elements in limbless reptile lineages
inferredcites →https://doi.org/10.1016/j.cub.2017.06.010openalex-snapshot
The Discovery of XY Sex Chromosomes in a Boa and Python
inferredcites →https://doi.org/10.1016/j.gene.2007.05.025openalex-snapshot
Isochore pattern and gene distribution in the chicken genome
inferredcites →https://doi.org/10.1016/j.gene.2007.11.016openalex-snapshot
Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes
inferredcites →https://doi.org/10.1016/j.gene.2008.11.030openalex-snapshot
The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis
inferredcites →https://doi.org/10.1016/j.gene.2009.08.017openalex-snapshot
Independent and parallel lateral transfer of DNA transposons in tetrapod genomes
inferredcites →https://doi.org/10.1016/j.jcz.2016.04.003openalex-snapshot
Reproductive modes of the South American water snakes: A study system for the evolution of viviparity in squamate reptiles
inferredcites →https://doi.org/10.1016/j.tig.2008.10.011openalex-snapshot
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
inferredcites →https://doi.org/10.1016/j.tig.2010.12.002openalex-snapshot
Unisexual reproduction among vertebrates
inferredcites →https://doi.org/10.1016/j.tree.2009.01.009openalex-snapshot
Gene tree discordance, phylogenetic inference and the multispecies coalescent
inferredcites →https://doi.org/10.1016/j.tree.2020.01.005openalex-snapshot
Phylogenetics is the New Genetics (for Most of Biodiversity)
inferredcites →https://doi.org/10.1016/j.ygeno.2003.09.011openalex-snapshot
Isochore structures in the mouse genome
inferredcites →https://doi.org/10.1016/j.ympev.2008.08.006openalex-snapshot
Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles
inferredcites →https://doi.org/10.1016/j.ympev.2009.12.009openalex-snapshot
Conservation phylogenetics of helodermatid lizards using multiple molecular markers and a supertree approach
inferredcites →https://doi.org/10.1016/j.ympev.2012.02.014openalex-snapshot
Species boundaries and phylogenetic relationships in the critically endangered Asian box turtle genus Cuora
inferredcites →https://doi.org/10.1016/j.ympev.2016.07.007openalex-snapshot
Phylogeny and temporal diversification of the New World pond turtles (Emydidae)
inferredcites →https://doi.org/10.1016/j.ympev.2016.12.009openalex-snapshot
In the shadows: Phylogenomics and coalescent species delimitation unveil cryptic diversity in a Cerrado endemic lizard (Squamata: Tropidurus)
inferredcites →https://doi.org/10.1016/j.ympev.2017.03.017openalex-snapshot
Using phylogenomics to understand the link between biogeographic origins and regional diversification in ratsnakes
inferredcites →https://doi.org/10.1016/j.ympev.2017.07.006openalex-snapshot
Phylogenomic analyses of 539 highly informative loci dates a fully resolved time tree for the major clades of living turtles (Testudines)
inferredcites →https://doi.org/10.1016/j.ympev.2018.03.023openalex-snapshot
Phylogenomic evidence for a recent and rapid radiation of lizards in the Patagonian Liolaemus fitzingerii species group
inferredcites →https://doi.org/10.1016/j.ympev.2019.106589openalex-snapshot
Relicts and radiations: Phylogenomics of an Australasian lizard clade with east Gondwanan origins (Gekkota: Diplodactyloidea)
inferredcites →https://doi.org/10.1016/j.ympev.2020.106731openalex-snapshot
Parachute geckos free fall into synonymy: Gekko phylogeny, and a new subgeneric classification, inferred from thousands of ultraconserved elements
inferredcites →https://doi.org/10.1016/j.ympev.2020.106781openalex-snapshot
Phylogenomic data resolve higher-level relationships within South American Liolaemus lizards
inferredcites →https://doi.org/10.1016/j.ympev.2020.106880openalex-snapshot
Phylogenomics and molecular species delimitation reveals great cryptic diversity of leaf-toed geckos (Phyllodactylidae: Phyllodactylus), ancient origins, and diversification in Mexico
inferredcites →https://doi.org/10.1016/j.ympev.2020.106960openalex-snapshot
Phylogenomics, biogeography and taxonomic revision of New Guinean pythons (Pythonidae, Leiopython) harvested for international trade
inferredcites →https://doi.org/10.1016/j.ympev.2021.107374openalex-snapshot
Phylogenomic analyses resolve relationships among garter snakes (Thamnophis: Natricinae: Colubridae) and elucidate biogeographic history and morphological evolution
inferredcites →https://doi.org/10.1016/j.ympev.2022.107548openalex-snapshot
Phylogenomics and historical biogeography of West Indian Rock Iguanas (genus Cyclura)
inferredcites →https://doi.org/10.1016/j.ympev.2022.107577openalex-snapshot
Phylogenomic data resolve the historical biogeography and ecomorphs of Neotropical forest lizards (Squamata, Diploglossidae)
inferredcites →https://doi.org/10.1016/s0168-9525(02)00002-1openalex-snapshot
Gene conversion drives GC content evolution in mammalian histones
inferredcites →https://doi.org/10.1016/s0168-9525(03)00116-1openalex-snapshot
Biased gene conversion: implications for genome and sex evolution
inferredcites →https://doi.org/10.1016/s0378-1119(02)00732-1openalex-snapshot
Compositional patterns in reptilian genomes
inferredcites →https://doi.org/10.1016/s0378-1119(98)00474-0openalex-snapshot
CpG doublets, CpG islands and Alu repeats in long human DNA sequences from different isochore families
inferredcites →https://doi.org/10.1016/s0378-1119(99)00260-7openalex-snapshot
Molecular evolution of Bov-B LINEs in vertebrates
inferredcites →https://doi.org/10.1016/s0378-1119(99)00485-0openalex-snapshot
Isochores and the evolutionary genomics of vertebrates
inferredcites →https://doi.org/10.1017/s1464793100005595openalex-snapshot
Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma
inferredcites →https://doi.org/10.1038/35057062openalex-snapshot
Initial sequencing and analysis of the human genome
inferredcites →https://doi.org/10.1038/35089135openalex-snapshot
Viviparous lizard selects sex of embryos
inferredcites →https://doi.org/10.1038/nature01262openalex-snapshot
Initial sequencing and comparative analysis of the mouse genome
inferredcites →https://doi.org/10.1038/nature03154openalex-snapshot
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
inferredcites →https://doi.org/10.1038/nature06178openalex-snapshot
Turnover of sex chromosomes induced by sexual conflict
inferredcites →https://doi.org/10.1038/nature06614openalex-snapshot
Broad phylogenomic sampling improves resolution of the animal tree of life
inferredcites →https://doi.org/10.1038/nature07517openalex-snapshot
Accurate whole human genome sequencing using reversible terminator chemistry
inferredcites →https://doi.org/10.1038/nature08789openalex-snapshot
Changes in Hox genes’ structure and function during the evolution of the squamate body plan
inferredcites →https://doi.org/10.1038/nature09774openalex-snapshot
Human-specific loss of regulatory DNA and the evolution of human-specific traits
inferredcites →https://doi.org/10.1038/nature10390openalex-snapshot
The genome of the green anole lizard and a comparative analysis with birds and mammals
inferredcites →https://doi.org/10.1038/nature14574openalex-snapshot
Sex reversal triggers the rapid transition from genetic to temperature-dependent sex
inferredcites →https://doi.org/10.1038/nbt.1523openalex-snapshot
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
inferredcites →https://doi.org/10.1038/ncomms14251openalex-snapshot
Convergent recombination suppression suggests role of sexual selection in guppy sex chromosome formation
inferredcites →https://doi.org/10.1038/nrg.2017.60openalex-snapshot
Vertebrate sex determination: evolutionary plasticity of a fundamental switch
inferredcites →https://doi.org/10.1038/nrg1325openalex-snapshot
Advanced sequencing technologies: methods and goals
inferredcites →https://doi.org/10.1038/nrg2948openalex-snapshot
Sex-chromosome evolution: recent progress and the influence of male and female heterogamety
inferredcites →https://doi.org/10.1038/s41467-018-05279-1openalex-snapshot
Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals
inferredcites →https://doi.org/10.1038/s41467-019-11943-xopenalex-snapshot
Environmental temperatures shape thermal physiology as well as diversification and genome-wide substitution rates in lizards
inferredcites →https://doi.org/10.1038/s41559-019-1050-8openalex-snapshot
Molecular and evolutionary dynamics of animal sex-chromosome turnover
inferredcites →https://doi.org/10.1038/s41559-021-01555-4openalex-snapshot
The functional genetic architecture of egg-laying and live-bearing reproduction in common lizards
inferredcites →https://doi.org/10.1038/s41586-020-2561-9openalex-snapshot
The tuatara genome reveals ancient features of amniote evolution
inferredcites →https://doi.org/10.1038/s41586-020-2871-yopenalex-snapshot
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
inferredcites →https://doi.org/10.1038/s41597-019-0067-9openalex-snapshot
Draft genome of the big-headed turtle Platysternon megacephalum
inferredcites →https://doi.org/10.1038/s41598-021-86373-1openalex-snapshot
Genome-wide data implicate terminal fusion automixis in king cobra facultative parthenogenesis
inferredcites →https://doi.org/10.1038/s42003-020-01639-0openalex-snapshot
Evidence of two deeply divergent co-existing mitochondrial genomes in the Tuatara reveals an extremely complex genomic organization
inferredcites →https://doi.org/10.1038/s42003-022-04074-5openalex-snapshot
Chromosome-scale genome assembly of the brown anole (Anolis sagrei), an emerging model species
inferredcites →https://doi.org/10.1038/sdata.2014.15openalex-snapshot
Tree of Sex: A database of sexual systems
inferredcites →https://doi.org/10.1038/sj.hdy.6800210openalex-snapshot
Molecular genetic evidence for parthenogenesis in the Burmese python, Python molurus bivittatus
inferredcites →https://doi.org/10.1046/j.1365-2052.2000.00565.xopenalex-snapshot
Differences in gene density on chicken macrochromosomes and microchromosomes
inferredcites →https://doi.org/10.1046/j.1461-0248.2002.00351.xopenalex-snapshot
Co‐occurrence of multiple, supposedly incompatible modes of sex determination in a lizard population
inferredcites →https://doi.org/10.1071/zo97023openalex-snapshot
Intraspecific Variation in Reproductive Mode within the Scincid Lizard Saiphos equalis
inferredcites →https://doi.org/10.1073/pnas.0605274103openalex-snapshot
Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes
inferredcites →https://doi.org/10.1073/pnas.0606204104openalex-snapshot
Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome
inferredcites →https://doi.org/10.1073/pnas.0700531104openalex-snapshot
Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals
inferredcites →https://doi.org/10.1073/pnas.0806548105openalex-snapshot
Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods
inferredcites →https://doi.org/10.1073/pnas.0900233106openalex-snapshot
Evidence for an ancient adaptive episode of convergent molecular evolution
inferredcites →https://doi.org/10.1073/pnas.1205856110openalex-snapshot
Widespread horizontal transfer of retrotransposons
inferredcites →https://doi.org/10.1073/pnas.1314475110openalex-snapshot
The Burmese python genome reveals the molecular basis for extreme adaptation in snakes
inferredcites →https://doi.org/10.1073/pnas.1501820112openalex-snapshot
Evolutionary perspectives on clonal reproduction in vertebrate animals
inferredcites →https://doi.org/10.1073/pnas.1616702114openalex-snapshot
Dynamics of genome size evolution in birds and mammals
inferredcites →https://doi.org/10.1073/pnas.1818532116openalex-snapshot
A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales
inferredcites →https://doi.org/10.1073/pnas.2112494118openalex-snapshot
Microchromosomes are building blocks of bird, reptile, and mammal chromosomes
inferredcites →https://doi.org/10.1073/pnas.86.16.6196openalex-snapshot
Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers.
inferredcites →https://doi.org/10.1073/pnas.95.18.10704openalex-snapshot
Unusual horizontal transfer of a long interspersed nuclear element between distant vertebrate classes
inferredcites →https://doi.org/10.1080/10635150601091924openalex-snapshot
Phylogenomic Investigation of CR1 LINE Diversity in Reptiles
inferredcites →https://doi.org/10.1080/11250008409439459openalex-snapshot
Reproductive modes and strategies in vertebrate evolution
inferredcites →https://doi.org/10.1086/285769openalex-snapshot
A New Hypothesis for the Evolution of Viviparity in Reptiles
inferredcites →https://doi.org/10.1086/319501openalex-snapshot
A New Statistical Method for Haplotype Reconstruction from Population Data
inferredcites →https://doi.org/10.1086/342079openalex-snapshot
Evolutionary Dynamics of Intron Size, Genome Size, and Physiological Correlates in Archosaurs
inferredcites →https://doi.org/10.1086/502802openalex-snapshot
A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase
inferredcites →https://doi.org/10.1093/bfgp/elq031openalex-snapshot
RADSeq: next-generation population genetics
inferredcites →https://doi.org/10.1093/bioinformatics/btac308openalex-snapshot
ODGI: understanding pangenome graphs
inferredcites →https://doi.org/10.1093/bioinformatics/btac743openalex-snapshot
Unbiased pangenome graphs
inferredcites →https://doi.org/10.1093/bioinformatics/btl505openalex-snapshot
TimeTree: a public knowledge-base of divergence times among organisms
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btz468openalex-snapshot
RERconverge: an R package for associating evolutionary rates with convergent traits
inferredcites →https://doi.org/10.1093/biolinnean/blab139openalex-snapshot
Phylogenomics of alligator lizards elucidate diversification patterns across the Mexican Transition Zone and support the recognition of a new genus
inferredcites →https://doi.org/10.1093/gbe/evaa063openalex-snapshot
An Annotated Chromosome-Level Reference Genome of the Red-Eared Slider Turtle (Trachemys scripta elegans)
inferredcites →https://doi.org/10.1093/gbe/evaa104openalex-snapshot
Viviparous Reptile Regarded to Have Temperature-Dependent Sex Determination Has Old XY Chromosomes
inferredcites →https://doi.org/10.1093/gbe/evq087openalex-snapshot
Reptiles and Mammals Have Differentially Retained Long Conserved Noncoding Sequences from the Amniote Ancestor
inferredcites →https://doi.org/10.1093/gbe/evr043openalex-snapshot
Discovery of Highly Divergent Repeat Landscapes in Snake Genomes Using High-Throughput Sequencing
inferredcites →https://doi.org/10.1093/gbe/evr072openalex-snapshot
The Anolis Lizard Genome: An Amniote Genome without Isochores
inferredcites →https://doi.org/10.1093/gbe/evv026openalex-snapshot
Phylogenomics of Phrynosomatid Lizards: Conflicting Signals from Sequence Capture versus Restriction Site Associated DNA Sequencing
inferredcites →https://doi.org/10.1093/gbe/evv119openalex-snapshot
Physical Mapping and Refinement of the Painted Turtle Genome (Chrysemys picta) Inform Amniote Genome Evolution and Challenge Turtle-Bird Chromosomal Conservation
inferredcites →https://doi.org/10.1093/gbe/evw056openalex-snapshot
TheAnolisLizard Genome: An Amniote Genome without Isochores?
inferredcites →https://doi.org/10.1093/gbe/evy042openalex-snapshot
Conservation of Sex-Linked Markers among Conspecific Populations of a Viviparous Skink, Niveoscincus ocellatus, Exhibiting Genetic and Temperature-Dependent Sex Determination
inferredcites →https://doi.org/10.1093/genetics/144.3.1247openalex-snapshot
Optimal Sequencing Strategies for Surveying Molecular Genetic Diversity
inferredcites →https://doi.org/10.1093/genetics/159.2.907openalex-snapshot
GC-Content Evolution in Mammalian Genomes: The Biased Gene Conversion Hypothesis
inferredcites →https://doi.org/10.1093/hmg/11.1.13openalex-snapshot
Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: disease-related genes in timing-switch regions
inferredcites →https://doi.org/10.1093/icb/icn010openalex-snapshot
New resources inform study of genome size, content, and organization in nonavian reptiles
inferredcites →https://doi.org/10.1093/icb/icn046openalex-snapshot
Three tiers of genome evolution in reptiles
inferredcites →https://doi.org/10.1093/icb/icn062openalex-snapshot
Turtle isochore structure is intermediate between amphibians and other amniotes
inferredcites →https://doi.org/10.1093/jhered/esac020openalex-snapshot
Landscape Genomics to Enable Conservation Actions: The California Conservation Genomics Project
inferredcites →https://doi.org/10.1093/jhered/esac021openalex-snapshot
Reference Genome of the Northwestern Pond Turtle,Actinemys marmorata
inferredcites →https://doi.org/10.1093/jhered/esac040openalex-snapshot
Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern
inferredcites →https://doi.org/10.1093/jhered/esac048openalex-snapshot
Reference genome of the rubber boa,Charina bottae(Serpentes: Boidae)
inferredcites →https://doi.org/10.1093/jhered/esl040openalex-snapshot
Tuatara (Sphenodon) Genomics: BAC Library Construction, Sequence Survey, and Application to the DMRT Gene Family
inferredcites →https://doi.org/10.1093/jhered/esr080openalex-snapshot
Consecutive Virgin Births in the New World Boid Snake, the Colombian Rainbow Boa, Epicrates maurus
inferredcites →https://doi.org/10.1093/molbev/msaa003openalex-snapshot
Snake Recombination Landscapes Are Concentrated in Functional Regions despite PRDM9
inferredcites →https://doi.org/10.1093/molbev/msaa253openalex-snapshot
Microchromosomes Exhibit Distinct Features of Vertebrate Chromosome Structure and Function with Underappreciated Ramifications for Genome Evolution
inferredcites →https://doi.org/10.1093/molbev/msab199openalex-snapshot
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes
inferredcites →https://doi.org/10.1093/molbev/msh070openalex-snapshot
Recombination Drives the Evolution of GC-Content in the Human Genome
inferredcites →https://doi.org/10.1093/molbev/msj079openalex-snapshot
Accuracy of Coalescent Likelihood Estimates: Do We Need More Sites, More Sequences, or More Loci?
inferredcites →https://doi.org/10.1093/molbev/msp090openalex-snapshot
The Evolutionary Dynamics of Autonomous Non-LTR Retrotransposons in the Lizard Anolis Carolinensis Shows More Similarity to Fish Than Mammals
inferredcites →https://doi.org/10.1093/molbev/msp100openalex-snapshot
Can GC Content at Third-Codon Positions Be Used as a Proxy for Isochore Composition?
inferredcites →https://doi.org/10.1093/molbev/msq244openalex-snapshot
A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters
inferredcites →https://doi.org/10.1093/molbev/msr181openalex-snapshot
Rampant Horizontal Transfer of SPIN Transposons in Squamate Reptiles
inferredcites →https://doi.org/10.1093/molbev/msv023openalex-snapshot
Restriction Site-Associated DNA Sequencing (RAD-seq) Reveals an Extraordinary Number of Transitions among Gecko Sex-Determining Systems
inferredcites →https://doi.org/10.1093/molbev/msw001openalex-snapshot
“Reverse Genomics” Predicts Function of Human Conserved Noncoding Elements
inferredcites →https://doi.org/10.1093/molbev/msw033openalex-snapshot
Life History Traits, Protein Evolution, and the Nearly Neutral Theory in Amniotes
inferredcites →https://doi.org/10.1093/molbev/msx116openalex-snapshot
TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
inferredcites →https://doi.org/10.1093/molbev/msy105openalex-snapshot
Biological Processes Modulating Longevity across Primates: A Phylogenetic Genome-Phenome Analysis
inferredcites →https://doi.org/10.1093/molbev/msz049openalex-snapshot
Bayesian Detection of Convergent Rate Changes of Conserved Noncoding Elements on Phylogenetic Trees
inferredcites →https://doi.org/10.1093/molbev/msz296openalex-snapshot
A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis
inferredcites →https://doi.org/10.1093/nar/gkn502openalex-snapshot
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
inferredcites →https://doi.org/10.1093/nar/gkv1226openalex-snapshot
Assembly: a resource for assembled genomes at NCBI
inferredcites →https://doi.org/10.1093/oso/9780199535033.001.0001openalex-snapshot
The Timetree of Life
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003886openalex-snapshot
Local Rates of Recombination Are Positively Correlated with GC Content in the Human Genome
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026064openalex-snapshot
Warm-blooded isochore structure in Nile crocodile and turtle
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a039994openalex-snapshot
The vertebrate genome: isochores and evolution.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040002openalex-snapshot
PCR-based assays of mendelian polymorphisms from anonymous single-copy nuclear DNA: techniques and applications for population genetics.
inferredcites →https://doi.org/10.1093/sysbio/syaa008openalex-snapshot
The Multispecies Coalescent Model Outperforms Concatenation Across Diverse Phylogenomic Data Sets
inferredcites →https://doi.org/10.1093/sysbio/syaa024openalex-snapshot
Phylogenomics, Biogeography, and Morphometrics Reveal Rapid Phenotypic Evolution in Pythons After Crossing Wallace’s Line
inferredcites →https://doi.org/10.1093/sysbio/syaa046openalex-snapshot
Phylogenomics of Monitor Lizards and the Role of Competition in Dictating Body Size Disparity
inferredcites →https://doi.org/10.1093/sysbio/syaa054openalex-snapshot
Congruence and Conflict in the Higher-Level Phylogenetics of Squamate Reptiles: An Expanded Phylogenomic Perspective
inferredcites →https://doi.org/10.1093/sysbio/syab043openalex-snapshot
Phylogenomic Analysis Reveals Dispersal-Driven Speciation and Divergence with Gene Flow in Lesser Sunda Flying Lizards (Genus Draco)
inferredcites →https://doi.org/10.1093/sysbio/syab047openalex-snapshot
Phase Resolution of Heterozygous Sites in Diploid Genomes is Important to Phylogenomic Analysis under the Multispecies Coalescent Model
inferredcites →https://doi.org/10.1093/sysbio/syab089openalex-snapshot
Interspecific Gene Flow and Mitochondrial Genome Capture during the Radiation of Jamaican Anolis Lizards (Squamata; Iguanidae)
inferredcites →https://doi.org/10.1093/sysbio/sys004openalex-snapshot
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
inferredcites →https://doi.org/10.1093/sysbio/sys049openalex-snapshot
Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
inferredcites →https://doi.org/10.1093/sysbio/syt061openalex-snapshot
Target Capture and Massively Parallel Sequencing of Ultraconserved Elements for Comparative Studies at Shallow Evolutionary Time Scales
inferredcites →https://doi.org/10.1093/sysbio/syw089openalex-snapshot
Accounting for Uncertainty in Gene Tree Estimation: Summary-Coalescent Species Tree Inference in a Challenging Radiation of Australian Lizards
inferredcites →https://doi.org/10.1093/sysbio/syx041openalex-snapshot
Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling
inferredcites →https://doi.org/10.1093/sysbio/syx058openalex-snapshot
Conserved Nonexonic Elements: A Novel Class of Marker for Phylogenomics
inferredcites →https://doi.org/10.1093/sysbio/syy026openalex-snapshot
A Framework for Resolving Cryptic Species: A Case Study from the Lizards of the Australian Wet Tropics
inferredcites →https://doi.org/10.1093/sysbio/syy039openalex-snapshot
Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements
inferredcites →https://doi.org/10.1093/sysbio/syz062openalex-snapshot
Interrogating Genomic-Scale Data for Squamata (Lizards, Snakes, and Amphisbaenians) Shows no Support for Key Traditional Morphological Relationships
inferredcites →https://doi.org/10.1098/rsbl.2007.0583openalex-snapshot
Genetic evidence for co-occurrence of chromosomal and thermal sex-determining systems in a lizard
inferredcites →https://doi.org/10.1098/rsbl.2010.0793openalex-snapshot
Evidence for viable, non-clonal but fatherless Boa constrictors
inferredcites →https://doi.org/10.1098/rsbl.2012.0331openalex-snapshot
More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs
inferredcites →https://doi.org/10.1098/rsbl.2012.0666openalex-snapshot
Facultative parthenogenesis discovered in wild vertebrates
inferredcites →https://doi.org/10.1098/rsbl.2012.0703openalex-snapshot
Resolving the phylogeny of lizards and snakes (Squamata) with extensive sampling of genes and species
inferredcites →https://doi.org/10.1098/rsbl.2017.0393openalex-snapshot
Phylogenomic analyses of more than 4000 nuclear loci resolve the origin of snakes among lizard families
inferredcites →https://doi.org/10.1098/rspb.1977.0148openalex-snapshot
Chromosomal changes in vertebrate evolution
inferredcites →https://doi.org/10.1098/rspb.2016.2806openalex-snapshot
Sex chromosome evolution: historical insights and future perspectives
inferredcites →https://doi.org/10.1098/rspb.2018.2575openalex-snapshot
Habitat preference modulates trans-oceanic dispersal in a terrestrial vertebrate
inferredcites →https://doi.org/10.1098/rstb.2020.0426openalex-snapshot
A brief review of vertebrate sex evolution with a pledge for integrative research: towards ‘ sexomics ’
inferredcites →https://doi.org/10.1101/2022.12.23.521765openalex-snapshot
PhyloAcc-GT: A Bayesian method for inferring patterns of substitution rate shifts and associations with binary traits under gene tree discordance
inferredcites →https://doi.org/10.1101/gr.104372.109openalex-snapshot
Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
inferredcites →https://doi.org/10.1101/gr.125864.111openalex-snapshot
Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
inferredcites →https://doi.org/10.1101/gr.203950.115openalex-snapshot
In silico phylogenomics using complete genomes: a case study on the evolution of hominoids
inferredcites →https://doi.org/10.1101/gr.240952.118openalex-snapshot
The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes
inferredcites →https://doi.org/10.1101/gr.276251.121openalex-snapshot
Snake venom gene expression is coordinated by novel regulatory architecture and the integration of multiple co-opted vertebrate pathways
inferredcites →https://doi.org/10.1101/gr.4910606openalex-snapshot
An isochore map of human chromosomes
inferredcites →https://doi.org/10.1101/gr.6096207openalex-snapshot
The mode and tempo of genome size evolution in eukaryotes
inferredcites →https://doi.org/10.1111/1365-2656.13037openalex-snapshot
The sex‐determination pattern in crocodilians: A systematic review of three decades of research
inferredcites →https://doi.org/10.1111/1755-0998.12655openalex-snapshot
Phylogenomics using formalin‐fixed and 100+ year‐old intractable natural history specimens
inferredcites →https://doi.org/10.1111/1755-0998.12681openalex-snapshot
Squamate Conserved Loci (Sq CL ): A unified set of conserved loci for phylogenomics and population genetics of squamate reptiles
inferredcites →https://doi.org/10.1111/1755-0998.12970openalex-snapshot
Cryptic diversity in the Mexican highlands: Thousands of UCE loci help illuminate phylogenetic relationships, species limits and divergence times of montane rattlesnakes (Viperidae: Crotalus)
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What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/zootaxa.5722.2.1zenodo-depositor-declared
Taxonomic revision of the polyphyletic Phyllodactylus bordai (Squamata: Phyllodactylidae), with the description of a new species
inferred← citeshttps://doi.org/10.1002/pmic.70094openalex-snapshot
Brownotate, a Comprehensive Solution to Generate Protein Sequence Databases for Any Species
inferred← citeshttps://doi.org/10.1007/s10531-023-02772-yopenalex-snapshot
Climate change from an ectotherm perspective: evolutionary consequences and demographic change in amphibian and reptilian populations
inferred← citeshttps://doi.org/10.1007/s11557-023-01932-2openalex-snapshot
Multigene analyses with a broad sampling in Phytophthora and related genera provide evidence for the monophyly of downy mildews
inferred← citeshttps://doi.org/10.1007/s13258-025-01676-1openalex-snapshot
Unravelling the thread of Podarcis omics; insights into the genome and transcriptome of the Cretan wall lizard
inferred← citeshttps://doi.org/10.1038/s41577-024-01083-9openalex-snapshot
Understanding vertebrate immunity through comparative immunology
inferred← citeshttps://doi.org/10.1093/gbe/evad182openalex-snapshot
De Novo Whole Genome Assemblies for Two Southern African Dwarf Chameleons ( Bradypodion , Chamaeleonidae)
inferred← citeshttps://doi.org/10.1093/gbe/evae157openalex-snapshot
Differential Conservation and Loss of Chicken Repeat 1 (CR1) Retrotransposons in Squamates Reveal Lineage-Specific Genome Dynamics Across Reptiles
inferred← citeshttps://doi.org/10.1093/jhered/esad014openalex-snapshot
A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei
inferred← citeshttps://doi.org/10.1093/jhered/esad023openalex-snapshot
A lizard is never late: Squamate genomics as a recent catalyst for understanding sex chromosome and microchromosome evolution
inferred← citeshttps://doi.org/10.1093/jhered/esae026openalex-snapshot
Whole snake genomes from eighteen families of snakes (Serpentes: Caenophidia) and their applications to systematics
inferred← citeshttps://doi.org/10.1093/jhered/esae054openalex-snapshot
The genome of the Australian water dragon (Intellagama lesueurii), an agamid model for urban adaptation
inferred← citeshttps://doi.org/10.1093/jhered/esae075openalex-snapshot
Insights from the timber rattlesnake (Crotalus horridus) genome for MHC gene architecture and evolution in threatened rattlesnakes
inferred← citeshttps://doi.org/10.1093/molbev/msag067openalex-snapshot
Sex chromosome identification and genome curation from a single individual with SCINKD
inferred← citeshttps://doi.org/10.1093/molbev/msag155openalex-snapshot
Phylogenomic blind spots: the limits of UCE and BUSCO loci in the presence of gene flow
inferred← citeshttps://doi.org/10.1093/sysbio/syae032openalex-snapshot
Integrating Genomics and Biogeography to Unravel the Origin of a Mountain Biota: The Case of a Reptile Endemicity Hotspot in Arabia
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlaf131openalex-snapshot
The Golfo Dulce yellow sea snake (Elapidae: Hydrophis platurus xanthos) from morphological and molecular perspectives
inferred← citeshttps://doi.org/10.1098/rspb.2025.2899openalex-snapshot
Population-scale long-read DNA sequencing: peering under the hood of the new evolutionary genomics
inferred← citeshttps://doi.org/10.1111/1749-4877.12898openalex-snapshot
Chromosome‐level genome of diamondback terrapin provides insight into the genetic basis of salinity adaptation
inferred← citeshttps://doi.org/10.1111/mec.17451openalex-snapshot
Clinging on the brink: Whole genomes reveal human‐induced population declines and severe inbreeding in the Critically Endangered Emirati Leaf‐toed Gecko (Asaccus caudivolvulus)
inferred← citeshttps://doi.org/10.1111/syen.12668openalex-snapshot
Phylogenomics reveals the timescale of diversification in Amblycera
inferred← citeshttps://doi.org/10.1159/000544908openalex-snapshot
In situ and in silico Localization of Major Satellite DNAs in the Genome of the Red-Eared Slider (Trachemys scripta elegans, Emydidae, Testudines)
inferred← citeshttps://doi.org/10.1186/s12915-023-01772-2openalex-snapshot
New chromosome-scale genomes provide insights into marine adaptations of sea snakes (Hydrophis: Elapidae)
inferred← citeshttps://doi.org/10.3390/ani13121924openalex-snapshot
Reptile Evolution and Genetics: An Overview
inferred← citeshttps://doi.org/10.3390/genes16111301openalex-snapshot
Contrasting Satellitomes in New World and African Trogons (Aves, Trogoniformes)
inferred← citeshttps://doi.org/10.3390/math13030361openalex-snapshot
A Literature Review of Stochastic Modeling for Phylogenetic Comparative Analysis in Trait Evolution
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