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Quantitative Prediction of Protein Folding Behaviors from a Simple Statistical Model
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Energy minimizations with a combination of two knowledge‐based potentials for protein folding
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Protein Stability and Folding
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Combinatorial modeling of protein folding kinetics: free energy profiles and rates
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Tuning λ6–85 Towards Downhill Folding at its Melting Temperature
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Energetics of Protein Structure
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How do small single-domain proteins fold?
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Thermodynamic and Kinetic Analysis of the SH3 Domain of Spectrin Shows a Two-State Folding Transition
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Thermodynamics of protein denaturation. Calorimetric study of the reversible denaturation of chymotrypsinogen and conclusions regarding the accuracy of the two-state approximation
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Determining Denaturation Midpoints in Multiprobe Equilibrium Protein Folding Experiments
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Structure-Based Thermodynamic Scale of α-Helix Propensities in Amino Acids
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Protein Structure and the Energetics of Protein Stability
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Protein Folding Kinetics: Barrier Effects in Chemical and Thermal Denaturation Experiments
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Navigating the Downhill Protein Folding Regime via Structural Homologues
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Expanding the Realm of Ultrafast Protein Folding: gpW, a Midsize Natural Single-Domain with α+β Topology that Folds Downhill
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Effects of Chain Stiffness on the Dynamics of Loop Formation in Polypeptides. Appendix: Testing a 1-Dimensional Diffusion Model for Peptide Dynamics
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Folding dynamics and mechanism of β-hairpin formation
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Atom-by-atom analysis of global downhill protein folding
inferredcites →https://doi.org/10.1063/1.2738473openalex-snapshot
Downhill versus two-state protein folding in a statistical mechanical model
inferredcites →https://doi.org/10.1063/1.3097018openalex-snapshot
Multidimensional theory of protein folding
inferredcites →https://doi.org/10.1063/1.3170984openalex-snapshot
Nearly symmetrical proteins: Folding pathways and transition states
inferredcites →https://doi.org/10.1063/1.3464476openalex-snapshot
Pathways of mechanical unfolding of FnIII10: Low force intermediates
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Analysis of the equilibrium and kinetics of the ankyrin repeat protein myotrophin
inferredcites →https://doi.org/10.1073/pnas.0405829101openalex-snapshot
Exploring protein-folding ensembles: A variable-barrier model for the analysis of equilibrium unfolding experiments
inferredcites →https://doi.org/10.1073/pnas.0705707105openalex-snapshot
Folding domain B of protein A on a dynamically partitioned free energy landscape
inferredcites →https://doi.org/10.1073/pnas.0802986106openalex-snapshot
Dynamics of one-state downhill protein folding
inferredcites →https://doi.org/10.1073/pnas.0804512105openalex-snapshot
Cooperativity, connectivity, and folding pathways of multidomain proteins
inferredcites →https://doi.org/10.1073/pnas.0808600105openalex-snapshot
Chemical, physical, and theoretical kinetics of an ultrafast folding protein
inferredcites →https://doi.org/10.1073/pnas.0912978107openalex-snapshot
Entropic mechanism of large fluctuation in allosteric transition
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Thermodynamic fluctuations in protein molecules.
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A statistical mechanical model for β-hairpin kinetics
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Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures
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A simple model for calculating the kinetics of protein folding from three-dimensional structures
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Exactness of the cluster variation method and factorization of the equilibrium probability for the Wako–Saitô–Muñoz–Eaton model of protein folding
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Rigorous results on the local equilibrium kinetics of a protein folding model
inferredcites →https://doi.org/10.1103/physreve.74.011913openalex-snapshot
Analyses of simulations of three-dimensional lattice proteins in comparison with a simplified statistical mechanical model of protein folding
inferredcites →https://doi.org/10.1103/physrevlett.100.158104openalex-snapshot
Mechanical Unfolding and Refolding Pathways of Ubiquitin
inferredcites →https://doi.org/10.1103/physrevlett.88.258101openalex-snapshot
Exact Solution of the Muñoz-Eaton Model for Protein Folding
inferredcites →https://doi.org/10.1103/physrevlett.97.068106openalex-snapshot
Kinetics of the Wako-Saitô-Muñoz-Eaton Model of Protein Folding
inferredcites →https://doi.org/10.1103/physrevlett.98.148102openalex-snapshot
Ising-Like Model for Protein Mechanical Unfolding
inferredcites →https://doi.org/10.1103/physrevlett.99.038103openalex-snapshot
Rate Determining Factors in Protein Model Structures
inferredcites →https://doi.org/10.1111/j.1399-3011.1975.tb02465.xopenalex-snapshot
STUDIES ON PROTEIN FOLDING, UNFOLDING AND FLUCTUATIONS BY COMPUTER SIMULATION
inferredcites →https://doi.org/10.1126/science.1077809openalex-snapshot
Experimental Identification of Downhill Protein Folding
inferredcites →https://doi.org/10.1143/jpsj.44.1931openalex-snapshot
Statistical Mechanical Theory of the Protein Conformation. I. General Considerations and the Application to Homopolymers
inferredcites →https://doi.org/10.1143/jpsj.44.1939openalex-snapshot
Statistical Mechanical Theory of the Protein Conformation. II. Folding Pathway for Protein
inferredcites →https://doi.org/10.3390/ijms10030889openalex-snapshot
Insights from Coarse-Grained Gō Models for Protein Folding and Dynamics
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Dierential Scanning Calorimetry of Proteins and Zimm-Bragg Model in Water
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Molecular Dynamics Insight into the Diverse Thermodynamic Behavior of a Beta‐Hairpin Peptide
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Coarse‐grained models of protein folding as detailed tools to connect with experiments
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Thermodynamics of protein folding using a modified Wako-Saitô-Muñoz-Eaton model
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Differential scanning calorimetry of proteins and Zimm–Bragg model in water
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Improvement of Structure-Based Potentials for Protein Folding by Native and Nonnative Hydrogen Bonds
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Worm-Like Ising Model for Protein Mechanical Unfolding under the Effect of Osmolytes
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Thermodynamics and folding landscapes of large proteins from a statistical mechanical model
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A hierarchy of coupling free energies underlie the thermodynamic and functional architecture of protein structures
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Bridging Experiments and Native-Centric Simulations of a Downhill Folding Protein
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Quantifying Protein Disorder through Measures of Excess Conformational Entropy
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Statistical Model To Decipher Protein Folding/Unfolding at a Local Scale
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FitFoldData: A Web-Based Toolkit for Circular Dichroism and Differential Scanning Calorimetry Data Analysis of Protein Thermal Denaturation
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Predictions from an Ising-like Statistical Mechanical Model on the Dynamic and Thermodynamic Effects of Protein Surface Electrostatics
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General Mechanism of Two-State Protein Folding Kinetics
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Mapping the Topography of a Protein Energy Landscape
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Evidence for the Sequential Folding Mechanism in RNase H from an Ensemble-Based Model
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Thermodynamics of Downhill Folding: Multi-Probe Analysis of PDD, a Protein that Folds Over a Marginal Free Energy Barrier
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Are Protein Folding Intermediates the Evolutionary Consequence of Functional Constraints?
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Accurate prediction of protein folding mechanisms by simple structure-based statistical mechanical models
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Reversible two-state folding of the ultrafast protein gpW under mechanical force
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Estimation of protein folding free energy barriers from calorimetric data by multi-model Bayesian analysis
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Imprints of function on the folding landscape: functional role for an intermediate in a conserved eukaryotic binding protein
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Toward a quantitative description of microscopic pathway heterogeneity in protein folding
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Non-specific DNA-driven quinary interactions promote structural transitions in proteins
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Comparing a simple theoretical model for protein folding with all-atom molecular dynamics simulations
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Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation
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A Disorder-Induced Domino-Like Destabilization Mechanism Governs the Folding and Functional Dynamics of the Repeat Protein IκBα
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Revisiting the NMR Structure of the Ultrafast Downhill Folding Protein gpW from Bacteriophage λ
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Predictive Modeling of Protein Folding Thermodynamics, Mutational Effects and Free-Energy Landscapes
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Characterization of protein folding by a Φ-value calculation with a statistical-mechanical model
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The Wako-Saitô-Muñoz-Eaton Model for Predicting Protein Folding and Dynamics
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Hashi : Bridging Statistical Model Derived 1D Microstate Encodings and Protein 3D Structural Ensembles
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