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Expanding the Realm of Ultrafast Protein Folding: gpW, a Midsize Natural Single-Domain with α+β Topology that Folds Downhill
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Energy minimizations with a combination of two knowledge‐based potentials for protein folding
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Anti‐cooperativity and cooperativity in hydrophobic interactions: Three‐body free energy landscapes and comparison with implicit‐solvent potential functions for proteins
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The nature of the free energy barriers to two‐state folding
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Probe‐dependent and nonexponential relaxation kinetics: Unreliable signatures of downhill protein folding
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Funnels, pathways, and the energy landscape of protein folding: A synthesis
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Thermodynamics and kinetics of downhill protein folding investigated with a simple statistical mechanical model
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Contact order, transition state placement and the refolding rates of single domain proteins 1 1Edited by P. E. Wright
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Mapping the transition state of the WW domain β-sheet
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The solution structure of bacteriophage λ protein W, a small morphogenetic protein possessing a novel fold11Edited by P. E. Wright
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Characterization of the Folding Energy Landscapes of Computer Generated Proteins Suggests High Folding Free Energy Barriers and Cooperativity may be Consequences of Natural Selection
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One-state Downhill versus Conventional Protein Folding
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The protein folding ‘speed limit’
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Protein folding studied by single-molecule FRET
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Energetic Evidence for Formation of a pH-dependent Hydrophobic Cluster in the Denatured State of Thermus thermophilus Ribonuclease H
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Submillisecond kinetics of protein folding
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How do small single-domain proteins fold?
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Infrared Studies of Fast Events in Protein Folding
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Thermodynamic and Kinetic Analysis of the SH3 Domain of Spectrin Shows a Two-State Folding Transition
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Robustness of Downhill Folding: Guidelines for the Analysis of Equilibrium Folding Experiments on Small Proteins
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Dynamics, Energetics, and Structure in Protein Folding
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Early Events in Protein Folding Explored by Rapid Mixing Methods
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Scaling of Folding Times with Protein Size
inferredcites →https://doi.org/10.1021/ja048309wopenalex-snapshot
A Simple Thermodynamic Test To Discriminate between Two-State and Downhill Folding
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Direct Measurement of Barrier Heights in Protein Folding
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Protein Folding Kinetics: Barrier Effects in Chemical and Thermal Denaturation Experiments
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Effect of Finite Size on Cooperativity and Rates of Protein Folding
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Estimating Free-Energy Barrier Heights for an Ultrafast Folding Protein from Calorimetric and Kinetic Data
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Atom-by-atom analysis of global downhill protein folding
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Analysis of 'downhill' protein folding; Analysis of protein-folding cooperativity (Reply)
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The energy landscape of a fast-folding protein mapped by Ala→Gly Substitutions
inferredcites →https://doi.org/10.1038/nsb0694-399openalex-snapshot
Elucidating the folding problem of helical peptides using empirical parameters
inferredcites →https://doi.org/10.1073/pnas.0403486101openalex-snapshot
Three-body interactions improve the prediction of rate and mechanism in protein folding models
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Exploring protein-folding ensembles: A variable-barrier model for the analysis of equilibrium unfolding experiments
inferredcites →https://doi.org/10.1073/pnas.052700099openalex-snapshot
Helix formation via conformation diffusion search
inferredcites →https://doi.org/10.1073/pnas.0538054100openalex-snapshot
Tuning the free-energy landscape of a WW domain by temperature, mutation, and truncation
inferredcites →https://doi.org/10.1073/pnas.0609717104openalex-snapshot
Distinguishing between cooperative and unimodal downhill protein folding
inferredcites →https://doi.org/10.1073/pnas.0708480105openalex-snapshot
Cooperative folding kinetics of BBL protein and peripheral subunit-binding domain homologues
inferredcites →https://doi.org/10.1073/pnas.0709376104openalex-snapshot
Origins of barriers and barrierless folding in BBL
inferredcites →https://doi.org/10.1073/pnas.221467198openalex-snapshot
Ultrafast folding of WW domains without structured aromatic clusters in the denatured state
inferredcites →https://doi.org/10.1126/science.1077809openalex-snapshot
Experimental Identification of Downhill Protein Folding
inferredcites →https://doi.org/10.1146/annurev.biophys.36.040306.132608openalex-snapshot
Conformational Dynamics and Ensembles in Protein Folding
inferredcites →https://doi.org/10.1146/annurev.physchem.48.1.545openalex-snapshot
THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective
inferredcites →https://doi.org/10.1146/annurev.physchem.50.1.485openalex-snapshot
T HE F AST P ROTEIN F OLDING P ROBLEM
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Dierential Scanning Calorimetry of Proteins and Zimm-Bragg Model in Water
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Protein Characterization by Thermal Property Measurement
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Molecular Dynamics Insight into the Diverse Thermodynamic Behavior of a Beta‐Hairpin Peptide
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Physics‐based prediction of protein folding and unfolding rates: Examining the roles of fold topology and core packing
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Interplaying roles of native topology and chain length in marginally cooperative and noncooperative folding of small protein fragments
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NMR Analysis of Protein Folding Interaction Networks
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Differential scanning calorimetry as a tool for protein folding and stability
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Native Topology of the Designed Protein Top7 is Not Conducive to Cooperative Folding
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Improvement of Structure-Based Potentials for Protein Folding by Native and Nonnative Hydrogen Bonds
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Equilibrium Unfolding of the PDZ Domain of β2-Syntrophin
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Between-Species Variation in the Kinetic Stability of TIM Proteins Linked to Solvation-Barrier Free Energies
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A Survey of λ Repressor Fragments from Two-State to Downhill Folding
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Folding Intermediates, Heterogeneous Native Ensembles and Protein Function
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Limited cooperativity in protein folding
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Fast protein folding kinetics
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Activation Barrier-Limited Folding and Conformational Sampling of a Dynamic Protein Domain
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Thermally versus Chemically Denatured Protein States
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Heterogeneity in Protein Folding and Unfolding Reactions
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Curvature and Torsion of Protein Main Chain as Local Order Parameters of Protein Unfolding
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Slow Folding of a Helical Protein: Large Barriers, Strong Internal Friction, or a Shallow, Bumpy Landscape?
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Protein Folding Dynamics as Diffusion on a Free Energy Surface: Rate Equation Terms, Transition Paths, and Analysis of Single-Molecule Photon Trajectories
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Analysis of Fluorescence Lifetime and Energy Transfer Efficiency in Single-Molecule Photon Trajectories of Fast-Folding Proteins
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Protein Folding Cooperativity and Thermodynamic Barriers of the Simplest β-Sheet Fold: A Survey of WW Domains
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Instrumental Effects in the Dynamics of an Ultrafast Folding Protein under Mechanical Force
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A Disordered Loop Mediates Heterogeneous Unfolding of an Ordered Protein by Altering the Native Ensemble
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FitFoldData: A Web-Based Toolkit for Circular Dichroism and Differential Scanning Calorimetry Data Analysis of Protein Thermal Denaturation
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Downhill (Un)Folding Coupled to Binding as a Mechanism for Engineering Broadband Protein Conformational Transducers
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Thermodynamic Characterization of the Folding Equilibrium of the Human Nedd4-WW4 Domain: At the Frontiers of Cooperative Folding
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PACE Force Field for Protein Simulations. 2. Folding Simulations of Peptides
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Evidence, from Simulations, of a Single State with Residual Native Structure at the Thermal Denaturation Midpoint of a Small Globular Protein
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Navigating the Downhill Protein Folding Regime via Structural Homologues
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Quantitative Prediction of Protein Folding Behaviors from a Simple Statistical Model
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Structural Zn(II) Implies a Switch from Fully Cooperative to Partly Downhill Folding in Highly Homologous Proteins
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Probing the Free Energy Landscape of the Fast-Folding gpW Protein by Relaxation Dispersion NMR
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Estimation of protein folding free energy barriers from calorimetric data by multi-model Bayesian analysis
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Crowding effects on the small, fast-folding protein λ6–85
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A one-dimensional free energy surface does not account for two-probe folding kinetics of protein α3D
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Sequence, structure, and cooperativity in folding of elementary protein structural motifs
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Exploiting the downhill folding regime via experiment
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Simulation des mécanismes de reconnaissance ligand-récepteur des glutathion transférases humaines par calcul du paysage d’énergie libre : Applications à la science du goût et au cancer.
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Single molecule magnetic tweezers for unfolding dynamics of Acyl-CoA binding protein
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