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Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s00705-015-2548-2openalex-snapshot
Complete genome sequence analysis and identification of putative metallo-beta-lactamase and SpoIIIE homologs in Bacillus cereus group phage BCP8-2, a new member of the proposed Bastille-like group
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Structural Analysis of a Putative Aminoglycoside N-Acetyltransferase from Bacillus anthracis
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Current perspectives on the dynamics of antibiotic resistance in different reservoirs
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Functional metagenomics reveals diverse β-lactamases in a remote Alaskan soil
inferredcites →https://doi.org/10.1038/ismej.2014.106openalex-snapshot
Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
inferredcites →https://doi.org/10.1038/ismej.2014.143openalex-snapshot
Depth-stratified functional and taxonomic niche specialization in the ‘core’ and ‘flexible’ Pacific Ocean Virome
inferredcites →https://doi.org/10.1038/nature08821openalex-snapshot
A human gut microbial gene catalogue established by metagenomic sequencing
inferredcites →https://doi.org/10.1038/nature09199openalex-snapshot
Viruses in the faecal microbiota of monozygotic twins and their mothers
inferredcites →https://doi.org/10.1038/nature12212openalex-snapshot
Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
inferredcites →https://doi.org/10.1038/ncomms3420openalex-snapshot
Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences
inferredcites →https://doi.org/10.1038/nrmicro2382openalex-snapshot
Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow
inferredcites →https://doi.org/10.1038/nrmicro2393openalex-snapshot
The phage-related chromosomal islands of Gram-positive bacteria
inferredcites →https://doi.org/10.1038/nrmicro3399openalex-snapshot
What is a resistance gene? Ranking risk in resistomes
inferredcites →https://doi.org/10.1073/pnas.1119061109openalex-snapshot
Hypervariable loci in the human gut virome
inferredcites →https://doi.org/10.1089/107662903322286445openalex-snapshot
The Novel Conjugative Transposon Tn 1207.3 Carries the Macrolide Efflux Gene mef (A) in Streptococcus pyogenes
inferredcites →https://doi.org/10.1093/dnares/dsn027openalex-snapshot
MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes
inferredcites →https://doi.org/10.1093/jac/dkr315openalex-snapshot
Bacteriophages and diffusion of genes encoding antimicrobial resistance in cystic fibrosis sputum microbiota
inferredcites →https://doi.org/10.1093/jac/dkr318openalex-snapshot
Bacteriophages as vehicles of the resistome in cystic fibrosis
inferredcites →https://doi.org/10.1093/jac/dks261openalex-snapshot
Identification of acquired antimicrobial resistance genes
inferredcites →https://doi.org/10.1093/nar/28.1.263openalex-snapshot
The Pfam Protein Families Database
inferredcites →https://doi.org/10.1093/nar/30.1.276openalex-snapshot
The Pfam Protein Families Database
inferredcites →https://doi.org/10.1093/nar/gkl842openalex-snapshot
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
inferredcites →https://doi.org/10.1093/nar/gkn656openalex-snapshot
ARDB--Antibiotic Resistance Genes Database
inferredcites →https://doi.org/10.1093/nar/gkr367openalex-snapshot
HMMER web server: interactive sequence similarity searching
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1098/rsob.130160openalex-snapshot
Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences
inferredcites →https://doi.org/10.1101/gr.122705.111openalex-snapshot
The human gut virome: Inter-individual variation and dynamic response to diet
inferredcites →https://doi.org/10.1111/j.1462-2920.2004.00664.xopenalex-snapshot
Uncultured soil bacteria are a reservoir of new antibiotic resistance genes
inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02422.xopenalex-snapshot
Characterization of novel antibiotic resistance genes identified by functional metagenomics on soil samples
inferredcites →https://doi.org/10.1126/science.1176950openalex-snapshot
Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora
inferredcites →https://doi.org/10.1126/science.1220761openalex-snapshot
The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens
inferredcites →https://doi.org/10.1126/science.1252229openalex-snapshot
Sulfur Oxidation Genes in Diverse Deep-Sea Viruses
inferredcites →https://doi.org/10.1128/aac.00419-13openalex-snapshot
The Comprehensive Antibiotic Resistance Database
inferredcites →https://doi.org/10.1128/aac.00499-09openalex-snapshot
Φm46.1, the Main Streptococcus pyogenes Element Carrying mef (A) and tet (O) Genes
inferredcites →https://doi.org/10.1128/aac.01310-13openalex-snapshot
ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
inferredcites →https://doi.org/10.1128/aac.01684-13openalex-snapshot
Antibiotic Resistance Genes in the Bacteriophage DNA Fraction of Human Fecal Samples
inferredcites →https://doi.org/10.1128/aac.02949-14openalex-snapshot
The Novel Macrolide-Lincosamide-Streptogramin B Resistance Gene erm (44) Is Associated with a Prophage in Staphylococcus xylosus
inferredcites →https://doi.org/10.1128/aac.03183-14openalex-snapshot
Characterization of a P1-Like Bacteriophage Carrying an SHV-2 Extended-Spectrum β-Lactamase from an Escherichia coli Strain
inferredcites →https://doi.org/10.1128/aem.00446-14openalex-snapshot
Modeling the Infection Dynamics of Bacteriophages in Enteric Escherichia coli: Estimating the Contribution of Transduction to Antimicrobial Gene Spread
inferredcites →https://doi.org/10.1128/aem.00873-08openalex-snapshot
Metagenomic Screening for Bleomycin Resistance Genes
inferredcites →https://doi.org/10.1128/aem.02206-08openalex-snapshot
Tetracycline Resistome of the Organic Pig Gut
inferredcites →https://doi.org/10.1128/aem.03080-09openalex-snapshot
Identification of Diverse Antimicrobial Resistance Determinants Carried on Bacterial, Plasmid, or Viral Metagenomes from an Activated Sludge Microbial Assemblage
inferredcites →https://doi.org/10.1128/aem.06331-11openalex-snapshot
Diversity and Abundance of Single-Stranded DNA Viruses in Human Feces
inferredcites →https://doi.org/10.1128/iai.71.12.7079-7086.2003openalex-snapshot
Prophage Induction and Expression of Prophage-EncodedVirulence Factors in Group A Streptococcus Serotype M3 StrainMGAS315
inferredcites →https://doi.org/10.1128/jb.188.8.3037-3051.2006openalex-snapshot
Detailed Genomic Analysis of the Wβ and γ Phages InfectingBacillus anthracis: Implications for Evolution of Environmental Fitness and Antibiotic Resistance
inferredcites →https://doi.org/10.1128/mbio.00260-11openalex-snapshot
Antibiotics in Feed Induce Prophages in Swine Fecal Microbiomes
inferredcites →https://doi.org/10.1128/mbio.01017-13openalex-snapshot
Diverse Antibiotic Resistance Genes in Dairy Cow Manure
inferredcites →https://doi.org/10.1128/mmbr.00016-10openalex-snapshot
Origins and Evolution of Antibiotic Resistance
inferredcites →https://doi.org/10.1186/gb-2013-14-11-r123openalex-snapshot
Metabolic reprogramming by viruses in the sunlit and dark ocean
inferredcites →https://doi.org/10.1186/s12864-015-1757-0openalex-snapshot
Putative type 1 thymidylate synthase and dihydrofolate reductase as signature genes of a novel bastille-like group of phages in the subfamily Spounavirinae
inferredcites →https://doi.org/10.1371/journal.pone.0007370openalex-snapshot
Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals
inferredcites →https://doi.org/10.1371/journal.pone.0078822openalex-snapshot
Pediatric Fecal Microbiota Harbor Diverse and Novel Antibiotic Resistance Genes
inferredcites →https://doi.org/10.1371/journal.pone.0118725openalex-snapshot
Comparative Genomics of Cluster O Mycobacteriophages
inferredcites →https://doi.org/10.1371/journal.pone.0134941openalex-snapshot
Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes
inferredcites →https://doi.org/10.1371/journal.ppat.1004219openalex-snapshot
Bacteriophages as Vehicles for Antibiotic Resistance Genes in the Environment
inferredcites →https://doi.org/10.2147/idr.s48820openalex-snapshot
Horizontal gene transfer in the human gastrointestinal tract: potential spread of antibiotic resistance genes
inferredcites →https://doi.org/10.3389/fmicb.2013.00087openalex-snapshot
The human microbiome as a reservoir of antimicrobial resistance
inferredcites →https://doi.org/10.3389/fmicb.2014.00687openalex-snapshot
Nucleotide sequence of conjugative prophage Φ1207.3 (formerly Tn1207.3) carrying the mef(A)/msr(D) genes for efflux resistance to macrolides in Streptococcus pyogenes
inferredcites →https://doi.org/10.3389/fmicb.2014.00746openalex-snapshot
Transduction of the Streptococcus pyogenes bacteriophage Φm46.1, carrying resistance genes mef(A) and tet(O), to other Streptococcus species
inferredcites →https://doi.org/10.4161/bact.27943openalex-snapshot
Applying the ResFinder and VirulenceFinder web-services for easy identification of acquired antibiotic resistance andE. colivirulence genes in bacteriophage and prophage nucleotide sequences
inferredcites →https://doi.org/10.4161/gmic.24627openalex-snapshot
Mobile genetic elements of the human gastrointestinal tract
inferredcites →https://doi.org/10.4161/mge.25847openalex-snapshot
Could bacteriophages transfer antibiotic resistance genes from environmental bacteria to human-body associated bacterial populations?
inferredcites →https://doi.org/10.7554/elife.03125openalex-snapshot
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
inferredcites →https://doi.org/10.7717/peerj.985openalex-snapshot
VirSorter: mining viral signal from microbial genomic data
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Plasmids Dominate the Proliferation of Antibiotic Resistance Genes in Aerobic Biofilm Driven by Antibiotic Selection
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Horizontal Gene Transfer Between Bacteriophages and Bacteria: Antibiotic Resistances and Toxin Production
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Phage Communication and the Ecological Implications on Microbial Interactions, Diversity, and Function
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Bioinformatics and Biostatistical Models for Analysis and Prognosis of Antimicrobial Resistance
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Bacteriophage-Mediated Horizontal Gene Transfer: Transduction
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Genome-wide comparative and taxonomic characterization of prophages in Stenotrophomonas maltophilia
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CRISPR-based gene editing for antimicrobial resistance control in human medicine
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Bacteriophages as Vehicles for Antibiotic Resistance Genes in the Onyar River, Spain
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Peculiarities of Staphylococcus aureus phages and their possible application in phage therapy
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Implications of bacteriophages on the acquisition and spread of antibiotic resistance in the environment
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Impacts of mobile genetic elements on antimicrobial resistance genes in gram-negative pathogens: Current insights and genomic approaches
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Arctic antibiotic resistance gene contamination, a result of anthropogenic activities and natural origin
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Prevalence of antibiotic resistance genes in bacteriophage DNA fraction from Funan River water in Sichuan, China
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Identification of a bacteriophage from an environmental multidrug-resistant E. coli isolate and its function in horizontal transfer of ARGs
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Antibiotic resistance genes in bacteriophages from diverse marine habitats
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inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.139424openalex-snapshot
Dynamics of bacteriophages in gut of giant pandas reveal a potential regulation of dietary intake on bacteriophage composition
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.160304openalex-snapshot
Metagenomics analysis reveals potential pathways and drivers of piglet gut phage-mediated transfer of ARGs
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.164708openalex-snapshot
Antibiotic resistance genes in bacteriophages from wastewater treatment plant and hospital wastewaters
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.178157openalex-snapshot
Phage-plasmid hybrids as vectors for antibiotic resistance in environmental Escherichia coli
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2025.181145openalex-snapshot
Carrier-resolved metagenomics suggests the dual “filter–hub” function of a large freshwater lake toward incoming antibiotic resistance genes
inferred← citeshttps://doi.org/10.1016/j.soilbio.2024.109554openalex-snapshot
Manure application enriches phage-associated antimicrobial resistance and reconstructs ecological network of phage-bacteria in paddy soil
inferred← citeshttps://doi.org/10.1016/j.tim.2018.05.009openalex-snapshot
Close Encounters of Three Kinds: Bacteriophages, Commensal Bacteria, and Host Immunity
inferred← citeshttps://doi.org/10.1016/j.tim.2019.02.008openalex-snapshot
Bacteriophages as Environmental Reservoirs of Antibiotic Resistance
inferred← citeshttps://doi.org/10.1016/j.tim.2020.05.003openalex-snapshot
Probing the Mobilome: Discoveries in the Dynamic Microbiome
inferred← citeshttps://doi.org/10.1016/j.tim.2020.12.011openalex-snapshot
Antimicrobial Resistance and Bacteriophages: An Overlooked Intersection in Water Disinfection
inferred← citeshttps://doi.org/10.1016/j.tim.2022.07.011openalex-snapshot
Does phage-mediated horizontal gene transfer represent an environmental risk?
inferred← citeshttps://doi.org/10.1016/j.virusres.2017.11.011openalex-snapshot
Increase in taxonomic assignment efficiency of viral reads in metagenomic studies
inferred← citeshttps://doi.org/10.1016/j.watres.2019.06.026openalex-snapshot
β-lactam resistance genes in bacteriophage and bacterial DNA from wastewater, river water, and irrigation water in Washington State
inferred← citeshttps://doi.org/10.1016/j.watres.2019.115250openalex-snapshot
Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications
inferred← citeshttps://doi.org/10.1016/j.watres.2021.117941openalex-snapshot
Metagenomics combined with comprehensive validation as a public health risk assessment tool for urban and agricultural run-off
inferred← citeshttps://doi.org/10.1016/j.watres.2022.118237openalex-snapshot
A mixed blessing of viruses in wastewater treatment plants
inferred← citeshttps://doi.org/10.1016/j.watres.2023.120611openalex-snapshot
Metagenomic analysis unveils the underexplored roles of prokaryotic viruses in a full-scale landfill leachate treatment plant
inferred← citeshttps://doi.org/10.1016/j.watres.2023.120859openalex-snapshot
Identifying ARG-carrying bacteriophages in a lake replenished by reclaimed water using deep learning techniques
inferred← citeshttps://doi.org/10.1016/j.watres.2024.122253openalex-snapshot
Decrypting the viral community in aerobic activated sludge reactors treating antibiotic production wastewater
inferred← citeshttps://doi.org/10.1016/j.watres.2024.122776openalex-snapshot
The role of bacteriophages in facilitating the horizontal transfer of antibiotic resistance genes in municipal wastewater treatment plants
inferred← citeshttps://doi.org/10.1016/j.watres.2024.123030openalex-snapshot
Dissemination mechanisms of unique antibiotic resistance genes from flowback water to soil revealed by combined Illumina and Nanopore sequencing
inferred← citeshttps://doi.org/10.1016/j.watres.2025.123627openalex-snapshot
Neglected role of virus-host interactions driving antibiotic resistance genes reduction in an urban river receiving treated wastewater
inferred← citeshttps://doi.org/10.1016/j.watres.2026.126401openalex-snapshot
Virus-mediated fate of antimicrobial resistance genes in livestock manure anaerobic digestion
inferred← citeshttps://doi.org/10.1016/j.watres.2026.126419openalex-snapshot
Diverse and ultraviolet-inducible phage-associated antibiotic resistance genes in wastewater treatment plants
inferred← citeshttps://doi.org/10.1016/j.ygeno.2019.06.016openalex-snapshot
Prophages contribute to genome plasticity of Klebsiella pneumoniae and may involve the chromosomal integration of ARGs in CG258
inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.08.007openalex-snapshot
A genome guided evaluation of the Lab4 probiotic consortium
inferred← citeshttps://doi.org/10.1021/acs.biochem.5c00349openalex-snapshot
Viral Dark Matter: Illuminating Protein Function, Ecology, and Biotechnological Promises
inferred← citeshttps://doi.org/10.1021/acs.est.3c07664openalex-snapshot
Viral Communities Contribute More to the Lysis of Antibiotic-Resistant Bacteria than the Transduction of Antibiotic Resistance Genes in Anaerobic Digestion Revealed by Metagenomics
inferred← citeshttps://doi.org/10.1021/acs.est.4c03812openalex-snapshot
Viral Communities Suppress the Earthworm Gut Antibiotic Resistome by Lysing Bacteria on a National Scale
inferred← citeshttps://doi.org/10.1021/acs.est.6c07553openalex-snapshot
Trace Hydrogen Sulfide Enhances Plasmid-Mediated Antibiotic Resistance Gene Transfer under Anaerobic Sewer-Like Conditions: Associations with Contact and Energy-State Responses
inferred← citeshttps://doi.org/10.1038/nrmicro.2017.30openalex-snapshot
Ménage à trois in the human gut: interactions between host, bacteria and phages
inferred← citeshttps://doi.org/10.1038/s41385-019-0250-5openalex-snapshot
New insights into intestinal phages
inferred← citeshttps://doi.org/10.1038/s41396-019-0478-9openalex-snapshot
Viruses as key reservoirs of antibiotic resistance genes in the environment
inferred← citeshttps://doi.org/10.1038/s41396-020-00825-6openalex-snapshot
Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters
inferred← citeshttps://doi.org/10.1038/s41396-022-01338-0openalex-snapshot
Dominance of phage particles carrying antibiotic resistance genes in the viromes of retail food sources
inferred← citeshttps://doi.org/10.1038/s41396-023-01463-4openalex-snapshot
Conjugative transfer of streptococcal prophages harboring antibiotic resistance and virulence genes
inferred← citeshttps://doi.org/10.1038/s41426-018-0169-zopenalex-snapshot
The disparate effects of bacteriophages on antibiotic-resistant bacteria
inferred← citeshttps://doi.org/10.1038/s41467-019-14042-zopenalex-snapshot
Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages
inferred← citeshttps://doi.org/10.1038/s41467-020-20199-9openalex-snapshot
Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria
inferred← citeshttps://doi.org/10.1038/s41467-023-37975-yopenalex-snapshot
Altered human gut virome in patients undergoing antibiotics therapy for Helicobacter pylori
inferred← citeshttps://doi.org/10.1038/s41467-023-38400-0openalex-snapshot
Highly host-linked viromes in the built environment possess habitat-dependent diversity and functions for potential virus-host coevolution
inferred← citeshttps://doi.org/10.1038/s41467-023-41075-2openalex-snapshot
Interrogating the viral dark matter of the rumen ecosystem with a global virome database
inferred← citeshttps://doi.org/10.1038/s41467-024-45757-3openalex-snapshot
Phage-plasmids promote recombination and emergence of phages and plasmids
inferred← citeshttps://doi.org/10.1038/s41467-024-51936-zopenalex-snapshot
Giant viruses as reservoirs of antibiotic resistance genes
inferred← citeshttps://doi.org/10.1038/s41467-024-52450-yopenalex-snapshot
Prophage-encoded antibiotic resistance genes are enriched in human-impacted environments
inferred← citeshttps://doi.org/10.1038/s41467-025-57088-yopenalex-snapshot
Species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping with Argo
inferred← citeshttps://doi.org/10.1038/s41467-025-62455-wopenalex-snapshot
Ecological connectivity of genomic markers of antimicrobial resistance in Escherichia coli in Hong Kong
inferred← citeshttps://doi.org/10.1038/s41467-026-68726-4openalex-snapshot
Large-scale capsid-mediated mobilisation of bacterial genomic DNA in the gut microbiome
inferred← citeshttps://doi.org/10.1038/s41522-024-00554-0openalex-snapshot
Massive expansion of the pig gut virome based on global metagenomic mining
inferred← citeshttps://doi.org/10.1038/s41522-026-00941-9openalex-snapshot
Mining of food metagenomes reveals an unexplored diversity of dsDNA bacteriophages
inferred← citeshttps://doi.org/10.1038/s41564-018-0210-yopenalex-snapshot
Murine colitis reveals a disease-associated bacteriophage community
inferred← citeshttps://doi.org/10.1038/s41564-019-0526-2openalex-snapshot
Defining the human gut host–phage network through single-cell viral tagging
inferred← citeshttps://doi.org/10.1038/s41564-021-00928-6openalex-snapshot
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
inferred← citeshttps://doi.org/10.1038/s41576-025-00871-wopenalex-snapshot
Viromics approaches for the study of viral diversity and ecology in microbiomes
inferred← citeshttps://doi.org/10.1038/s41579-021-00602-yopenalex-snapshot
Interactions between bacterial and phage communities in natural environments
inferred← citeshttps://doi.org/10.1038/s41579-022-00755-4openalex-snapshot
Mutualistic interplay between bacteriophages and bacteria in the human gut
inferred← citeshttps://doi.org/10.1038/s41579-024-01041-1openalex-snapshot
Ecological and evolutionary mechanisms driving within-patient emergence of antimicrobial resistance
inferred← citeshttps://doi.org/10.1038/s41585-019-0192-4openalex-snapshot
Bacteriophages of the lower urinary tract
inferred← citeshttps://doi.org/10.1038/s41587-026-03188-zopenalex-snapshot
High-quality phage assembly from metagenomes with PALACE
inferred← citeshttps://doi.org/10.1038/s41596-020-0346-0openalex-snapshot
Standardized bacteriophage purification for personalized phage therapy
inferred← citeshttps://doi.org/10.1038/s41598-019-40496-8openalex-snapshot
The dynamics of the antibiotic resistome in the feces of freshly weaned pigs following therapeutic administration of oxytetracycline
inferred← citeshttps://doi.org/10.1038/s41598-019-49898-0openalex-snapshot
Infectious phage particles packaging antibiotic resistance genes found in meat products and chicken feces
inferred← citeshttps://doi.org/10.1038/s41598-020-63432-7openalex-snapshot
Unravelling the consequences of the bacteriophages in human samples
inferred← citeshttps://doi.org/10.1038/s41598-021-04534-8openalex-snapshot
Isolation, characterization, molecular analysis and application of bacteriophage DW-EC to control Enterotoxigenic Escherichia coli on various foods
inferred← citeshttps://doi.org/10.1038/s41598-021-80990-6openalex-snapshot
Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage
inferred← citeshttps://doi.org/10.1038/s41598-022-14025-zopenalex-snapshot
Characterization of Stenotrophomonas maltophilia phage AXL1 as a member of the genus Pamexvirus encoding resistance to trimethoprim–sulfamethoxazole
inferred← citeshttps://doi.org/10.1038/s41598-024-58226-0openalex-snapshot
Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium
inferred← citeshttps://doi.org/10.1038/s42003-024-06798-yopenalex-snapshot
Metagenomic analysis reveals high diversity of gut viromes in yaks (Bos grunniens) from the Qinghai-Tibet Plateau
inferred← citeshttps://doi.org/10.1038/s43705-021-00054-8openalex-snapshot
Analysis of viromes and microbiomes from pig fecal samples reveals that phages and prophages rarely carry antibiotic resistance genes
inferred← citeshttps://doi.org/10.1038/s44221-025-00558-wopenalex-snapshot
Phage-mediated resistome dynamics in global aquifers
inferred← citeshttps://doi.org/10.1038/s44259-025-00117-zopenalex-snapshot
Re-evaluating what makes a phage unsuitable for therapy
inferred← citeshttps://doi.org/10.1038/srep40424openalex-snapshot
Shigatoxin encoding Bacteriophage ϕ24B modulates bacterial metabolism to raise antimicrobial tolerance
inferred← citeshttps://doi.org/10.1039/d1np00053eopenalex-snapshot
Challenges and opportunities for cheat therapy in the control of bacterial infections
inferred← citeshttps://doi.org/10.1039/d2ew00087copenalex-snapshot
Targeting current and future threats: recent methodological trends in environmental antimicrobial resistance research and their relationships to risk assessment
inferred← citeshttps://doi.org/10.1042/etls20170039openalex-snapshot
The human gut virome: form and function
inferred← citeshttps://doi.org/10.1080/10408398.2026.2629533openalex-snapshot
Antimicrobial resistance and the human gut microbiome—a food safety perspective
inferred← citeshttps://doi.org/10.1080/1040841x.2019.1691973openalex-snapshot
Phages amid antimicrobial resistance
inferred← citeshttps://doi.org/10.1080/1040841x.2024.2339262openalex-snapshot
Dynamics of antibiotic resistance genes in plasmids and bacteriophages
inferred← citeshttps://doi.org/10.1080/13102818.2022.2151378openalex-snapshot
In silico discovering relationship between bacteriophages and antimicrobial resistance
inferred← citeshttps://doi.org/10.1080/19490976.2020.1799654openalex-snapshot
Antimicrobial resistance in enteric bacteria: current state and next-generation solutions
inferred← citeshttps://doi.org/10.1080/19490976.2021.1900995openalex-snapshot
Expansion and persistence of antibiotic-specific resistance genes following antibiotic treatment
inferred← citeshttps://doi.org/10.1080/19490976.2021.1911279openalex-snapshot
The role of the human gut microbiota in colonization and infection with multidrug-resistant bacteria
inferred← citeshttps://doi.org/10.1080/19490976.2022.2055944openalex-snapshot
Good microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome
inferred← citeshttps://doi.org/10.1080/19490976.2022.2113717openalex-snapshot
Intestinal phages interact with bacteria and are involved in human diseases
inferred← citeshttps://doi.org/10.1080/19490976.2024.2309684openalex-snapshot
A universe of human gut-derived bacterial prophages: unveiling the hidden viral players in intestinal microecology
inferred← citeshttps://doi.org/10.1080/19490976.2025.2541033openalex-snapshot
Breastfeeding and the milk resistome shape the establishment and transmission of antibiotic resistance genes in the infant gut microbiome
inferred← citeshttps://doi.org/10.1089/mdr.2019.0362openalex-snapshot
Letter to the Editor: Prophages Encode Antibiotic Resistance Genes in Acinetobacter baumannii
inferred← citeshttps://doi.org/10.1089/mdr.2021.0163openalex-snapshot
The Role of Bacteriophages as Important Reservoirs of Extended-Spectrum Beta-Lactamase Genes in Azerbaijan Hospitals
inferred← citeshttps://doi.org/10.1089/phage.2021.0007openalex-snapshot
INfrastructure for a PHAge REference Database: Identification of Large-Scale Biases in the Current Collection of Cultured Phage Genomes
inferred← citeshttps://doi.org/10.1089/phage.2021.0013openalex-snapshot
Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation
inferred← citeshttps://doi.org/10.1089/phage.2021.0015openalex-snapshot
Phage Genome Annotation: Where to Begin and End
inferred← citeshttps://doi.org/10.1089/phage.2023.0047openalex-snapshot
Thinking Phage Innovations Through Evolution and Ecology
inferred← citeshttps://doi.org/10.1093/bfgp/elaf011openalex-snapshot
Genomic insights into bacteriophages: a new frontier in AMR detection and phage therapy
inferred← citeshttps://doi.org/10.1093/bioinformatics/btac776openalex-snapshot
Pharokka: a fast scalable bacteriophage annotation tool
inferred← citeshttps://doi.org/10.1093/cid/ciad539openalex-snapshot
Knowing and Naming: Phage Annotation and Nomenclature for Phage Therapy
inferred← citeshttps://doi.org/10.1093/femsec/fiaa100openalex-snapshot
A generalised model for generalised transduction: the importance of co-evolution and stochasticity in phage mediated antimicrobial resistance transfer
inferred← citeshttps://doi.org/10.1093/femsec/fiaa200openalex-snapshot
A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination
inferred← citeshttps://doi.org/10.1093/femsec/fiae052openalex-snapshot
The role of rhizosphere phages in soil health
inferred← citeshttps://doi.org/10.1093/femsec/fiy107openalex-snapshot
Transient negative effects of antibiotics on phages do not jeopardise the advantages of combination therapies
inferred← citeshttps://doi.org/10.1093/femsre/fuaf058openalex-snapshot
Global spread of Streptococcus pyogenes A genomics-supported narrative review
inferred← citeshttps://doi.org/10.1093/gastro/goac012openalex-snapshot
Phage-mediated horizontal gene transfer and its implications for the human gut microbiome
inferred← citeshttps://doi.org/10.1093/gbe/evag079openalex-snapshot
On the Low Abundance of Antibiotic Resistance Genes in Bacteriophage Genomes and Their Random Acquisition via Specialized Transduction
inferred← citeshttps://doi.org/10.1093/gigascience/giac072openalex-snapshot
Antibiotic resistance genes are differentially mobilized according to resistance mechanism
inferred← citeshttps://doi.org/10.1093/jac/dky540openalex-snapshot
Faecal phageome of healthy individuals: presence of antibiotic resistance genes and variations caused by ciprofloxacin treatment
inferred← citeshttps://doi.org/10.1093/jtm/taaf114openalex-snapshot
Microbiome alterations during and after international travel
inferred← citeshttps://doi.org/10.1093/molbev/msaf060openalex-snapshot
The Spread of Antibiotic Resistance Is Driven by Plasmids Among the Fastest Evolving and of Broadest Host Range
inferred← citeshttps://doi.org/10.1093/nar/gkaa621openalex-snapshot
DRAM for distilling microbial metabolism to automate the curation of microbiome function
inferred← citeshttps://doi.org/10.1093/nar/gkac1220openalex-snapshot
The ESKAPE mobilome contributes to the spread of antimicrobial resistance and CRISPR-mediated conflict between mobile genetic elements
inferred← citeshttps://doi.org/10.1093/nar/gkad979openalex-snapshot
PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations
inferred← citeshttps://doi.org/10.1093/nar/gkaf1225openalex-snapshot
VIRE: a metagenome-derived, planetary-scale virome resource with environmental context
inferred← citeshttps://doi.org/10.1093/nargab/lqac057openalex-snapshot
Mining bacterial NGS data vastly expands the complete genomes of temperate phages
inferred← citeshttps://doi.org/10.1093/sumbio/qvae021openalex-snapshot
Microbial antibiotic resistance genes across an anthropogenic gradient in a Canadian High Arctic watershed
inferred← citeshttps://doi.org/10.1098/rspb.2023.1088openalex-snapshot
Prophages and plasmids can display opposite trends in the types of accessory genes they carry
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