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Plasmids Dominate the Proliferation of Antibiotic Resistance Genes in Aerobic Biofilm Driven by Antibiotic Selection

https://doi.org/10.2139/ssrn.4755170
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Novel Transposon Tn6433 Variants Accelerate the Dissemination of tet(E) in Aeromonas in an Aerobic Biofilm Reactor under Oxytetracycline Stresses
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Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
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Fast gapped-read alignment with Bowtie 2
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Organochlorine contamination enriches virus-encoded metabolism and pesticide degradation associated auxiliary genes in soil microbiomes
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Epidemiological and phylogenetic analysis reveals Flavobacteriaceae as potential ancestral source of tigecycline resistance gene tet(X)
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An omics-based framework for assessing the health risk of antimicrobial resistance genes
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Assessment of global health risk of antibiotic resistance genes
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Biofilms preserve the transmissibility of a multi-drug resistance plasmid
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Intra- and interpopulation transposition of mobile genetic elements driven by antibiotic selection
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Emergence of plasmid-mediated high-level tigecycline resistance genes in animals and humans
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Plasmid-encoded tet(X) genes that confer high-level tigecycline resistance in Escherichia coli
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Phage diversity, genomics and phylogeny
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Beyond horizontal gene transfer: the role of plasmids in bacterial evolution
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
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In-feed antibiotic effects on the swine intestinal microbiome
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Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes
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TetX Is a Flavin-dependent Monooxygenase Conferring Resistance to Tetracycline Antibiotics
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Transmissible Plasmids and Integrons Shift Escherichia coli Population Toward Larger Multiple Drug Resistance Numbers
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ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes
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Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B
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PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures
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Conjugative plasmids: vessels of the communal gene pool
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Mobility of Plasmids
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Integrative and Conjugative Elements (ICEs): What They Do and How They Work
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Prodigal: prokaryotic gene recognition and translation initiation site identification
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Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing
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Freshwater viral metagenome reveals novel and functional phage-borne antibiotic resistance genes
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Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge
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Antibiotic Selection Pressure and Resistance in Streptococcus pneumoniae and Streptococcus pyogenes
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